Wall clock time and date at job start Tue Mar 31 2020 18:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47226 * 2 1 4 4 O 1.42908 * 109.46914 * 119.99953 * 2 1 3 5 5 C 1.53004 * 109.47152 * 239.99546 * 2 1 3 6 6 H 1.08994 * 112.97776 * 311.50369 * 5 2 1 7 7 C 1.51510 * 113.68559 * 82.99839 * 5 2 1 8 8 O 1.21281 * 134.17895 * 294.45882 * 7 5 2 9 9 N 1.35840 * 91.65190 * 114.42592 * 7 5 2 10 10 C 1.47388 * 95.23754 * 359.97438 * 9 7 5 11 11 H 1.08994 * 113.71012 * 245.59907 * 10 9 7 12 12 C 1.53006 * 113.79719 * 114.40941 * 10 9 7 13 13 H 1.08992 * 109.47335 * 321.24155 * 12 10 9 14 14 C 1.53001 * 109.47071 * 201.23800 * 12 10 9 15 15 C 1.50700 * 109.46956 * 81.24402 * 12 10 9 16 16 O 1.21288 * 119.99817 * 359.97438 * 15 12 10 17 17 N 1.34774 * 120.00155 * 180.02562 * 15 12 10 18 18 C 1.39937 * 119.99848 * 174.89814 * 17 15 12 19 19 C 1.39293 * 119.94964 * 325.51411 * 18 17 15 20 20 C 1.38488 * 120.42746 * 179.76597 * 19 18 17 21 21 C 1.37674 * 120.32299 * 0.51733 * 20 19 18 22 22 C 1.40742 * 119.88860 * 359.74593 * 21 20 19 23 23 C 1.41400 * 120.21471 * 180.02562 * 22 21 20 24 24 H 1.08000 * 120.00448 * 205.16616 * 23 22 21 25 25 C 1.39934 * 120.00043 * 25.15742 * 23 22 21 26 26 N 1.30825 * 119.99851 * 16.81607 * 25 23 22 27 27 Si 1.86801 * 120.00216 * 196.80979 * 25 23 22 28 28 H 1.48501 * 109.47098 * 0.02562 * 27 25 23 29 29 H 1.48509 * 109.46909 * 120.00352 * 27 25 23 30 30 H 1.48497 * 109.47434 * 240.00211 * 27 25 23 31 31 C 1.38241 * 119.94662 * 145.79739 * 18 17 15 32 32 H 1.09004 * 109.47199 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47274 * 299.99839 * 1 2 3 34 34 H 1.09003 * 109.47003 * 60.00140 * 1 2 3 35 35 H 0.96698 * 113.99982 * 59.99992 * 4 2 1 36 36 H 0.96994 * 132.38058 * 180.02562 * 9 7 5 37 37 H 1.09004 * 109.47496 * 300.00735 * 14 12 10 38 38 H 1.09007 * 109.46802 * 60.00506 * 14 12 10 39 39 H 1.09001 * 109.47314 * 180.02562 * 14 12 10 40 40 H 0.96999 * 119.99855 * 354.89511 * 17 15 12 41 41 H 1.08001 * 119.78335 * 0.02831 * 19 18 17 42 42 H 1.08004 * 119.83129 * 180.23638 * 20 19 18 43 43 H 1.08000 * 120.05830 * 179.76076 * 21 20 19 44 44 H 0.97002 * 120.00342 * 179.97438 * 26 25 23 45 45 H 1.08006 * 120.16261 * 359.95549 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.0400 -0.7214 -1.2492 6 1 1.5549 -1.6836 -1.4128 7 6 2.0834 0.1561 -2.4836 8 8 1.2402 0.7079 -3.1585 9 7 3.4388 0.0821 -2.5366 10 6 3.5732 -0.7774 -1.3468 11 1 4.0837 -0.2951 -0.5132 12 6 4.1190 -2.1737 -1.6524 13 1 3.6949 -2.5324 -2.5901 14 6 3.7362 -3.1298 -0.5208 15 6 5.6200 -2.1115 -1.7711 16 8 6.1964 -1.0543 -1.6261 17 7 6.3217 -3.2304 -2.0394 18 6 7.7023 -3.1555 -2.2553 19 6 8.2474 -2.0423 -2.8908 20 6 9.6128 -1.9557 -3.1052 21 6 10.4458 -2.9748 -2.7016 22 6 9.9089 -4.1083 -2.0631 23 6 10.7581 -5.1588 -1.6453 24 1 10.3671 -6.1600 -1.5400 25 6 12.1054 -4.9012 -1.3682 26 7 12.5096 -3.6725 -1.1723 27 14 13.3267 -6.3118 -1.2780 28 1 12.6224 -7.5935 -1.5357 29 1 14.3861 -6.1153 -2.3000 30 1 13.9425 -6.3477 0.0727 31 6 8.5224 -4.1891 -1.8428 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.7209 -1.5952 1.2330 36 1 4.0911 0.4629 -3.1451 37 1 4.1602 -2.7710 0.4171 38 1 2.6504 -3.1748 -0.4349 39 1 4.1253 -4.1245 -0.7382 40 1 5.8698 -4.0876 -2.0828 41 1 7.6014 -1.2396 -3.2147 42 1 10.0256 -1.0864 -3.5956 43 1 11.5096 -2.9045 -2.8745 44 1 13.4434 -3.4939 -0.9799 45 1 8.1003 -5.0545 -1.3534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218987166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:44 Heat of formation + Delta-G solvation = -85.588032 kcal Electronic energy + Delta-G solvation = -28106.569477 eV Core-core repulsion = 24089.141757 eV Total energy + Delta-G solvation = -4017.427720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.52196 -39.73094 -37.67932 -37.38269 -36.52557 -34.52364 -33.62163 -32.75812 -31.66916 -29.88427 -28.37411 -27.74061 -25.78298 -25.28557 -23.23230 -22.92078 -21.15176 -20.83760 -19.85733 -19.56247 -17.82229 -17.77231 -17.12898 -16.71686 -16.52806 -15.82263 -15.56823 -15.27161 -15.09543 -14.76792 -14.60489 -14.08708 -13.91219 -13.55946 -13.37397 -13.12576 -12.98525 -12.89739 -12.58601 -12.36670 -12.29605 -12.15899 -11.80018 -11.65335 -11.55161 -11.24200 -11.22567 -11.18549 -10.96170 -10.61950 -10.51124 -10.22921 -10.10053 -9.67658 -9.49863 -9.40520 -9.23596 -8.97405 -7.51868 -6.99407 -6.76769 -4.40741 2.19785 2.47629 2.76443 2.98331 3.05319 3.10051 3.11039 3.24790 3.41687 3.50496 3.90510 4.03010 4.24138 4.26881 4.50454 4.57964 4.61599 4.72708 4.86126 4.88438 5.05418 5.08586 5.35436 5.37895 5.49872 5.62225 5.64337 5.73350 5.79344 5.87262 6.11754 6.23966 6.46993 6.67161 6.68912 6.87036 6.95275 6.99823 7.20764 7.22735 7.53925 7.60197 7.90828 7.98653 8.07788 8.09371 8.25354 8.50060 8.63053 8.84942 8.92049 10.16724 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026175 B = 0.002317 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.468203 B =12082.135935 C =12603.008017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.127 3.873 3 H 0.104 0.896 4 O -0.551 6.551 5 C -0.185 4.185 6 H 0.123 0.877 7 C 0.536 3.464 8 O -0.508 6.508 9 N -0.732 5.732 10 C 0.168 3.832 11 H 0.117 0.883 12 C -0.117 4.117 13 H 0.102 0.898 14 C -0.143 4.143 15 C 0.511 3.489 16 O -0.519 6.519 17 N -0.664 5.664 18 C 0.152 3.848 19 C -0.226 4.226 20 C -0.095 4.095 21 C -0.167 4.167 22 C 0.122 3.878 23 C -0.464 4.464 24 H 0.078 0.922 25 C 0.076 3.924 26 N -0.793 5.793 27 Si 0.908 3.092 28 H -0.261 1.261 29 H -0.272 1.272 30 H -0.275 1.275 31 C -0.244 4.244 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.376 0.624 36 H 0.408 0.592 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.399 0.601 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.280 0.720 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.879 0.538 2.181 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.067 3.933 3 H 0.122 0.878 4 O -0.356 6.356 5 C -0.207 4.207 6 H 0.140 0.860 7 C 0.320 3.680 8 O -0.381 6.381 9 N -0.391 5.391 10 C 0.063 3.937 11 H 0.135 0.865 12 C -0.140 4.140 13 H 0.120 0.880 14 C -0.201 4.201 15 C 0.297 3.703 16 O -0.394 6.394 17 N -0.307 5.307 18 C 0.060 3.940 19 C -0.248 4.248 20 C -0.114 4.114 21 C -0.187 4.187 22 C 0.119 3.881 23 C -0.493 4.493 24 H 0.096 0.904 25 C -0.142 4.142 26 N -0.418 5.418 27 Si 0.732 3.268 28 H -0.184 1.184 29 H -0.197 1.197 30 H -0.200 1.200 31 C -0.265 4.265 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.223 0.777 36 H 0.250 0.750 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.234 0.766 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.137 0.863 44 H 0.091 0.909 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.464 2.355 2.071 18.729 hybrid contribution 0.616 -1.418 -0.458 1.613 sum -17.849 0.937 1.613 17.946 Atomic orbital electron populations 1.22512 0.95321 1.03006 1.03577 1.21539 0.93459 0.96268 0.82017 0.87826 1.86682 1.77065 1.29219 1.42600 1.24509 0.97183 1.02010 0.96977 0.85967 1.21739 0.82287 0.79623 0.84358 1.90764 1.47210 1.48121 1.52008 1.48745 1.07671 1.51680 1.30957 1.22169 0.93720 0.89562 0.88260 0.86484 1.21592 0.93681 0.96540 1.02140 0.87969 1.21772 1.02051 0.98427 0.97878 1.20328 0.88710 0.84396 0.76907 1.90743 1.71161 1.29245 1.48294 1.43470 1.07973 1.09691 1.69597 1.17415 0.80282 0.97138 0.99125 1.20254 0.95070 0.99345 1.10087 1.20581 0.93037 0.97763 1.00050 1.21379 0.99561 0.95396 1.02333 1.17382 0.90254 0.92403 0.88086 1.19540 0.93289 0.95994 1.40523 0.90429 1.25902 0.99358 0.96501 0.92455 1.69835 1.17800 1.20729 1.33460 0.86272 0.80092 0.81873 0.78527 1.18439 1.19716 1.20011 1.20700 0.94140 1.00133 1.11550 0.91963 0.91266 0.90748 0.77703 0.75045 0.90800 0.91372 0.91247 0.76647 0.88358 0.89086 0.86307 0.90891 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.15 9.53 37.16 0.35 -0.80 16 2 C 0.13 0.93 3.30 -26.73 -0.09 0.84 16 3 H 0.10 0.89 8.06 -51.93 -0.42 0.47 16 4 O -0.55 -4.00 13.11 -35.23 -0.46 -4.46 16 5 C -0.18 -1.42 2.67 -91.03 -0.24 -1.66 16 6 H 0.12 0.66 7.13 -51.93 -0.37 0.29 16 7 C 0.54 6.04 9.30 -10.27 -0.10 5.94 16 8 O -0.51 -7.42 18.03 5.56 0.10 -7.32 16 9 N -0.73 -8.06 7.24 -57.74 -0.42 -8.47 16 10 C 0.17 1.65 2.82 -67.22 -0.19 1.46 16 11 H 0.12 1.35 7.75 -51.93 -0.40 0.95 16 12 C -0.12 -1.12 2.66 -91.77 -0.24 -1.37 16 13 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 14 C -0.14 -0.97 8.90 37.16 0.33 -0.64 16 15 C 0.51 7.74 6.88 -10.99 -0.08 7.67 16 16 O -0.52 -10.01 13.64 5.55 0.08 -9.93 16 17 N -0.66 -10.72 5.26 -9.91 -0.05 -10.77 16 18 C 0.15 3.27 6.25 -83.76 -0.52 2.75 16 19 C -0.23 -5.22 8.66 -39.10 -0.34 -5.56 16 20 C -0.10 -2.28 10.01 -39.70 -0.40 -2.68 16 21 C -0.17 -4.32 8.69 -38.84 -0.34 -4.66 16 22 C 0.12 3.17 5.57 -106.85 -0.59 2.57 16 23 C -0.46 -11.97 9.05 -37.74 -0.34 -12.31 16 24 H 0.08 1.91 7.90 -52.49 -0.41 1.50 16 25 C 0.08 1.87 5.16 -17.35 -0.09 1.78 16 26 N -0.79 -20.35 10.94 55.55 0.61 -19.74 16 27 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 28 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 29 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 30 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 31 C -0.24 -5.68 9.70 -38.68 -0.38 -6.06 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.38 1.31 9.05 45.56 0.41 1.72 16 36 H 0.41 4.65 8.96 -40.82 -0.37 4.28 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.26 6.95 -51.93 -0.36 -0.10 16 39 H 0.07 0.44 7.46 -51.93 -0.39 0.05 16 40 H 0.40 4.98 8.10 -40.82 -0.33 4.65 16 41 H 0.10 2.22 6.48 -52.49 -0.34 1.88 16 42 H 0.09 1.97 8.06 -52.48 -0.42 1.55 16 43 H 0.12 3.16 6.17 -52.49 -0.32 2.84 16 44 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 45 H 0.09 2.03 8.06 -52.48 -0.42 1.60 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -32.73 377.40 -8.14 -40.87 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -5.40 Total: 13.63 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -3.25 Total: -12.72 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.14 Total: -38.99 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.29 Total: -21.71 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.73 -8.14 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218987166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.718 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds