Wall clock time and date at job start Tue Mar 31 2020 18:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46862 * 2 1 4 4 N 1.46498 * 109.46728 * 120.00170 * 2 1 3 5 5 C 1.34783 * 119.99791 * 274.99415 * 4 2 1 6 6 O 1.21351 * 119.99858 * 0.02562 * 5 4 2 7 7 C 1.49449 * 120.00090 * 180.02562 * 5 4 2 8 8 O 1.21351 * 120.00052 * 0.02562 * 7 5 4 9 9 N 1.34770 * 120.00106 * 180.02562 * 7 5 4 10 10 C 1.47029 * 125.64701 * 359.69597 * 9 7 5 11 11 C 1.54341 * 107.26204 * 178.84665 * 10 9 7 12 12 C 1.55155 * 103.02218 * 338.13966 * 11 10 9 13 13 O 1.42898 * 111.00555 * 277.23233 * 12 11 10 14 14 C 1.50695 * 111.03627 * 153.39651 * 12 11 10 15 15 H 1.08003 * 120.00030 * 272.60920 * 14 12 11 16 16 C 1.37878 * 120.00266 * 92.60733 * 14 12 11 17 17 N 1.31516 * 120.00183 * 173.51864 * 16 14 12 18 18 Si 1.86796 * 119.99798 * 353.51899 * 16 14 12 19 19 H 1.48509 * 109.46959 * 87.32494 * 18 16 14 20 20 H 1.48500 * 109.47358 * 207.31891 * 18 16 14 21 21 H 1.48492 * 109.47208 * 327.32261 * 18 16 14 22 22 C 1.47426 * 125.64921 * 180.02562 * 9 7 5 23 23 C 1.50700 * 109.47104 * 240.00073 * 2 1 3 24 24 C 1.38238 * 119.99666 * 279.72556 * 23 2 1 25 25 C 1.38230 * 119.99794 * 179.76640 * 24 23 2 26 26 C 1.38235 * 120.00060 * 0.51036 * 25 24 23 27 27 C 1.38234 * 120.00067 * 359.74481 * 26 25 24 28 28 C 1.38227 * 120.00111 * 100.00406 * 23 2 1 29 29 H 1.08997 * 109.47358 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47215 * 300.00703 * 1 2 3 31 31 H 1.09001 * 109.47143 * 59.99943 * 1 2 3 32 32 H 0.96989 * 120.00274 * 95.00083 * 4 2 1 33 33 H 1.08990 * 109.87708 * 298.38739 * 10 9 7 34 34 H 1.08995 * 109.88309 * 59.56063 * 10 9 7 35 35 H 1.08995 * 110.84610 * 219.66561 * 11 10 9 36 36 H 1.09000 * 110.66459 * 96.52327 * 11 10 9 37 37 H 0.96698 * 114.00340 * 168.40281 * 13 12 11 38 38 H 0.97002 * 120.00264 * 180.02562 * 17 16 14 39 39 H 1.08998 * 110.36706 * 322.92921 * 22 9 7 40 40 H 1.08999 * 110.36914 * 85.14682 * 22 9 7 41 41 H 1.08000 * 120.00231 * 0.02562 * 24 23 2 42 42 H 1.08008 * 120.00033 * 180.23351 * 25 24 23 43 43 H 1.08000 * 120.00235 * 179.72389 * 26 25 24 44 44 H 1.07993 * 120.00395 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.00279 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1591 2.4117 7 6 2.6456 -0.7226 3.5773 8 8 2.9350 -1.8998 3.5227 9 7 2.7739 -0.0504 4.7383 10 6 2.4668 1.3729 4.9429 11 6 2.7366 1.6906 6.4289 12 6 2.6483 0.2974 7.1060 13 8 1.2903 -0.0549 7.3778 14 6 3.4767 0.2539 8.3641 15 1 4.5230 -0.0089 8.3128 16 6 2.8990 0.5496 9.5805 17 7 3.5852 0.3888 10.6909 18 14 1.1415 1.1786 9.6515 19 1 0.2053 0.0269 9.7032 20 1 0.9639 2.0156 10.8653 21 1 0.8581 1.9931 8.4427 22 6 3.2519 -0.6186 6.0119 23 6 2.0323 -0.7104 -1.2305 24 6 2.0720 -2.0918 -1.2632 25 6 2.5283 -2.7435 -2.3936 26 6 2.9547 -2.0138 -3.4874 27 6 2.9200 -0.6323 -3.4528 28 6 2.4588 0.0194 -2.3242 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2489 -1.6317 1.1526 33 1 3.1077 1.9851 4.3086 34 1 1.4194 1.5634 4.7092 35 1 1.9752 2.3617 6.8265 36 1 3.7307 2.1191 6.5563 37 1 1.1675 -0.9791 7.6342 38 1 3.1787 0.5965 11.5467 39 1 2.8906 -1.6401 6.1309 40 1 4.3408 -0.5949 6.0530 41 1 1.7427 -2.6619 -0.4071 42 1 2.5557 -3.8229 -2.4206 43 1 3.3153 -2.5229 -4.3690 44 1 3.2535 -0.0621 -4.3071 45 1 2.4316 1.0986 -2.2971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118152425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:26 Heat of formation + Delta-G solvation = -104.560035 kcal Electronic energy + Delta-G solvation = -28361.413654 eV Core-core repulsion = 24343.163246 eV Total energy + Delta-G solvation = -4018.250408 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99776 -40.72124 -39.85072 -39.04212 -36.99114 -36.23256 -34.46264 -32.84677 -32.09925 -31.78788 -30.23447 -30.05938 -27.86530 -25.91225 -24.58815 -23.77111 -23.24456 -21.69927 -21.48716 -21.07143 -19.56209 -19.03138 -18.08462 -17.74347 -17.39748 -17.08727 -16.89051 -16.64333 -16.20817 -15.94577 -15.65488 -15.44759 -15.20132 -14.83596 -14.55120 -14.53492 -14.27619 -14.15837 -14.05685 -13.89752 -13.43012 -13.35121 -13.28399 -13.12793 -12.81373 -12.65553 -12.58874 -12.31366 -12.21181 -12.00298 -11.99627 -11.80466 -11.24805 -10.73359 -10.63029 -10.46840 -10.42159 -9.84729 -9.77383 -9.70773 -8.33990 -6.47550 0.27063 0.34699 0.47328 1.20684 1.50744 1.54662 1.75424 2.06535 2.39577 2.46264 2.85474 2.96787 3.24221 3.47042 3.50197 3.79329 3.90197 4.00786 4.09006 4.21803 4.24261 4.24808 4.29797 4.36682 4.57680 4.59786 4.64090 4.69314 4.76698 4.83208 4.90603 5.01329 5.04525 5.09234 5.17219 5.18759 5.19735 5.31530 5.50333 5.53324 5.60876 5.61427 5.94178 6.05237 6.07426 6.24526 6.54829 6.59338 6.85932 6.90978 7.30330 8.78496 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030871 B = 0.002429 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.769578 B =11526.347088 C =11821.607630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.184 3.816 3 H 0.095 0.905 4 N -0.687 5.687 5 C 0.518 3.482 6 O -0.526 6.526 7 C 0.510 3.490 8 O -0.553 6.553 9 N -0.580 5.580 10 C 0.120 3.880 11 C -0.123 4.123 12 C 0.217 3.783 13 O -0.560 6.560 14 C -0.545 4.545 15 H 0.050 0.950 16 C 0.028 3.972 17 N -0.934 5.934 18 Si 1.006 2.994 19 H -0.285 1.285 20 H -0.337 1.337 21 H -0.258 1.258 22 C 0.095 3.905 23 C -0.104 4.104 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.116 4.116 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.415 0.585 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.381 0.619 38 H 0.267 0.733 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.058 -2.292 -29.454 29.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.081 3.919 3 H 0.113 0.887 4 N -0.341 5.341 5 C 0.298 3.702 6 O -0.402 6.402 7 C 0.294 3.706 8 O -0.433 6.433 9 N -0.312 5.312 10 C -0.002 4.002 11 C -0.162 4.162 12 C 0.177 3.823 13 O -0.369 6.369 14 C -0.583 4.583 15 H 0.068 0.932 16 C -0.172 4.172 17 N -0.571 5.571 18 Si 0.840 3.160 19 H -0.212 1.212 20 H -0.270 1.270 21 H -0.184 1.184 22 C -0.027 4.027 23 C -0.105 4.105 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.134 4.134 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.253 0.747 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.231 0.769 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.143 0.857 42 H 0.157 0.843 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.192 -1.474 -29.513 30.002 hybrid contribution -0.160 -0.879 1.002 1.343 sum -5.352 -2.353 -28.510 29.104 Atomic orbital electron populations 1.22137 0.92900 1.03095 1.03087 1.19985 0.95114 0.96417 0.80397 0.88686 1.45939 1.64850 1.15104 1.08182 1.19806 0.79094 0.86746 0.84579 1.90744 1.49083 1.15658 1.84757 1.20063 0.80007 0.86475 0.84085 1.90716 1.51611 1.16037 1.84928 1.48446 1.61160 1.12771 1.08821 1.22189 1.01718 0.79589 0.96720 1.22999 1.03150 0.97534 0.92476 1.20133 0.79299 0.91766 0.91138 1.86094 1.28754 1.33127 1.88906 1.21281 0.97084 1.48959 0.90983 0.93185 1.25815 1.02874 0.93755 0.94802 1.70074 1.40138 1.48229 0.98688 0.84739 0.78769 0.78079 0.74400 1.21204 1.26987 1.18383 1.23036 0.99522 0.98517 0.81638 1.19836 1.01168 0.94254 0.95194 1.21124 1.00300 0.93776 0.99120 1.21426 0.98445 1.01127 0.93180 1.21544 0.98957 0.94472 0.99133 1.21461 0.99061 0.95048 0.98440 1.21229 0.98328 1.00766 0.93065 0.91579 0.92916 0.89438 0.74671 0.89781 0.90721 0.90145 0.89315 0.76906 0.92380 0.90570 0.90697 0.85687 0.84251 0.83916 0.83783 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.46 71.98 0.68 -1.84 16 2 C 0.18 3.34 2.78 44.25 0.12 3.46 16 3 H 0.10 1.86 7.44 -2.39 -0.02 1.84 16 4 N -0.69 -15.31 5.02 -447.42 -2.25 -17.56 16 5 C 0.52 14.91 7.82 87.27 0.68 15.59 16 6 O -0.53 -16.45 13.79 -3.25 -0.04 -16.50 16 7 C 0.51 17.24 7.91 87.27 0.69 17.93 16 8 O -0.55 -20.30 16.73 -3.25 -0.05 -20.35 16 9 N -0.58 -20.58 3.33 -813.30 -2.70 -23.28 16 10 C 0.12 4.03 5.49 86.73 0.48 4.51 16 11 C -0.12 -4.70 5.90 31.79 0.19 -4.51 16 12 C 0.22 9.26 0.70 -10.14 -0.01 9.25 16 13 O -0.56 -23.11 8.52 -148.98 -1.27 -24.38 16 14 C -0.55 -28.52 8.88 25.60 0.23 -28.29 16 15 H 0.05 2.89 8.00 -2.91 -0.02 2.87 16 16 C 0.03 1.53 5.46 84.65 0.46 2.00 16 17 N -0.93 -55.78 13.96 21.45 0.30 -55.48 16 18 Si 1.01 47.41 24.93 68.60 1.71 49.12 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.34 -16.45 7.11 99.48 0.71 -15.75 16 21 H -0.26 -11.65 5.42 99.48 0.54 -11.12 16 22 C 0.10 3.68 6.07 86.86 0.53 4.21 16 23 C -0.10 -1.65 4.96 -19.87 -0.10 -1.75 16 24 C -0.12 -1.88 9.06 22.27 0.20 -1.68 16 25 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 26 C -0.12 -1.40 10.05 22.27 0.22 -1.17 16 27 C -0.12 -1.42 10.05 22.27 0.22 -1.19 16 28 C -0.12 -1.58 9.67 22.27 0.22 -1.37 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.41 8.62 6.33 -92.72 -0.59 8.04 16 33 H 0.08 2.60 7.71 -2.39 -0.02 2.58 16 34 H 0.07 2.52 7.57 -2.39 -0.02 2.50 16 35 H 0.08 3.11 6.65 -2.39 -0.02 3.09 16 36 H 0.09 3.31 8.03 -2.39 -0.02 3.29 16 37 H 0.38 13.90 8.99 -74.06 -0.67 13.24 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.08 2.93 8.02 -2.39 -0.02 2.91 16 40 H 0.07 2.97 7.99 -2.39 -0.02 2.95 16 41 H 0.13 1.72 6.90 -2.91 -0.02 1.70 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 44 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.14 1.47 8.04 -2.91 -0.02 1.45 16 Total: -1.00 -66.98 368.77 0.34 -66.64 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.39 Total: 28.03 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 5.04 Total: 13.78 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -4.65 Total: -96.33 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -1.37 Total: -61.23 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.71 Total: 49.12 kcal Total: -66.98 0.34 -66.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118152425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.920 kcal (2) G-P(sol) polarization free energy of solvation -66.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds