Wall clock time and date at job start Tue Mar 31 2020 16:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99980 * 2 1 4 4 O 1.42899 * 109.47234 * 134.99856 * 3 2 1 5 5 C 1.42904 * 113.99769 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46885 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47198 * 64.99925 * 6 5 4 8 8 C 1.34781 * 120.00091 * 180.02562 * 7 6 5 9 9 O 1.21347 * 119.99863 * 359.97438 * 8 7 6 10 10 C 1.49445 * 119.99867 * 180.02562 * 8 7 6 11 11 O 1.21347 * 120.00269 * 359.97438 * 10 8 7 12 12 N 1.34782 * 119.99988 * 179.97438 * 10 8 7 13 13 C 1.46498 * 120.00212 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.47151 * 180.02562 * 13 12 10 15 15 C 1.38632 * 119.75213 * 269.72575 * 14 13 12 16 16 C 1.37614 * 120.25123 * 179.71891 * 15 14 13 17 17 C 1.40719 * 119.74124 * 0.57305 * 16 15 14 18 18 C 1.41395 * 120.24246 * 179.67718 * 17 16 15 19 19 H 1.07998 * 119.99970 * 155.30784 * 18 17 16 20 20 C 1.39951 * 120.00207 * 335.31835 * 18 17 16 21 21 N 1.30818 * 119.99753 * 342.22830 * 20 18 17 22 22 Si 1.86797 * 120.00021 * 162.22875 * 20 18 17 23 23 H 1.48500 * 109.47048 * 94.66426 * 22 20 18 24 24 H 1.48498 * 109.47252 * 214.66382 * 22 20 18 25 25 H 1.48496 * 109.47461 * 334.66371 * 22 20 18 26 26 C 1.40704 * 119.51466 * 359.70404 * 17 16 15 27 27 C 1.37620 * 119.74516 * 359.97438 * 26 17 16 28 28 H 1.08000 * 119.99817 * 180.02562 * 1 2 3 29 29 H 1.07990 * 119.99949 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00063 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47277 * 14.99334 * 3 2 1 32 32 H 1.09003 * 109.47086 * 254.99658 * 3 2 1 33 33 H 1.08994 * 109.46717 * 60.00009 * 5 4 3 34 34 H 1.09002 * 109.46980 * 299.99395 * 5 4 3 35 35 H 1.08998 * 109.47127 * 305.00052 * 6 5 4 36 36 H 1.08994 * 109.46951 * 184.99822 * 6 5 4 37 37 H 0.97006 * 120.00405 * 359.97438 * 7 6 5 38 38 H 0.96998 * 119.99697 * 359.97438 * 12 10 8 39 39 H 1.08998 * 109.46977 * 60.00213 * 13 12 10 40 40 H 1.09001 * 109.47430 * 300.00116 * 13 12 10 41 41 H 1.08005 * 119.87401 * 359.97438 * 15 14 13 42 42 H 1.07997 * 120.13194 * 180.28480 * 16 15 14 43 43 H 0.97004 * 119.99893 * 180.02562 * 21 20 18 44 44 H 1.08007 * 120.13445 * 179.97438 * 26 17 16 45 45 H 1.08000 * 119.87742 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9084 2.4350 1.0320 6 6 5.0105 2.2543 2.0778 7 7 5.9389 1.2118 1.6337 8 6 6.9960 0.8793 2.4010 9 8 7.1788 1.4438 3.4595 10 6 7.9434 -0.1838 1.9477 11 8 7.7608 -0.7481 0.8890 12 7 9.0007 -0.5160 2.7147 13 6 9.9292 -1.5585 2.2706 14 6 11.0143 -1.7369 3.3010 15 6 12.1791 -0.9906 3.2097 16 6 13.1742 -1.1411 4.1483 17 6 13.0110 -2.0655 5.1966 18 6 14.0296 -2.2337 6.1628 19 1 13.7847 -2.6066 7.1463 20 6 15.3551 -1.9166 5.8448 21 7 15.7181 -1.8029 4.5932 22 14 16.6058 -1.6556 7.2075 23 1 17.3351 -2.9244 7.4595 24 1 17.5702 -0.6029 6.7993 25 1 15.9062 -1.2322 8.4471 26 6 11.8271 -2.8218 5.2760 27 6 10.8425 -2.6499 4.3300 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9352 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4756 1.4867 -0.9927 33 1 3.2689 3.2696 1.3191 34 1 4.3588 2.6396 0.0607 35 1 4.5647 1.9627 3.0288 36 1 5.5506 3.1928 2.2023 37 1 5.7926 0.7602 0.7878 38 1 9.1469 -0.0647 3.5608 39 1 10.3750 -1.2669 1.3197 40 1 9.3891 -2.4971 2.1460 41 1 12.3042 -0.2855 2.4013 42 1 14.0788 -0.5554 4.0779 43 1 16.6369 -1.5835 4.3727 44 1 11.6916 -3.5344 6.0762 45 1 9.9327 -3.2289 4.3891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118623685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:27 Heat of formation + Delta-G solvation = -103.404904 kcal Electronic energy + Delta-G solvation = -26280.239321 eV Core-core repulsion = 22262.039003 eV Total energy + Delta-G solvation = -4018.200318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.68841 -39.95590 -39.35154 -39.03307 -36.68828 -36.04931 -35.10041 -34.53210 -32.15023 -31.19064 -30.81901 -28.89987 -26.91551 -26.21404 -24.73451 -23.14492 -22.91051 -21.87130 -21.47023 -20.85668 -19.67901 -19.24873 -18.10578 -17.92100 -17.25657 -17.15314 -17.00761 -16.58425 -16.25838 -16.11952 -15.78456 -15.72432 -15.44347 -15.09371 -14.81893 -14.39147 -14.25903 -13.99840 -13.83962 -13.61888 -13.46651 -13.33029 -13.14902 -12.98209 -12.78730 -12.73659 -12.40847 -12.38706 -12.17714 -11.84978 -11.51330 -11.31257 -11.05532 -10.92974 -10.71045 -10.35064 -10.23536 -10.20501 -9.40683 -9.30008 -8.67980 -6.37967 0.34498 0.77490 1.13106 1.24620 1.35409 1.39347 1.52098 1.58355 2.14403 2.19661 2.58438 2.75130 2.87677 3.47652 3.73572 3.81715 4.11065 4.11461 4.15400 4.23360 4.28495 4.45159 4.46008 4.50427 4.61537 4.63499 4.63614 4.72890 4.80277 4.99797 5.03486 5.13729 5.15072 5.20543 5.34246 5.42100 5.67434 5.67583 5.72720 5.85370 5.97000 6.07744 6.17577 6.21279 6.34892 6.37848 6.66610 6.72409 6.90685 6.94324 6.99432 8.28854 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030048 B = 0.001654 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.623609 B =16926.069498 C =17178.917825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.176 4.176 3 C 0.087 3.913 4 O -0.408 6.408 5 C 0.052 3.948 6 C 0.116 3.884 7 N -0.684 5.684 8 C 0.509 3.491 9 O -0.545 6.545 10 C 0.502 3.498 11 O -0.549 6.549 12 N -0.683 5.683 13 C 0.191 3.809 14 C -0.234 4.234 15 C -0.081 4.081 16 C -0.192 4.192 17 C 0.086 3.914 18 C -0.496 4.496 19 H 0.077 0.923 20 C 0.037 3.963 21 N -0.819 5.819 22 Si 0.981 3.019 23 H -0.262 1.262 24 H -0.265 1.265 25 H -0.259 1.259 26 C -0.244 4.244 27 C -0.067 4.067 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.419 0.581 38 H 0.413 0.587 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.290 0.710 44 H 0.099 0.901 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.137 9.224 -9.316 26.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C 0.011 3.989 4 O -0.329 6.329 5 C -0.024 4.024 6 C -0.007 4.007 7 N -0.338 5.338 8 C 0.290 3.710 9 O -0.423 6.423 10 C 0.282 3.718 11 O -0.428 6.428 12 N -0.335 5.335 13 C 0.069 3.931 14 C -0.236 4.236 15 C -0.100 4.100 16 C -0.212 4.212 17 C 0.084 3.916 18 C -0.525 4.525 19 H 0.095 0.905 20 C -0.179 4.179 21 N -0.445 5.445 22 Si 0.802 3.198 23 H -0.187 1.187 24 H -0.190 1.190 25 H -0.183 1.183 26 C -0.264 4.264 27 C -0.086 4.086 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.257 0.743 38 H 0.250 0.750 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.913 9.108 -9.376 26.380 hybrid contribution 0.898 -0.021 0.421 0.992 sum -22.015 9.088 -8.955 25.445 Atomic orbital electron populations 1.24042 0.95221 1.03322 0.98237 1.22839 0.96290 0.98303 1.01993 1.21669 0.88585 0.96113 0.92529 1.87943 1.45515 1.37939 1.61463 1.22864 0.92209 0.88309 0.99059 1.21727 0.89073 0.91366 0.98500 1.45723 1.24619 1.39364 1.24081 1.20071 0.82834 0.83539 0.84577 1.90769 1.74351 1.53928 1.23246 1.20289 0.82727 0.84048 0.84712 1.90723 1.74394 1.54441 1.23212 1.46280 1.24712 1.38629 1.23846 1.19967 0.87719 0.89999 0.95404 1.19188 0.96902 1.06078 1.01406 1.20781 0.93428 0.98129 0.97619 1.21260 0.99414 1.01783 0.98705 1.18029 0.92339 0.89125 0.92149 1.19910 0.92609 1.40217 0.99803 0.90490 1.26769 1.01270 0.91368 0.98504 1.69866 1.20330 1.33918 1.20369 0.85205 0.77046 0.79171 0.78403 1.18672 1.18985 1.18280 1.21164 0.97569 1.04714 1.02952 1.20716 0.97430 0.96785 0.93635 0.87131 0.87070 0.87666 0.91160 0.91180 0.88687 0.90682 0.90939 0.88060 0.74325 0.75003 0.91142 0.90821 0.87478 0.88099 0.89958 0.88326 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 14.31 67.78 0.97 -0.66 16 2 C -0.18 -2.23 9.89 25.65 0.25 -1.97 16 3 C 0.09 0.94 6.35 71.24 0.45 1.39 16 4 O -0.41 -6.21 10.27 -148.98 -1.53 -7.74 16 5 C 0.05 0.52 6.07 71.98 0.44 0.95 16 6 C 0.12 1.75 6.06 86.38 0.52 2.27 16 7 N -0.68 -14.08 5.50 -464.42 -2.55 -16.63 16 8 C 0.51 13.99 7.89 87.27 0.69 14.67 16 9 O -0.55 -17.43 16.48 -3.24 -0.05 -17.49 16 10 C 0.50 15.31 7.89 87.27 0.69 16.00 16 11 O -0.55 -18.27 16.48 -3.24 -0.05 -18.33 16 12 N -0.68 -21.67 5.54 -468.15 -2.59 -24.27 16 13 C 0.19 6.44 5.79 85.63 0.50 6.93 16 14 C -0.23 -9.45 5.27 -19.67 -0.10 -9.56 16 15 C -0.08 -3.60 9.67 22.22 0.21 -3.38 16 16 C -0.19 -9.90 8.70 22.73 0.20 -9.70 16 17 C 0.09 4.59 5.57 -21.29 -0.12 4.47 16 18 C -0.50 -26.49 9.05 23.46 0.21 -26.28 16 19 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 20 C 0.04 1.82 5.14 85.26 0.44 2.26 16 21 N -0.82 -42.27 10.97 21.83 0.24 -42.03 16 22 Si 0.98 37.65 29.59 68.60 2.03 39.68 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 C -0.24 -11.75 9.80 22.73 0.22 -11.53 16 27 C -0.07 -2.82 9.67 22.22 0.21 -2.60 16 28 H 0.11 0.88 8.06 -2.91 -0.02 0.85 16 29 H 0.11 0.72 7.90 -2.92 -0.02 0.70 16 30 H 0.11 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.07 0.53 7.86 -2.39 -0.02 0.51 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.42 8.02 7.94 -92.70 -0.74 7.29 16 38 H 0.41 13.31 7.94 -92.71 -0.74 12.57 16 39 H 0.07 2.34 8.08 -2.39 -0.02 2.32 16 40 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 41 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 42 H 0.10 5.47 6.18 -2.91 -0.02 5.45 16 43 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 44 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 45 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -64.09 394.44 0.82 -63.27 By element: Atomic # 1 Polarization: 40.72 SS G_CDS: -0.46 Total: 40.26 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 5.79 Total: -16.73 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -4.91 Total: -82.93 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.64 Total: -43.55 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -64.09 0.82 -63.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118623685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.134 kcal (2) G-P(sol) polarization free energy of solvation -64.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds