Wall clock time and date at job start Tue Mar 31 2020 16:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47125 * 2 1 4 4 O 1.42899 * 109.47108 * 239.99955 * 2 1 3 5 5 C 1.35802 * 117.00080 * 269.76184 * 4 2 1 6 6 C 1.38832 * 119.92687 * 6.00606 * 5 4 2 7 7 C 1.37792 * 120.14734 * 179.76396 * 6 5 4 8 8 C 1.39702 * 120.00349 * 0.51581 * 7 6 5 9 9 C 1.47601 * 120.06796 * 179.76306 * 8 7 6 10 10 O 1.21592 * 119.99910 * 140.49130 * 9 8 7 11 11 N 1.34775 * 120.00428 * 320.49055 * 9 8 7 12 12 C 1.46509 * 120.00214 * 177.68534 * 11 9 8 13 13 C 1.50694 * 109.47067 * 90.00054 * 12 11 9 14 14 H 1.08005 * 120.00261 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00084 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99606 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00381 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47245 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47660 * 119.99157 * 17 15 13 20 20 H 1.48500 * 109.46936 * 239.99829 * 17 15 13 21 21 C 1.46495 * 119.99995 * 357.68041 * 11 9 8 22 22 C 1.53009 * 109.47240 * 104.65991 * 21 11 9 23 23 C 1.47192 * 109.47240 * 185.53981 * 22 21 11 24 24 N 6.30591 * 101.67513 * 133.16943 * 2 1 3 25 25 C 1.39726 * 119.85814 * 359.74090 * 8 7 6 26 26 C 1.38143 * 119.85468 * 0.02562 * 25 8 7 27 27 O 1.35992 * 120.00811 * 179.97438 * 26 25 8 28 28 H 1.08997 * 109.47378 * 300.00364 * 1 2 3 29 29 H 1.08998 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47113 * 60.00200 * 1 2 3 31 31 H 1.08992 * 109.46728 * 119.99911 * 2 1 3 32 32 H 1.08997 * 109.47290 * 59.99582 * 3 2 1 33 33 H 1.08995 * 109.47082 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46962 * 299.99892 * 3 2 1 35 35 H 1.08006 * 119.92778 * 0.02640 * 6 5 4 36 36 H 1.08004 * 119.99524 * 180.23339 * 7 6 5 37 37 H 1.08997 * 109.46821 * 209.99719 * 12 11 9 38 38 H 1.08995 * 109.46885 * 329.99484 * 12 11 9 39 39 H 0.97000 * 119.99610 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47815 * 224.65926 * 21 11 9 41 41 H 1.09000 * 109.47203 * 344.66705 * 21 11 9 42 42 H 1.09003 * 109.46607 * 305.54355 * 22 21 11 43 43 H 1.08999 * 109.46381 * 65.53804 * 22 21 11 44 44 H 1.08001 * 120.07300 * 180.02562 * 25 8 7 45 45 H 0.96701 * 114.00009 * 270.02081 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2166 -2.0113 -1.0637 6 6 1.8519 -2.6825 0.0956 7 6 2.0587 -4.0406 0.2031 8 6 2.6464 -4.7434 -0.8515 9 6 2.8734 -6.1972 -0.7358 10 8 2.6833 -6.9205 -1.6946 11 7 3.2913 -6.7232 0.4326 12 6 3.4679 -8.1718 0.5624 13 6 4.8779 -8.5421 0.1810 14 1 5.5730 -7.7753 -0.1276 15 6 5.2805 -9.8601 0.2251 16 7 4.4339 -10.7940 0.6004 17 14 7.0285 -10.3191 -0.2470 18 1 7.7762 -9.0941 -0.6286 19 1 7.6988 -10.9688 0.9079 20 1 7.0003 -11.2593 -1.3961 21 6 3.5692 -5.8464 1.5728 22 6 2.4310 -5.9558 2.5896 23 6 2.6428 -4.9790 3.6701 24 7 2.8061 -4.2250 4.5040 25 6 3.0184 -4.0672 -2.0163 26 6 2.8040 -2.7064 -2.1197 27 8 3.1654 -2.0451 -3.2517 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.4012 -2.1397 0.9133 36 1 1.7706 -4.5609 1.1046 37 1 3.2804 -8.4697 1.5940 38 1 2.7668 -8.6837 -0.0967 39 1 4.7172 -11.7211 0.6317 40 1 4.5059 -6.1467 2.0424 41 1 3.6499 -4.8158 1.2274 42 1 1.4814 -5.7508 2.0953 43 1 2.4131 -6.9622 3.0079 44 1 3.4727 -4.6072 -2.8339 45 1 4.0693 -1.7019 -3.2352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198292225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:27 Heat of formation + Delta-G solvation = -52.085546 kcal Electronic energy + Delta-G solvation = -28517.395041 eV Core-core repulsion = 24501.420097 eV Total energy + Delta-G solvation = -4015.974943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86091 -39.51049 -38.08465 -36.98251 -36.31073 -35.34816 -33.49501 -32.87977 -31.03336 -30.52084 -29.65456 -27.66387 -27.24550 -24.34157 -24.03197 -23.22644 -22.41314 -21.07797 -19.47627 -18.56511 -17.98376 -17.63785 -16.74292 -16.48777 -16.20785 -15.84318 -15.50105 -15.17062 -14.80241 -14.72569 -14.55300 -14.21607 -14.18911 -13.56173 -13.49848 -13.25641 -13.01033 -12.81333 -12.68373 -12.55233 -12.52107 -12.39214 -12.11637 -11.89618 -11.79331 -11.61721 -11.30444 -11.21237 -11.05432 -10.92342 -10.80244 -10.67932 -10.64821 -10.21499 -9.72119 -9.18224 -8.98243 -8.49688 -8.19686 -7.88846 -6.11233 -4.15555 0.96836 1.10956 2.66665 2.74404 2.87260 3.11310 3.27082 3.35377 3.37613 3.49532 3.74018 4.07085 4.18156 4.37783 4.40461 4.51350 4.62135 4.71708 4.81597 4.89846 5.00733 5.07749 5.10056 5.16668 5.24315 5.26262 5.35464 5.39384 5.42150 5.55230 5.70848 5.71285 5.78215 5.79846 5.99113 5.99667 6.09466 6.28356 6.47522 6.89852 7.06204 7.30774 7.37799 7.50638 7.63277 7.85063 8.13783 8.18348 8.78299 8.93303 9.50071 10.97008 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.003308 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.919520 B = 8462.649373 C = 9720.493832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 C -0.149 4.149 4 O -0.299 6.299 5 C 0.122 3.878 6 C -0.206 4.206 7 C -0.071 4.071 8 C -0.140 4.140 9 C 0.552 3.448 10 O -0.524 6.524 11 N -0.589 5.589 12 C 0.244 3.756 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.106 3.894 22 C -0.058 4.058 23 C 0.216 3.784 24 N -0.441 5.441 25 C -0.053 4.053 26 C 0.066 3.934 27 O -0.484 6.484 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.263 0.737 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.146 0.854 45 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.886 20.639 1.617 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 C -0.206 4.206 4 O -0.212 6.212 5 C 0.075 3.925 6 C -0.225 4.225 7 C -0.089 4.089 8 C -0.143 4.143 9 C 0.339 3.661 10 O -0.400 6.400 11 N -0.320 5.320 12 C 0.126 3.874 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.020 4.020 22 C -0.099 4.099 23 C -0.102 4.102 24 N -0.119 5.119 25 C -0.073 4.073 26 C 0.020 3.980 27 O -0.292 6.292 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.164 0.836 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.300 21.142 2.032 22.154 hybrid contribution 1.277 -0.596 -0.113 1.414 sum -5.023 20.546 1.920 21.238 Atomic orbital electron populations 1.22339 0.94757 1.03285 1.03144 1.22540 0.94635 0.93749 0.87610 1.21874 1.02104 0.93587 1.03075 1.86168 1.80433 1.17344 1.37301 1.19594 0.96019 0.83258 0.93580 1.21095 1.07785 0.95485 0.98150 1.21607 0.95711 0.93420 0.98194 1.19985 1.04418 0.94898 0.95025 1.18039 0.78189 0.86395 0.83482 1.90804 1.51290 1.61192 1.36752 1.48117 1.64436 1.10017 1.09417 1.19396 0.97809 0.72227 0.98010 1.21440 0.96663 0.92960 1.45600 0.92235 1.24912 0.97760 0.96237 0.95062 1.69926 1.34791 1.00969 1.47548 0.86458 0.84342 0.78554 0.78173 1.19775 1.20993 1.20870 1.21599 0.97121 0.96070 0.87212 1.20024 1.02111 0.96719 0.91010 1.29055 0.93229 0.93832 0.94130 1.81205 1.08647 1.11021 1.10982 1.21334 0.96778 0.92212 0.96941 1.17538 1.04027 0.89830 0.86587 1.84916 1.35589 1.74020 1.34708 0.90959 0.91714 0.91337 0.90547 0.90524 0.91671 0.91402 0.84619 0.84139 0.94456 0.93397 0.92697 0.89000 0.89532 0.87083 0.85785 0.83646 0.76040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.32 37.16 0.35 -0.95 16 2 C 0.07 0.58 2.82 -26.73 -0.08 0.50 16 3 C -0.15 -0.96 9.56 37.16 0.36 -0.61 16 4 O -0.30 -3.39 9.55 -33.78 -0.32 -3.71 16 5 C 0.12 1.49 6.67 -38.93 -0.26 1.23 16 6 C -0.21 -2.27 8.49 -39.52 -0.34 -2.61 16 7 C -0.07 -0.86 7.37 -39.20 -0.29 -1.15 16 8 C -0.14 -2.12 5.14 -104.97 -0.54 -2.66 16 9 C 0.55 10.63 7.32 -12.44 -0.09 10.54 16 10 O -0.52 -12.50 16.51 5.28 0.09 -12.42 16 11 N -0.59 -10.82 2.49 -176.26 -0.44 -11.26 16 12 C 0.24 5.66 5.09 -5.19 -0.03 5.63 16 13 C -0.53 -13.90 9.39 -34.44 -0.32 -14.22 16 14 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 17 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.11 1.43 4.83 -4.04 -0.02 1.41 16 22 C -0.06 -0.61 4.97 -29.52 -0.15 -0.75 16 23 C 0.22 2.50 15.41 -20.76 -0.32 2.18 16 24 N -0.44 -6.12 18.54 42.15 0.78 -5.34 16 25 C -0.05 -0.78 9.56 -39.06 -0.37 -1.16 16 26 C 0.07 0.87 6.71 -39.18 -0.26 0.61 16 27 O -0.48 -5.90 13.28 -34.38 -0.46 -6.36 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.52 7.47 -51.93 -0.39 0.13 16 30 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.08 0.59 5.98 -51.93 -0.31 0.27 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.14 1.20 5.60 -52.48 -0.29 0.90 16 36 H 0.14 1.46 3.54 -52.48 -0.19 1.27 16 37 H 0.04 0.84 7.44 -51.93 -0.39 0.45 16 38 H 0.05 1.27 7.45 -51.93 -0.39 0.89 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.05 4.91 -51.93 -0.25 0.79 16 42 H 0.11 0.98 6.25 -51.93 -0.32 0.65 16 43 H 0.12 1.29 7.58 -51.93 -0.39 0.89 16 44 H 0.15 2.20 8.05 -52.49 -0.42 1.77 16 45 H 0.38 2.91 9.06 45.56 0.41 3.32 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -33.98 380.95 -6.37 -40.35 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.02 Total: 1.78 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.46 Total: -0.40 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 1.08 Total: -40.98 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.69 Total: -22.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.98 -6.37 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198292225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.735 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds