Wall clock time and date at job start Tue Mar 31 2020 16:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47125 * 2 1 4 4 O 1.42899 * 109.47108 * 239.99955 * 2 1 3 5 5 C 1.35802 * 117.00080 * 269.76184 * 4 2 1 6 6 C 1.38832 * 119.92687 * 6.00606 * 5 4 2 7 7 C 1.37792 * 120.14734 * 179.76396 * 6 5 4 8 8 C 1.39702 * 120.00349 * 0.51581 * 7 6 5 9 9 C 1.47601 * 120.06796 * 179.76306 * 8 7 6 10 10 O 1.21592 * 119.99910 * 140.49130 * 9 8 7 11 11 N 1.34775 * 120.00428 * 320.49055 * 9 8 7 12 12 C 1.46509 * 120.00214 * 177.68534 * 11 9 8 13 13 C 1.50694 * 109.47067 * 90.00054 * 12 11 9 14 14 H 1.08005 * 120.00261 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00084 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99606 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00381 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47245 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47660 * 119.99157 * 17 15 13 20 20 H 1.48500 * 109.46936 * 239.99829 * 17 15 13 21 21 C 1.46495 * 119.99995 * 357.68041 * 11 9 8 22 22 C 1.53009 * 109.47240 * 104.65991 * 21 11 9 23 23 C 1.47192 * 109.47240 * 185.53981 * 22 21 11 24 24 N 6.30591 * 101.67513 * 133.16943 * 2 1 3 25 25 C 1.39726 * 119.85814 * 359.74090 * 8 7 6 26 26 C 1.38143 * 119.85468 * 0.02562 * 25 8 7 27 27 O 1.35992 * 120.00811 * 179.97438 * 26 25 8 28 28 H 1.08997 * 109.47378 * 300.00364 * 1 2 3 29 29 H 1.08998 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47113 * 60.00200 * 1 2 3 31 31 H 1.08992 * 109.46728 * 119.99911 * 2 1 3 32 32 H 1.08997 * 109.47290 * 59.99582 * 3 2 1 33 33 H 1.08995 * 109.47082 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46962 * 299.99892 * 3 2 1 35 35 H 1.08006 * 119.92778 * 0.02640 * 6 5 4 36 36 H 1.08004 * 119.99524 * 180.23339 * 7 6 5 37 37 H 1.08997 * 109.46821 * 209.99719 * 12 11 9 38 38 H 1.08995 * 109.46885 * 329.99484 * 12 11 9 39 39 H 0.97000 * 119.99610 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47815 * 224.65926 * 21 11 9 41 41 H 1.09000 * 109.47203 * 344.66705 * 21 11 9 42 42 H 1.09003 * 109.46607 * 305.54355 * 22 21 11 43 43 H 1.08999 * 109.46381 * 65.53804 * 22 21 11 44 44 H 1.08001 * 120.07300 * 180.02562 * 25 8 7 45 45 H 0.96701 * 114.00009 * 270.02081 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2166 -2.0113 -1.0637 6 6 1.8519 -2.6825 0.0956 7 6 2.0587 -4.0406 0.2031 8 6 2.6464 -4.7434 -0.8515 9 6 2.8734 -6.1972 -0.7358 10 8 2.6833 -6.9205 -1.6946 11 7 3.2913 -6.7232 0.4326 12 6 3.4679 -8.1718 0.5624 13 6 4.8779 -8.5421 0.1810 14 1 5.5730 -7.7753 -0.1276 15 6 5.2805 -9.8601 0.2251 16 7 4.4339 -10.7940 0.6004 17 14 7.0285 -10.3191 -0.2470 18 1 7.7762 -9.0941 -0.6286 19 1 7.6988 -10.9688 0.9079 20 1 7.0003 -11.2593 -1.3961 21 6 3.5692 -5.8464 1.5728 22 6 2.4310 -5.9558 2.5896 23 6 2.6428 -4.9790 3.6701 24 7 2.8061 -4.2250 4.5040 25 6 3.0184 -4.0672 -2.0163 26 6 2.8040 -2.7064 -2.1197 27 8 3.1654 -2.0451 -3.2517 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.4012 -2.1397 0.9133 36 1 1.7706 -4.5609 1.1046 37 1 3.2804 -8.4697 1.5940 38 1 2.7668 -8.6837 -0.0967 39 1 4.7172 -11.7211 0.6317 40 1 4.5059 -6.1467 2.0424 41 1 3.6499 -4.8158 1.2274 42 1 1.4814 -5.7508 2.0953 43 1 2.4131 -6.9622 3.0079 44 1 3.4727 -4.6072 -2.8339 45 1 4.0693 -1.7019 -3.2352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198292225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:26 Heat of formation + Delta-G solvation = -74.213407 kcal Electronic energy + Delta-G solvation = -28518.354577 eV Core-core repulsion = 24501.420097 eV Total energy + Delta-G solvation = -4016.934479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89375 -40.75263 -39.03888 -38.13139 -37.36723 -36.74965 -34.84570 -34.10902 -32.33860 -31.60566 -30.77768 -28.97734 -28.14967 -25.64260 -25.39126 -24.31684 -23.67159 -21.93847 -20.67754 -19.57192 -19.07356 -18.77599 -18.32760 -17.80831 -17.44973 -16.87349 -16.68616 -16.41333 -16.02332 -15.86031 -15.58529 -15.45318 -15.22300 -14.81615 -14.51292 -14.30694 -14.27367 -13.85152 -13.68448 -13.52993 -13.48978 -13.25975 -13.19807 -13.04971 -12.99072 -12.79895 -12.70898 -12.56006 -12.43334 -12.15815 -12.00684 -11.88247 -11.67499 -11.63481 -11.52211 -10.73470 -10.57265 -9.98875 -9.55993 -9.16717 -8.17181 -6.28513 -0.10477 0.11305 1.40088 1.43245 1.53163 1.66689 1.81183 1.82615 2.07362 2.18855 2.44719 2.59764 3.03095 3.15080 3.18176 3.59927 3.71101 3.79291 3.92329 3.98065 4.03867 4.05294 4.11462 4.16080 4.42403 4.45874 4.70769 4.72953 4.78980 4.80554 4.81794 4.87745 4.94610 4.98219 5.07994 5.14205 5.25104 5.27292 5.29566 5.35051 5.49092 5.60500 5.86347 6.13768 6.26244 6.57259 6.65660 6.80354 6.81861 7.29618 7.45324 8.89845 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.003308 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.919520 B = 8462.649373 C = 9720.493832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 C -0.147 4.147 4 O -0.310 6.310 5 C 0.129 3.871 6 C -0.195 4.195 7 C -0.059 4.059 8 C -0.156 4.156 9 C 0.550 3.450 10 O -0.584 6.584 11 N -0.587 5.587 12 C 0.258 3.742 13 C -0.540 4.540 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.923 5.923 17 Si 0.956 3.044 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.286 1.286 21 C 0.102 3.898 22 C -0.047 4.047 23 C 0.243 3.757 24 N -0.474 5.474 25 C -0.066 4.066 26 C 0.062 3.938 27 O -0.495 6.495 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.047 0.953 38 H 0.006 0.994 39 H 0.266 0.734 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 23.117 3.284 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.005 3.995 3 C -0.204 4.204 4 O -0.223 6.223 5 C 0.082 3.918 6 C -0.213 4.213 7 C -0.077 4.077 8 C -0.160 4.160 9 C 0.339 3.661 10 O -0.465 6.465 11 N -0.316 5.316 12 C 0.138 3.862 13 C -0.579 4.579 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.563 5.563 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.212 1.212 21 C -0.022 4.022 22 C -0.088 4.088 23 C -0.075 4.075 24 N -0.152 5.152 25 C -0.086 4.086 26 C 0.017 3.983 27 O -0.306 6.306 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.184 0.816 36 H 0.178 0.822 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.459 23.677 3.742 24.826 hybrid contribution 1.308 -1.225 -0.665 1.911 sum -5.151 22.452 3.078 23.240 Atomic orbital electron populations 1.22352 0.93963 1.03107 1.04009 1.22888 0.95329 0.94424 0.86827 1.21905 1.01976 0.92566 1.04000 1.86180 1.80243 1.16691 1.39206 1.19659 0.94877 0.83942 0.93348 1.21354 1.06629 0.94862 0.98462 1.21718 0.94489 0.93830 0.97658 1.19607 1.07292 0.92365 0.96709 1.18659 0.76889 0.87935 0.82619 1.90760 1.53981 1.63022 1.38760 1.47974 1.63958 1.08791 1.10889 1.18916 0.95211 0.74970 0.97150 1.21749 0.97910 0.93002 1.45203 0.93047 1.25675 1.01405 0.96347 0.95153 1.70016 1.36463 1.01274 1.48593 0.85534 0.80154 0.78150 0.77975 1.19419 1.19707 1.21177 1.21810 0.98224 0.95950 0.86209 1.19924 1.01847 0.96955 0.90044 1.28907 0.92125 0.92996 0.93475 1.81250 1.09724 1.12198 1.11988 1.21238 0.97685 0.93049 0.96582 1.17497 1.04306 0.89335 0.87208 1.84858 1.37280 1.73882 1.34612 0.88720 0.92382 0.91945 0.89446 0.88348 0.91924 0.91755 0.81579 0.82248 0.93508 0.97549 0.92527 0.89421 0.87623 0.84616 0.85166 0.85368 0.73814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.32 71.98 0.67 -1.33 16 2 C 0.06 0.79 2.82 30.60 0.09 0.88 16 3 C -0.15 -1.45 9.56 71.98 0.69 -0.76 16 4 O -0.31 -6.24 9.55 -77.31 -0.74 -6.98 16 5 C 0.13 2.86 6.67 22.69 0.15 3.01 16 6 C -0.19 -3.66 8.49 22.31 0.19 -3.47 16 7 C -0.06 -1.29 7.37 22.52 0.17 -1.12 16 8 C -0.16 -4.72 5.14 -20.09 -0.10 -4.82 16 9 C 0.55 21.80 7.32 86.71 0.63 22.44 16 10 O -0.58 -29.57 16.51 -4.00 -0.07 -29.64 16 11 N -0.59 -21.75 2.49 -829.83 -2.07 -23.82 16 12 C 0.26 12.30 5.09 85.63 0.44 12.74 16 13 C -0.54 -29.05 9.39 25.60 0.24 -28.81 16 14 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 15 C 0.01 0.74 5.46 84.65 0.46 1.20 16 16 N -0.92 -52.79 13.29 21.45 0.28 -52.51 16 17 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 21 C 0.10 2.61 4.83 86.38 0.42 3.03 16 22 C -0.05 -0.87 4.97 28.79 0.14 -0.73 16 23 C 0.24 4.91 15.41 89.44 1.38 6.29 16 24 N -0.47 -11.91 18.54 20.00 0.37 -11.54 16 25 C -0.07 -1.97 9.56 22.61 0.22 -1.76 16 26 C 0.06 1.60 6.71 22.53 0.15 1.75 16 27 O -0.49 -11.74 13.28 -79.44 -1.05 -12.80 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.74 7.47 -2.39 -0.02 0.73 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.09 0.96 5.98 -2.39 -0.01 0.95 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.68 8.14 -2.38 -0.02 0.67 16 35 H 0.17 2.13 5.60 -2.91 -0.02 2.12 16 36 H 0.16 2.77 3.54 -2.91 -0.01 2.76 16 37 H 0.05 2.13 7.44 -2.39 -0.02 2.11 16 38 H 0.01 0.36 7.45 -2.39 -0.02 0.34 16 39 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.11 2.32 4.91 -2.39 -0.01 2.31 16 42 H 0.14 1.92 6.25 -2.39 -0.01 1.91 16 43 H 0.13 2.39 7.58 -2.39 -0.02 2.38 16 44 H 0.13 4.17 8.05 -2.91 -0.02 4.14 16 45 H 0.40 5.76 9.06 -74.06 -0.67 5.09 16 Total: -1.00 -76.25 380.95 5.06 -71.19 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.38 Total: 12.06 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 5.93 Total: 8.53 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -1.41 Total: -87.87 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -1.86 Total: -49.41 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -76.25 5.06 -71.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198292225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.026 kcal (2) G-P(sol) polarization free energy of solvation -76.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds