Wall clock time and date at job start Tue Mar 31 2020 18:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47281 * 2 1 4 4 N 1.46496 * 109.47062 * 119.99984 * 2 1 3 5 5 C 1.34782 * 120.00237 * 275.00044 * 4 2 1 6 6 O 1.21350 * 119.99489 * 359.97438 * 5 4 2 7 7 C 1.49449 * 120.00207 * 180.02562 * 5 4 2 8 8 O 1.21349 * 119.99754 * 359.97438 * 7 5 4 9 9 N 1.34772 * 119.99933 * 180.02562 * 7 5 4 10 10 C 1.47021 * 125.64937 * 359.94885 * 9 7 5 11 11 C 1.54370 * 107.28813 * 181.13182 * 10 9 7 12 12 C 1.55147 * 102.92092 * 22.14333 * 11 10 9 13 13 O 1.42905 * 111.00578 * 82.63751 * 12 11 10 14 14 C 1.50702 * 111.00308 * 206.45025 * 12 11 10 15 15 H 1.08002 * 120.00299 * 356.82421 * 14 12 11 16 16 C 1.37884 * 119.99942 * 176.53980 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.47423 * 125.64837 * 179.97438 * 9 7 5 23 23 C 1.50699 * 109.46987 * 239.99996 * 2 1 3 24 24 C 1.38238 * 119.99877 * 279.72331 * 23 2 1 25 25 C 1.38234 * 119.99616 * 179.77028 * 24 23 2 26 26 C 1.38233 * 120.00407 * 0.50894 * 25 24 23 27 27 C 1.38237 * 119.99663 * 359.74654 * 26 25 24 28 28 C 1.38232 * 120.00259 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46916 * 60.00061 * 1 2 3 30 30 H 1.09001 * 109.46891 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46928 * 300.00436 * 1 2 3 32 32 H 0.97005 * 120.00279 * 94.99911 * 4 2 1 33 33 H 1.09001 * 109.88518 * 300.52094 * 10 9 7 34 34 H 1.09002 * 109.88165 * 61.68403 * 10 9 7 35 35 H 1.09001 * 110.70699 * 263.79361 * 11 10 9 36 36 H 1.09008 * 110.75075 * 140.51110 * 11 10 9 37 37 H 0.96701 * 113.99475 * 183.17547 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.08996 * 110.36708 * 36.99367 * 22 9 7 40 40 H 1.09002 * 110.46021 * 274.71461 * 22 9 7 41 41 H 1.08000 * 119.99970 * 0.02562 * 24 23 2 42 42 H 1.08004 * 120.00027 * 180.23362 * 25 24 23 43 43 H 1.08006 * 120.00530 * 179.72907 * 26 25 24 44 44 H 1.08002 * 119.99749 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00135 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8589 1.1593 2.4115 7 6 2.6457 -0.7226 3.5773 8 8 2.9343 -1.9000 3.5227 9 7 2.7740 -0.0504 4.7384 10 6 2.4618 1.3714 4.9443 11 6 2.7887 1.7045 6.4157 12 6 3.7982 0.5932 6.8069 13 8 5.1205 0.9299 6.3823 14 6 3.7614 0.3277 8.2899 15 1 3.1251 0.9217 8.9293 16 6 4.5355 -0.6776 8.8297 17 7 5.3102 -1.4009 8.0511 18 14 4.4840 -1.0117 10.6668 19 1 3.4246 -2.0105 10.9588 20 1 5.7987 -1.5406 11.1107 21 1 4.1879 0.2502 11.3915 22 6 3.2510 -0.6189 6.0122 23 6 2.0323 -0.7104 -1.2305 24 6 2.0721 -2.0918 -1.2632 25 6 2.5284 -2.7435 -2.3936 26 6 2.9548 -2.0137 -3.4875 27 6 2.9200 -0.6323 -3.4527 28 6 2.4593 0.0194 -2.3241 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2490 -1.6318 1.1526 33 1 3.0722 1.9848 4.2815 34 1 1.4044 1.5508 4.7493 35 1 1.8919 1.6455 7.0326 36 1 3.2490 2.6893 6.4957 37 1 5.7778 0.2436 6.5616 38 1 5.8551 -2.1079 8.4310 39 1 4.0450 -1.3432 5.8306 40 1 2.4280 -1.0868 6.5525 41 1 1.7427 -2.6619 -0.4071 42 1 2.5559 -3.8229 -2.4207 43 1 3.3154 -2.5228 -4.3691 44 1 3.2535 -0.0621 -4.3072 45 1 2.4325 1.0987 -2.2968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118152427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:30 Heat of formation + Delta-G solvation = -108.144597 kcal Electronic energy + Delta-G solvation = -28391.946330 eV Core-core repulsion = 24373.540484 eV Total energy + Delta-G solvation = -4018.405846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.94260 -40.63954 -39.73576 -38.88801 -36.89206 -35.99207 -34.20926 -32.83635 -31.96607 -31.78912 -30.20347 -29.71256 -27.72999 -25.93844 -24.66376 -23.78748 -23.19297 -21.59567 -21.46654 -20.98797 -19.22830 -18.95367 -18.04518 -17.74125 -17.25222 -17.08817 -16.82951 -16.34114 -16.09958 -15.85828 -15.72111 -15.28262 -14.90769 -14.78639 -14.68473 -14.49147 -14.27482 -14.08825 -13.95925 -13.51800 -13.44536 -13.30531 -13.13149 -12.84867 -12.71329 -12.58339 -12.53722 -12.34476 -12.23893 -12.11648 -11.99732 -11.80487 -11.23531 -10.76718 -10.60720 -10.46711 -10.33302 -9.84909 -9.71591 -9.65056 -8.26134 -6.42748 0.29069 0.35178 0.47142 1.26185 1.43683 1.46047 1.55631 2.09094 2.36812 2.48510 2.85698 2.99977 3.27895 3.49991 3.76831 3.90122 4.06318 4.08769 4.14272 4.22328 4.24615 4.29655 4.32117 4.58050 4.60424 4.64843 4.68161 4.74038 4.83724 4.95288 5.01170 5.05365 5.09031 5.13311 5.18158 5.20069 5.33125 5.42753 5.52926 5.60807 5.61005 5.74354 5.94465 6.04199 6.07792 6.34498 6.58223 6.66575 6.88710 7.27848 7.35505 8.79779 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.002482 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.002306 B =11278.424358 C =11771.928629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.183 3.817 3 H 0.094 0.906 4 N -0.687 5.687 5 C 0.520 3.480 6 O -0.525 6.525 7 C 0.501 3.499 8 O -0.562 6.562 9 N -0.581 5.581 10 C 0.119 3.881 11 C -0.115 4.115 12 C 0.233 3.767 13 O -0.589 6.589 14 C -0.554 4.554 15 H 0.071 0.929 16 C 0.027 3.973 17 N -0.916 5.916 18 Si 0.966 3.034 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.267 1.267 22 C 0.104 3.896 23 C -0.105 4.105 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.115 4.115 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.414 0.586 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.376 0.624 38 H 0.271 0.729 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.123 0.877 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 0.713 -21.274 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.080 3.920 3 H 0.112 0.888 4 N -0.341 5.341 5 C 0.301 3.699 6 O -0.401 6.401 7 C 0.284 3.716 8 O -0.442 6.442 9 N -0.313 5.313 10 C -0.003 4.003 11 C -0.153 4.153 12 C 0.192 3.808 13 O -0.397 6.397 14 C -0.592 4.592 15 H 0.089 0.911 16 C -0.174 4.174 17 N -0.555 5.555 18 Si 0.792 3.208 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.019 4.019 23 C -0.105 4.105 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.134 4.134 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.252 0.748 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.141 0.859 42 H 0.157 0.843 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.482 1.336 -21.528 23.177 hybrid contribution 0.696 -1.544 1.345 2.163 sum -7.786 -0.208 -20.182 21.633 Atomic orbital electron populations 1.22128 0.92604 1.03118 1.03202 1.20019 0.95353 0.96364 0.80298 0.88758 1.45957 1.64898 1.15062 1.08205 1.19761 0.78962 0.86704 0.84505 1.90715 1.49173 1.15400 1.84854 1.20237 0.80390 0.86628 0.84337 1.90697 1.51977 1.16505 1.85055 1.48682 1.60527 1.12907 1.09150 1.22181 1.01239 0.79568 0.97298 1.22739 0.99000 0.99533 0.94033 1.19871 0.80642 0.89041 0.91213 1.86104 1.20180 1.48201 1.85222 1.21772 1.26693 1.17884 0.92882 0.91069 1.25831 0.94043 0.94703 1.02850 1.69762 1.27082 1.21590 1.37092 0.85422 0.77390 0.78488 0.79533 1.20108 1.20977 1.19088 1.23098 0.97849 0.99362 0.81546 1.19852 1.01196 0.94251 0.95217 1.21125 1.00393 0.93830 0.99092 1.21423 0.98474 1.01123 0.93188 1.21547 0.98922 0.94480 0.99113 1.21467 0.99006 0.95035 0.98439 1.21235 0.98310 1.00782 0.93049 0.89269 0.91598 0.92745 0.74809 0.91266 0.89552 0.88815 0.89633 0.77432 0.91978 0.92617 0.92320 0.85865 0.84274 0.83802 0.83647 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.46 71.98 0.68 -2.06 16 2 C 0.18 3.81 2.78 44.25 0.12 3.93 16 3 H 0.09 2.10 7.44 -2.39 -0.02 2.08 16 4 N -0.69 -18.03 5.02 -447.43 -2.25 -20.28 16 5 C 0.52 17.40 7.82 87.27 0.68 18.08 16 6 O -0.53 -18.28 13.79 -3.25 -0.04 -18.32 16 7 C 0.50 20.40 7.91 87.27 0.69 21.09 16 8 O -0.56 -25.17 16.73 -3.24 -0.05 -25.23 16 9 N -0.58 -24.84 3.33 -813.24 -2.70 -27.55 16 10 C 0.12 4.49 5.49 86.75 0.48 4.96 16 11 C -0.12 -4.59 6.13 31.80 0.19 -4.39 16 12 C 0.23 11.34 0.88 -10.14 -0.01 11.33 16 13 O -0.59 -30.69 13.17 -148.98 -1.96 -32.65 16 14 C -0.55 -28.53 8.26 25.60 0.21 -28.32 16 15 H 0.07 3.54 7.78 -2.91 -0.02 3.52 16 16 C 0.03 1.37 5.29 84.66 0.45 1.82 16 17 N -0.92 -49.09 10.69 21.45 0.23 -48.87 16 18 Si 0.97 41.22 29.54 68.60 2.03 43.24 16 19 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 22 C 0.10 5.05 5.50 86.86 0.48 5.52 16 23 C -0.10 -1.93 4.96 -19.87 -0.10 -2.03 16 24 C -0.13 -2.24 9.06 22.27 0.20 -2.04 16 25 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 26 C -0.12 -1.63 10.05 22.27 0.22 -1.41 16 27 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 28 C -0.12 -1.83 9.67 22.27 0.22 -1.61 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.41 10.43 6.33 -92.70 -0.59 9.84 16 33 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 34 H 0.09 2.90 7.70 -2.39 -0.02 2.88 16 35 H 0.09 3.40 8.03 -2.39 -0.02 3.39 16 36 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 37 H 0.38 20.38 7.26 -74.06 -0.54 19.84 16 38 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 39 H 0.06 3.06 7.47 -2.39 -0.02 3.04 16 40 H 0.06 2.90 8.03 -2.39 -0.02 2.88 16 41 H 0.12 2.08 6.90 -2.91 -0.02 2.06 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 44 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.14 1.75 8.04 -2.91 -0.02 1.73 16 Total: -1.00 -62.80 374.52 0.11 -62.69 By element: Atomic # 1 Polarization: 45.24 SS G_CDS: -0.10 Total: 45.14 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 4.97 Total: 21.82 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -4.72 Total: -96.69 kcal Atomic # 8 Polarization: -74.14 SS G_CDS: -2.06 Total: -76.20 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -62.80 0.11 -62.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118152427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.457 kcal (2) G-P(sol) polarization free energy of solvation -62.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds