Wall clock time and date at job start Tue Mar 31 2020 17:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 115.55864 * 2 1 4 4 C 1.53000 * 117.50170 * 145.68355 * 2 1 3 5 5 C 1.52997 * 117.50391 * 214.30866 * 2 1 3 6 6 H 1.09002 * 117.51362 * 359.97438 * 5 2 1 7 7 C 1.52996 * 117.50268 * 145.02246 * 5 2 1 8 8 N 1.46503 * 109.47206 * 185.01403 * 7 5 2 9 9 C 1.34773 * 120.00266 * 180.02562 * 8 7 5 10 10 O 1.21349 * 119.99624 * 0.27166 * 9 8 7 11 11 C 1.49453 * 120.00502 * 180.02562 * 9 8 7 12 12 O 1.21347 * 119.99376 * 359.97438 * 11 9 8 13 13 N 1.34768 * 120.00135 * 180.02562 * 11 9 8 14 14 C 1.46503 * 119.99899 * 179.97438 * 13 11 9 15 15 C 1.50700 * 109.47100 * 179.97438 * 14 13 11 16 16 C 1.38320 * 119.96647 * 269.72028 * 15 14 13 17 17 C 1.38277 * 120.13834 * 179.76714 * 16 15 14 18 18 C 1.38118 * 120.07148 * 0.50983 * 17 16 15 19 19 C 1.38862 * 119.92617 * 359.74833 * 18 17 16 20 20 O 1.35750 * 120.06406 * 179.97438 * 19 18 17 21 21 C 1.34827 * 117.00616 * 354.48215 * 20 19 18 22 22 H 1.08008 * 119.99468 * 5.06605 * 21 20 19 23 23 C 1.38652 * 120.00647 * 185.05631 * 21 20 19 24 24 N 1.31558 * 119.99825 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00224 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47276 * 60.00609 * 25 23 21 27 27 H 1.48505 * 109.47095 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47565 * 300.00276 * 25 23 21 29 29 C 1.38078 * 119.96353 * 90.00003 * 15 14 13 30 30 H 1.09000 * 109.47004 * 205.69427 * 1 2 3 31 31 H 1.08999 * 109.47071 * 325.69210 * 1 2 3 32 32 H 1.09000 * 109.47011 * 85.69421 * 1 2 3 33 33 H 1.08999 * 117.49629 * 359.97438 * 4 2 1 34 34 H 1.09000 * 117.51939 * 214.97565 * 4 2 1 35 35 H 1.08994 * 109.47209 * 65.00988 * 7 5 2 36 36 H 1.09001 * 109.46674 * 305.00785 * 7 5 2 37 37 H 0.97005 * 119.99902 * 0.02562 * 8 7 5 38 38 H 0.97005 * 120.00200 * 359.97438 * 13 11 9 39 39 H 1.08993 * 109.46951 * 299.99573 * 14 13 11 40 40 H 1.09002 * 109.47224 * 59.99963 * 14 13 11 41 41 H 1.08004 * 119.93240 * 0.02562 * 16 15 14 42 42 H 1.08001 * 119.96658 * 180.26102 * 17 16 15 43 43 H 1.08003 * 120.03844 * 179.76704 * 18 17 16 44 44 H 0.96995 * 120.00251 * 180.02562 * 24 23 21 45 45 H 1.08000 * 120.03930 * 359.95516 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 0.7651 5 6 2.2365 -1.1209 -0.7649 6 1 1.6116 -1.8589 -1.2679 7 6 3.5491 -0.7759 -1.4713 8 7 4.0085 -1.9345 -2.2413 9 6 5.1527 -1.8621 -2.9497 10 8 5.8050 -0.8389 -2.9458 11 6 5.6211 -3.0438 -3.7357 12 8 4.9714 -4.0687 -3.7356 13 7 6.7656 -2.9716 -4.4437 14 6 7.2250 -4.1301 -5.2137 15 6 8.5182 -3.7905 -5.9089 16 6 8.4969 -3.2508 -7.1823 17 6 9.6812 -2.9334 -7.8217 18 6 10.8898 -3.1642 -7.1943 19 6 10.9147 -3.7108 -5.9181 20 8 12.1010 -3.9394 -5.2991 21 6 13.2195 -3.7212 -6.0196 22 1 13.1490 -3.3025 -7.0127 23 6 14.4603 -4.0340 -5.4857 24 7 14.5462 -4.5442 -4.2761 25 14 16.0099 -3.7310 -6.4837 26 1 16.1139 -2.2860 -6.8101 27 1 17.1967 -4.1461 -5.6935 28 1 15.9512 -4.5194 -7.7408 29 6 9.7232 -4.0237 -5.2764 30 1 -0.3633 -0.9261 0.4456 31 1 -0.3633 0.8489 0.5792 32 1 -0.3633 0.0772 -1.0248 33 1 1.6113 -1.8581 1.2688 34 1 3.1716 -0.8754 1.2684 35 1 4.3022 -0.5109 -0.7293 36 1 3.3891 0.0669 -2.1437 37 1 3.4891 -2.7538 -2.2412 38 1 7.2852 -2.1524 -4.4435 39 1 7.3841 -4.9732 -4.5415 40 1 6.4722 -4.3946 -5.9563 41 1 7.5532 -3.0731 -7.6767 42 1 9.6612 -2.5082 -8.8143 43 1 11.8146 -2.9195 -7.6957 44 1 15.4142 -4.7628 -3.9024 45 1 9.7393 -4.4487 -4.2836 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117084582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:37 Heat of formation + Delta-G solvation = -75.562080 kcal Electronic energy + Delta-G solvation = -26369.841567 eV Core-core repulsion = 22352.848605 eV Total energy + Delta-G solvation = -4016.992962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -41.78691 -40.84318 -39.84693 -38.89144 -38.47484 -36.28434 -35.29812 -34.28919 -32.32229 -30.81901 -30.25979 -28.36339 -27.54795 -26.95414 -24.47900 -23.27399 -22.44694 -22.22282 -21.81458 -21.12002 -19.94855 -19.31360 -18.69800 -18.02586 -17.24584 -16.88416 -16.78949 -16.60075 -16.39016 -16.10835 -15.80234 -15.55064 -15.42617 -15.09678 -15.00772 -14.67044 -14.35864 -14.07869 -13.96760 -13.92754 -13.67917 -13.35607 -13.09044 -13.05074 -12.87912 -12.52513 -12.41131 -12.38501 -12.28492 -12.25695 -12.14863 -11.23229 -11.08350 -11.05543 -10.80996 -10.67736 -10.36798 -10.24458 -9.78064 -9.04536 -8.47066 -6.15885 0.28496 0.31971 0.69551 1.33764 1.35626 1.46635 1.51722 2.08431 2.17608 2.52458 2.79295 2.89523 3.15419 3.36828 3.41212 3.58191 3.78257 3.87047 3.99508 4.07818 4.19773 4.28792 4.38339 4.45362 4.50574 4.52418 4.59767 4.65010 4.71790 4.88721 4.94908 4.97700 4.99543 5.05567 5.06768 5.11345 5.22408 5.24330 5.27603 5.44481 5.60177 5.68250 5.70222 5.85908 6.01012 6.15492 6.28324 6.65168 6.87589 6.97420 7.77339 8.75712 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.001775 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.065560 B =15766.857135 C =16450.383461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.140 4.140 3 H 0.108 0.892 4 C -0.173 4.173 5 C -0.171 4.171 6 H 0.122 0.878 7 C 0.148 3.852 8 N -0.684 5.684 9 C 0.509 3.491 10 O -0.545 6.545 11 C 0.509 3.491 12 O -0.540 6.540 13 N -0.686 5.686 14 C 0.171 3.829 15 C -0.065 4.065 16 C -0.167 4.167 17 C -0.071 4.071 18 C -0.233 4.233 19 C 0.110 3.890 20 O -0.232 6.232 21 C -0.415 4.415 22 H 0.104 0.896 23 C -0.023 4.023 24 N -0.920 5.920 25 Si 1.018 2.982 26 H -0.257 1.257 27 H -0.273 1.273 28 H -0.257 1.257 29 C -0.180 4.180 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.421 0.579 38 H 0.416 0.584 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.121 0.879 44 H 0.272 0.728 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.470 7.444 2.853 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 H 0.126 0.874 4 C -0.210 4.210 5 C -0.189 4.189 6 H 0.140 0.860 7 C 0.026 3.974 8 N -0.337 5.337 9 C 0.289 3.711 10 O -0.423 6.423 11 C 0.290 3.710 12 O -0.418 6.418 13 N -0.338 5.338 14 C 0.049 3.951 15 C -0.066 4.066 16 C -0.186 4.186 17 C -0.089 4.089 18 C -0.253 4.253 19 C 0.060 3.940 20 O -0.139 6.139 21 C -0.490 4.490 22 H 0.121 0.879 23 C -0.220 4.220 24 N -0.558 5.558 25 Si 0.837 3.163 26 H -0.181 1.181 27 H -0.198 1.198 28 H -0.181 1.181 29 C -0.200 4.200 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.259 0.741 38 H 0.253 0.747 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.169 0.831 42 H 0.167 0.833 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.282 7.287 3.239 27.465 hybrid contribution 1.319 -0.067 -0.053 1.321 sum -24.963 7.220 3.186 26.181 Atomic orbital electron populations 1.21398 0.91679 1.02630 1.02381 1.22482 0.96116 0.94496 1.02816 0.87362 1.23348 1.03024 1.01695 0.92910 1.22501 0.97488 1.04140 0.94797 0.86019 1.21098 0.94613 0.87297 0.94421 1.45732 1.22942 1.18308 1.46761 1.20071 0.82403 0.87696 0.80940 1.90789 1.55847 1.31997 1.63631 1.20130 0.82017 0.88167 0.80726 1.90749 1.55933 1.31576 1.63569 1.45923 1.23185 1.17853 1.46868 1.20289 0.92492 0.87464 0.94821 1.19439 0.92247 0.99667 0.95212 1.21038 0.98867 1.03853 0.94808 1.21178 0.90901 0.96811 0.99968 1.21399 1.00071 1.07703 0.96087 1.19875 0.87119 0.94414 0.92603 1.83944 1.11907 1.77826 1.40226 1.21794 0.82574 1.43961 1.00720 0.87909 1.26589 1.02012 0.95755 0.97672 1.70180 1.26602 1.42162 1.16893 0.84651 0.74546 0.79599 0.77456 1.18147 1.19805 1.18077 1.20254 0.90208 1.08421 1.01105 0.92074 0.91358 0.91831 0.87645 0.88703 0.91273 0.90565 0.74100 0.74706 0.90411 0.87888 0.83105 0.83250 0.86110 0.91881 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.19 71.98 0.73 -0.13 16 2 C -0.14 -1.26 6.13 -10.80 -0.07 -1.33 16 3 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.17 -1.65 9.82 30.59 0.30 -1.34 16 5 C -0.17 -1.73 5.57 -10.80 -0.06 -1.79 16 6 H 0.12 1.04 8.04 -2.39 -0.02 1.02 16 7 C 0.15 2.16 5.96 86.38 0.51 2.67 16 8 N -0.68 -11.96 5.55 -464.42 -2.58 -14.54 16 9 C 0.51 12.16 7.89 87.27 0.69 12.85 16 10 O -0.55 -15.93 16.48 -3.24 -0.05 -15.98 16 11 C 0.51 12.93 7.89 87.27 0.69 13.62 16 12 O -0.54 -15.03 16.48 -3.24 -0.05 -15.09 16 13 N -0.69 -17.54 5.54 -468.15 -2.59 -20.13 16 14 C 0.17 4.42 5.80 85.63 0.50 4.92 16 15 C -0.07 -2.04 5.25 -19.88 -0.10 -2.15 16 16 C -0.17 -4.71 9.70 22.30 0.22 -4.49 16 17 C -0.07 -2.23 10.04 22.25 0.22 -2.01 16 18 C -0.23 -9.68 9.17 22.39 0.21 -9.48 16 19 C 0.11 5.34 6.65 22.58 0.15 5.49 16 20 O -0.23 -13.85 9.76 -22.71 -0.22 -14.07 16 21 C -0.41 -23.87 9.49 67.92 0.64 -23.23 16 22 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 23 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 24 N -0.92 -56.45 13.67 21.61 0.30 -56.15 16 25 Si 1.02 42.51 29.55 68.60 2.03 44.53 16 26 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 29 C -0.18 -7.40 9.65 22.39 0.22 -7.18 16 30 H 0.06 0.39 7.90 -2.39 -0.02 0.37 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.11 0.84 8.05 -2.39 -0.02 0.82 16 34 H 0.09 0.97 8.03 -2.39 -0.02 0.95 16 35 H 0.07 1.12 7.87 -2.39 -0.02 1.10 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.42 6.12 7.87 -92.70 -0.73 5.39 16 38 H 0.42 10.89 7.94 -92.70 -0.74 10.15 16 39 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 40 H 0.10 2.25 8.08 -2.39 -0.02 2.23 16 41 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 43 H 0.12 5.10 5.64 -2.91 -0.02 5.09 16 44 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -73.26 390.77 1.71 -71.55 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: -0.43 Total: 34.27 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 5.31 Total: -14.40 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -4.88 Total: -90.82 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.33 Total: -45.13 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -73.26 1.71 -71.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117084582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.011 kcal (2) G-P(sol) polarization free energy of solvation -73.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds