Wall clock time and date at job start Tue Mar 31 2020 18:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47281 * 2 1 4 4 N 1.46496 * 109.47062 * 119.99984 * 2 1 3 5 5 C 1.34782 * 120.00237 * 275.00044 * 4 2 1 6 6 O 1.21350 * 119.99489 * 359.97438 * 5 4 2 7 7 C 1.49449 * 120.00207 * 180.02562 * 5 4 2 8 8 O 1.21349 * 119.99754 * 359.97438 * 7 5 4 9 9 N 1.34772 * 119.99933 * 180.02562 * 7 5 4 10 10 C 1.47021 * 125.64937 * 359.94885 * 9 7 5 11 11 C 1.54370 * 107.28813 * 181.13182 * 10 9 7 12 12 C 1.55147 * 102.92092 * 22.14333 * 11 10 9 13 13 O 1.42905 * 111.00578 * 82.63751 * 12 11 10 14 14 C 1.50702 * 111.00308 * 206.45025 * 12 11 10 15 15 H 1.08002 * 120.00299 * 356.82421 * 14 12 11 16 16 C 1.37884 * 119.99942 * 176.53980 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.47423 * 125.64837 * 179.97438 * 9 7 5 23 23 C 1.50699 * 109.46987 * 239.99996 * 2 1 3 24 24 C 1.38238 * 119.99877 * 279.72331 * 23 2 1 25 25 C 1.38234 * 119.99616 * 179.77028 * 24 23 2 26 26 C 1.38233 * 120.00407 * 0.50894 * 25 24 23 27 27 C 1.38237 * 119.99663 * 359.74654 * 26 25 24 28 28 C 1.38232 * 120.00259 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46916 * 60.00061 * 1 2 3 30 30 H 1.09001 * 109.46891 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46928 * 300.00436 * 1 2 3 32 32 H 0.97005 * 120.00279 * 94.99911 * 4 2 1 33 33 H 1.09001 * 109.88518 * 300.52094 * 10 9 7 34 34 H 1.09002 * 109.88165 * 61.68403 * 10 9 7 35 35 H 1.09001 * 110.70699 * 263.79361 * 11 10 9 36 36 H 1.09008 * 110.75075 * 140.51110 * 11 10 9 37 37 H 0.96701 * 113.99475 * 183.17547 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.08996 * 110.36708 * 36.99367 * 22 9 7 40 40 H 1.09002 * 110.46021 * 274.71461 * 22 9 7 41 41 H 1.08000 * 119.99970 * 0.02562 * 24 23 2 42 42 H 1.08004 * 120.00027 * 180.23362 * 25 24 23 43 43 H 1.08006 * 120.00530 * 179.72907 * 26 25 24 44 44 H 1.08002 * 119.99749 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00135 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8589 1.1593 2.4115 7 6 2.6457 -0.7226 3.5773 8 8 2.9343 -1.9000 3.5227 9 7 2.7740 -0.0504 4.7384 10 6 2.4618 1.3714 4.9443 11 6 2.7887 1.7045 6.4157 12 6 3.7982 0.5932 6.8069 13 8 5.1205 0.9299 6.3823 14 6 3.7614 0.3277 8.2899 15 1 3.1251 0.9217 8.9293 16 6 4.5355 -0.6776 8.8297 17 7 5.3102 -1.4009 8.0511 18 14 4.4840 -1.0117 10.6668 19 1 3.4246 -2.0105 10.9588 20 1 5.7987 -1.5406 11.1107 21 1 4.1879 0.2502 11.3915 22 6 3.2510 -0.6189 6.0122 23 6 2.0323 -0.7104 -1.2305 24 6 2.0721 -2.0918 -1.2632 25 6 2.5284 -2.7435 -2.3936 26 6 2.9548 -2.0137 -3.4875 27 6 2.9200 -0.6323 -3.4527 28 6 2.4593 0.0194 -2.3241 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2490 -1.6318 1.1526 33 1 3.0722 1.9848 4.2815 34 1 1.4044 1.5508 4.7493 35 1 1.8919 1.6455 7.0326 36 1 3.2490 2.6893 6.4957 37 1 5.7778 0.2436 6.5616 38 1 5.8551 -2.1079 8.4310 39 1 4.0450 -1.3432 5.8306 40 1 2.4280 -1.0868 6.5525 41 1 1.7427 -2.6619 -0.4071 42 1 2.5559 -3.8229 -2.4207 43 1 3.3154 -2.5228 -4.3691 44 1 3.2535 -0.0621 -4.3072 45 1 2.4325 1.0987 -2.2968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118152427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:31 Heat of formation + Delta-G solvation = -88.576597 kcal Electronic energy + Delta-G solvation = -28391.097798 eV Core-core repulsion = 24373.540484 eV Total energy + Delta-G solvation = -4017.557314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59714 -39.60816 -38.39376 -37.17840 -35.78331 -34.23795 -32.21914 -31.87834 -31.14031 -30.22754 -29.43965 -27.92678 -26.00217 -24.58416 -23.51418 -22.93515 -21.94042 -20.59323 -19.83444 -19.52859 -17.72664 -17.20859 -16.82346 -16.59489 -15.85964 -15.54295 -15.46544 -15.11258 -14.72928 -14.56520 -14.36589 -14.23210 -13.75595 -13.66415 -13.36163 -13.07615 -12.97413 -12.82862 -12.56537 -12.41773 -12.27529 -11.86322 -11.65673 -11.52668 -11.35918 -11.11390 -11.07106 -11.06767 -10.77995 -10.56731 -10.49916 -10.20961 -9.39890 -9.37062 -9.22294 -9.16042 -8.99322 -8.70673 -8.42335 -7.90136 -6.31311 -4.40659 1.00490 1.10699 1.79319 2.63725 3.19307 3.27170 3.30187 3.48522 3.60271 3.90247 4.24692 4.27287 4.57472 4.70177 4.70287 4.83086 4.96440 5.02555 5.04207 5.19453 5.27259 5.44503 5.49003 5.62856 5.66246 5.74655 5.79743 5.84646 5.96132 6.05654 6.11644 6.16147 6.22334 6.29648 6.40314 6.50914 6.68076 6.72689 6.78643 6.83771 7.15917 7.23757 7.30861 7.71387 7.86198 7.98791 8.04639 8.44134 8.63400 9.28315 9.39092 10.76022 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.002482 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.002306 B =11278.424358 C =11771.928629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.100 0.900 4 N -0.703 5.703 5 C 0.513 3.487 6 O -0.516 6.516 7 C 0.507 3.493 8 O -0.539 6.539 9 N -0.573 5.573 10 C 0.111 3.889 11 C -0.122 4.122 12 C 0.249 3.751 13 O -0.582 6.582 14 C -0.536 4.536 15 H 0.068 0.932 16 C 0.070 3.930 17 N -0.894 5.894 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.090 3.910 23 C -0.092 4.092 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.107 4.107 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.411 0.589 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.383 0.617 38 H 0.271 0.729 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.353 0.218 -19.907 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.078 3.922 3 H 0.118 0.882 4 N -0.359 5.359 5 C 0.294 3.706 6 O -0.390 6.390 7 C 0.289 3.711 8 O -0.418 6.418 9 N -0.305 5.305 10 C -0.011 4.011 11 C -0.160 4.160 12 C 0.208 3.792 13 O -0.391 6.391 14 C -0.575 4.575 15 H 0.087 0.913 16 C -0.133 4.133 17 N -0.533 5.533 18 Si 0.733 3.267 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.031 4.031 23 C -0.092 4.092 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.125 4.125 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.248 0.752 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.234 0.766 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.586 0.832 -20.119 21.517 hybrid contribution 0.402 -1.340 1.035 1.740 sum -7.183 -0.508 -19.084 20.398 Atomic orbital electron populations 1.22171 0.93789 1.02708 1.02959 1.19858 0.94479 0.96839 0.81033 0.88218 1.45926 1.66424 1.14958 1.08552 1.20430 0.78454 0.86998 0.84692 1.90721 1.48194 1.15314 1.84801 1.19551 0.81167 0.86731 0.83607 1.90722 1.51183 1.15339 1.84526 1.48642 1.60203 1.12154 1.09472 1.22156 1.00014 0.80857 0.98087 1.22725 0.99547 1.00472 0.93226 1.19628 0.80682 0.87351 0.91540 1.86111 1.19508 1.48367 1.85086 1.21482 1.26447 1.17623 0.91913 0.91346 1.25098 0.94324 0.94875 0.99008 1.69653 1.26669 1.21350 1.35662 0.86374 0.77573 0.78618 0.84184 1.20416 1.20985 1.19648 1.23510 0.99266 1.00089 0.80187 1.19920 0.99866 0.94024 0.95399 1.21000 0.99746 0.93797 0.98459 1.21159 0.98731 1.00111 0.93321 1.21201 0.99773 0.94262 0.98599 1.21147 0.99684 0.94671 0.98085 1.21012 0.98469 1.00015 0.93022 0.91253 0.92079 0.91333 0.75208 0.91154 0.91730 0.90378 0.90491 0.76598 0.91909 0.89310 0.91401 0.85872 0.85781 0.86018 0.85857 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.46 37.16 0.35 -1.18 16 2 C 0.18 2.00 2.78 -69.08 -0.19 1.81 16 3 H 0.10 1.17 7.44 -51.93 -0.39 0.78 16 4 N -0.70 -9.43 5.02 -55.36 -0.28 -9.71 16 5 C 0.51 8.69 7.82 -11.58 -0.09 8.60 16 6 O -0.52 -9.22 13.79 5.50 0.08 -9.15 16 7 C 0.51 10.25 7.91 -11.59 -0.09 10.15 16 8 O -0.54 -11.81 16.73 5.50 0.09 -11.72 16 9 N -0.57 -12.17 3.33 -170.99 -0.57 -12.74 16 10 C 0.11 2.16 5.49 -3.04 -0.02 2.14 16 11 C -0.12 -2.48 6.13 -24.88 -0.15 -2.63 16 12 C 0.25 6.01 0.88 -89.61 -0.08 5.93 16 13 O -0.58 -14.89 13.17 -35.23 -0.46 -15.35 16 14 C -0.54 -13.78 8.26 -34.44 -0.28 -14.06 16 15 H 0.07 1.72 7.78 -52.49 -0.41 1.31 16 16 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 17 N -0.89 -23.49 10.69 55.43 0.59 -22.90 16 18 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 C 0.09 2.15 5.50 -2.52 -0.01 2.13 16 23 C -0.09 -0.90 4.96 -104.62 -0.52 -1.42 16 24 C -0.11 -1.05 9.06 -39.58 -0.36 -1.41 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 28 C -0.11 -0.94 9.67 -39.58 -0.38 -1.33 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.41 5.24 6.33 -40.82 -0.26 4.98 16 33 H 0.07 1.38 7.58 -51.93 -0.39 0.98 16 34 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 35 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 36 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 37 H 0.38 10.04 7.26 45.56 0.33 10.37 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.09 2.34 7.47 -51.93 -0.39 1.95 16 40 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 41 H 0.12 1.07 6.90 -52.49 -0.36 0.71 16 42 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 43 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.13 0.92 8.04 -52.49 -0.42 0.50 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -29.31 374.52 -8.66 -37.97 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -5.61 Total: 16.48 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -3.12 Total: 6.39 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.25 Total: -45.35 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.30 Total: -36.22 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.31 -8.66 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118152427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.606 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds