Wall clock time and date at job start Tue Mar 31 2020 18:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46862 * 2 1 4 4 N 1.46498 * 109.46728 * 120.00170 * 2 1 3 5 5 C 1.34783 * 119.99791 * 274.99415 * 4 2 1 6 6 O 1.21351 * 119.99858 * 0.02562 * 5 4 2 7 7 C 1.49449 * 120.00090 * 180.02562 * 5 4 2 8 8 O 1.21351 * 120.00052 * 0.02562 * 7 5 4 9 9 N 1.34770 * 120.00106 * 180.02562 * 7 5 4 10 10 C 1.47029 * 125.64701 * 359.69597 * 9 7 5 11 11 C 1.54341 * 107.26204 * 178.84665 * 10 9 7 12 12 C 1.55155 * 103.02218 * 338.13966 * 11 10 9 13 13 O 1.42898 * 111.00555 * 277.23233 * 12 11 10 14 14 C 1.50695 * 111.03627 * 153.39651 * 12 11 10 15 15 H 1.08003 * 120.00030 * 272.60920 * 14 12 11 16 16 C 1.37878 * 120.00266 * 92.60733 * 14 12 11 17 17 N 1.31516 * 120.00183 * 173.51864 * 16 14 12 18 18 Si 1.86796 * 119.99798 * 353.51899 * 16 14 12 19 19 H 1.48509 * 109.46959 * 87.32494 * 18 16 14 20 20 H 1.48500 * 109.47358 * 207.31891 * 18 16 14 21 21 H 1.48492 * 109.47208 * 327.32261 * 18 16 14 22 22 C 1.47426 * 125.64921 * 180.02562 * 9 7 5 23 23 C 1.50700 * 109.47104 * 240.00073 * 2 1 3 24 24 C 1.38238 * 119.99666 * 279.72556 * 23 2 1 25 25 C 1.38230 * 119.99794 * 179.76640 * 24 23 2 26 26 C 1.38235 * 120.00060 * 0.51036 * 25 24 23 27 27 C 1.38234 * 120.00067 * 359.74481 * 26 25 24 28 28 C 1.38227 * 120.00111 * 100.00406 * 23 2 1 29 29 H 1.08997 * 109.47358 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47215 * 300.00703 * 1 2 3 31 31 H 1.09001 * 109.47143 * 59.99943 * 1 2 3 32 32 H 0.96989 * 120.00274 * 95.00083 * 4 2 1 33 33 H 1.08990 * 109.87708 * 298.38739 * 10 9 7 34 34 H 1.08995 * 109.88309 * 59.56063 * 10 9 7 35 35 H 1.08995 * 110.84610 * 219.66561 * 11 10 9 36 36 H 1.09000 * 110.66459 * 96.52327 * 11 10 9 37 37 H 0.96698 * 114.00340 * 168.40281 * 13 12 11 38 38 H 0.97002 * 120.00264 * 180.02562 * 17 16 14 39 39 H 1.08998 * 110.36706 * 322.92921 * 22 9 7 40 40 H 1.08999 * 110.36914 * 85.14682 * 22 9 7 41 41 H 1.08000 * 120.00231 * 0.02562 * 24 23 2 42 42 H 1.08008 * 120.00033 * 180.23351 * 25 24 23 43 43 H 1.08000 * 120.00235 * 179.72389 * 26 25 24 44 44 H 1.07993 * 120.00395 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.00279 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1591 2.4117 7 6 2.6456 -0.7226 3.5773 8 8 2.9350 -1.8998 3.5227 9 7 2.7739 -0.0504 4.7383 10 6 2.4668 1.3729 4.9429 11 6 2.7366 1.6906 6.4289 12 6 2.6483 0.2974 7.1060 13 8 1.2903 -0.0549 7.3778 14 6 3.4767 0.2539 8.3641 15 1 4.5230 -0.0089 8.3128 16 6 2.8990 0.5496 9.5805 17 7 3.5852 0.3888 10.6909 18 14 1.1415 1.1786 9.6515 19 1 0.2053 0.0269 9.7032 20 1 0.9639 2.0156 10.8653 21 1 0.8581 1.9931 8.4427 22 6 3.2519 -0.6186 6.0119 23 6 2.0323 -0.7104 -1.2305 24 6 2.0720 -2.0918 -1.2632 25 6 2.5283 -2.7435 -2.3936 26 6 2.9547 -2.0138 -3.4874 27 6 2.9200 -0.6323 -3.4528 28 6 2.4588 0.0194 -2.3242 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2489 -1.6317 1.1526 33 1 3.1077 1.9851 4.3086 34 1 1.4194 1.5634 4.7092 35 1 1.9752 2.3617 6.8265 36 1 3.7307 2.1191 6.5563 37 1 1.1675 -0.9791 7.6342 38 1 3.1787 0.5965 11.5467 39 1 2.8906 -1.6401 6.1309 40 1 4.3408 -0.5949 6.0530 41 1 1.7427 -2.6619 -0.4071 42 1 2.5557 -3.8229 -2.4206 43 1 3.3153 -2.5229 -4.3690 44 1 3.2535 -0.0621 -4.3071 45 1 2.4316 1.0986 -2.2971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118152425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:27 Heat of formation + Delta-G solvation = -82.076932 kcal Electronic energy + Delta-G solvation = -28360.438713 eV Core-core repulsion = 24343.163246 eV Total energy + Delta-G solvation = -4017.275467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.78484 -39.78178 -38.67537 -37.55522 -35.95075 -34.74924 -32.40060 -32.00436 -31.22989 -30.47776 -29.53099 -28.47514 -26.21063 -24.67236 -23.54369 -22.98456 -22.07635 -20.74310 -20.03821 -19.76884 -17.98714 -17.53873 -16.95614 -16.80555 -16.03216 -15.85226 -15.56131 -15.18825 -14.98202 -14.76409 -14.56219 -14.42220 -13.85961 -13.74902 -13.67925 -13.48133 -13.16945 -12.74636 -12.62009 -12.58721 -12.48365 -12.03112 -11.96686 -11.75011 -11.58909 -11.43979 -11.27583 -11.17324 -10.99874 -10.50431 -10.37129 -10.25767 -9.51235 -9.36726 -9.28959 -9.26081 -9.09687 -8.71698 -8.55568 -8.24653 -6.21651 -4.34229 0.91688 1.02183 1.57974 2.42563 3.35227 3.41154 3.45171 3.52093 3.66030 3.70397 4.17568 4.47111 4.48550 4.49348 4.62034 4.75051 4.93102 4.94873 5.00249 5.10917 5.12668 5.19119 5.35883 5.37262 5.54542 5.57833 5.65965 5.69985 5.74429 5.89387 5.96948 5.99845 6.07328 6.13459 6.14239 6.27639 6.33983 6.44353 6.59559 6.63384 6.75573 7.01538 7.06113 7.40978 7.61921 7.78949 8.09123 8.17053 8.57948 8.78065 9.39446 10.86930 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030871 B = 0.002429 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.769578 B =11526.347088 C =11821.607630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.100 0.900 4 N -0.702 5.702 5 C 0.513 3.487 6 O -0.512 6.512 7 C 0.512 3.488 8 O -0.538 6.538 9 N -0.575 5.575 10 C 0.108 3.892 11 C -0.126 4.126 12 C 0.220 3.780 13 O -0.558 6.558 14 C -0.553 4.553 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.886 5.886 18 Si 0.950 3.050 19 H -0.293 1.293 20 H -0.326 1.326 21 H -0.268 1.268 22 C 0.086 3.914 23 C -0.092 4.092 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.107 4.107 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.411 0.589 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.371 0.629 38 H 0.267 0.733 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.994 -2.347 -26.493 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.079 3.921 3 H 0.118 0.882 4 N -0.357 5.357 5 C 0.294 3.706 6 O -0.386 6.386 7 C 0.294 3.706 8 O -0.417 6.417 9 N -0.307 5.307 10 C -0.015 4.015 11 C -0.164 4.164 12 C 0.179 3.821 13 O -0.366 6.366 14 C -0.590 4.590 15 H 0.100 0.900 16 C -0.130 4.130 17 N -0.521 5.521 18 Si 0.786 3.214 19 H -0.221 1.221 20 H -0.257 1.257 21 H -0.194 1.194 22 C -0.035 4.035 23 C -0.093 4.093 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.125 4.125 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.248 0.752 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.219 0.781 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.119 -1.503 -26.494 26.854 hybrid contribution -0.575 -0.771 0.200 0.982 sum -4.694 -2.274 -26.294 26.806 Atomic orbital electron populations 1.22179 0.93676 1.02788 1.03077 1.19872 0.94569 0.96791 0.80914 0.88170 1.45915 1.66315 1.14951 1.08552 1.20276 0.78734 0.87024 0.84586 1.90748 1.47965 1.15297 1.84627 1.19590 0.80712 0.86607 0.83677 1.90727 1.51127 1.15264 1.84582 1.48462 1.60724 1.12530 1.08948 1.22283 1.01232 0.79825 0.98137 1.23073 1.02976 0.99074 0.91261 1.20267 0.79605 0.89852 0.92329 1.86139 1.29396 1.32022 1.89008 1.21072 0.97954 1.50734 0.89230 0.89986 1.25109 0.99566 0.93298 0.95040 1.69965 1.38342 1.45786 0.98015 0.85657 0.82565 0.78451 0.74765 1.22056 1.25730 1.19413 1.23345 0.99961 0.98947 0.81266 1.19906 0.99951 0.94022 0.95404 1.20992 0.99786 0.93773 0.98492 1.21164 0.98705 1.00130 0.93310 1.21210 0.99705 0.94265 0.98599 1.21156 0.99628 0.94679 0.98083 1.21013 0.98447 1.00030 0.93018 0.92034 0.91277 0.91165 0.75200 0.91352 0.90960 0.89941 0.89542 0.78095 0.92348 0.90622 0.90177 0.85898 0.85756 0.85979 0.85816 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.46 37.16 0.35 -1.08 16 2 C 0.18 1.80 2.78 -69.08 -0.19 1.61 16 3 H 0.10 1.05 7.44 -51.93 -0.39 0.67 16 4 N -0.70 -8.35 5.02 -55.36 -0.28 -8.62 16 5 C 0.51 7.78 7.82 -11.58 -0.09 7.68 16 6 O -0.51 -8.44 13.79 5.50 0.08 -8.36 16 7 C 0.51 8.99 7.91 -11.59 -0.09 8.90 16 8 O -0.54 -10.18 16.73 5.50 0.09 -10.09 16 9 N -0.57 -10.59 3.33 -171.00 -0.57 -11.16 16 10 C 0.11 1.91 5.49 -3.05 -0.02 1.89 16 11 C -0.13 -2.48 5.90 -24.89 -0.15 -2.63 16 12 C 0.22 4.78 0.70 -89.61 -0.06 4.71 16 13 O -0.56 -12.00 8.52 -35.23 -0.30 -12.30 16 14 C -0.55 -14.30 8.88 -34.44 -0.31 -14.61 16 15 H 0.08 2.30 8.00 -52.48 -0.42 1.88 16 16 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 17 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 18 Si 0.95 23.12 24.93 -169.99 -4.24 18.88 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.33 -8.16 7.11 56.52 0.40 -7.76 16 21 H -0.27 -6.41 5.42 56.52 0.31 -6.10 16 22 C 0.09 1.70 6.07 -2.52 -0.02 1.69 16 23 C -0.09 -0.81 4.96 -104.63 -0.52 -1.33 16 24 C -0.11 -0.94 9.06 -39.58 -0.36 -1.30 16 25 C -0.12 -0.86 10.05 -39.59 -0.40 -1.26 16 26 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 27 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 28 C -0.11 -0.84 9.67 -39.58 -0.38 -1.22 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.41 4.55 6.33 -40.82 -0.26 4.29 16 33 H 0.07 1.13 7.71 -51.93 -0.40 0.73 16 34 H 0.07 1.30 7.57 -51.93 -0.39 0.91 16 35 H 0.08 1.67 6.65 -51.93 -0.35 1.33 16 36 H 0.09 1.66 8.03 -51.93 -0.42 1.24 16 37 H 0.37 7.07 8.99 45.56 0.41 7.48 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.08 1.48 8.02 -51.93 -0.42 1.06 16 40 H 0.08 1.59 7.99 -51.93 -0.41 1.17 16 41 H 0.12 0.93 6.90 -52.49 -0.36 0.57 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.80 8.04 -52.49 -0.42 0.38 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -31.61 368.77 -7.60 -39.21 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.59 Total: 9.44 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -3.12 Total: 2.57 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.07 Total: -44.90 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.13 Total: -30.75 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.24 Total: 18.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.61 -7.60 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118152425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.864 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds