Wall clock time and date at job start Tue Mar 31 2020 18:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47226 * 2 1 4 4 O 1.42908 * 109.46914 * 119.99953 * 2 1 3 5 5 C 1.53004 * 109.47152 * 239.99546 * 2 1 3 6 6 H 1.08994 * 112.97776 * 311.50369 * 5 2 1 7 7 C 1.51510 * 113.68559 * 82.99839 * 5 2 1 8 8 O 1.21281 * 134.17895 * 294.45882 * 7 5 2 9 9 N 1.35840 * 91.65190 * 114.42592 * 7 5 2 10 10 C 1.47388 * 95.23754 * 359.97438 * 9 7 5 11 11 H 1.08994 * 113.71012 * 245.59907 * 10 9 7 12 12 C 1.53006 * 113.79719 * 114.40941 * 10 9 7 13 13 H 1.08992 * 109.47335 * 321.24155 * 12 10 9 14 14 C 1.53001 * 109.47071 * 201.23800 * 12 10 9 15 15 C 1.50700 * 109.46956 * 81.24402 * 12 10 9 16 16 O 1.21288 * 119.99817 * 359.97438 * 15 12 10 17 17 N 1.34774 * 120.00155 * 180.02562 * 15 12 10 18 18 C 1.39937 * 119.99848 * 174.89814 * 17 15 12 19 19 C 1.39293 * 119.94964 * 325.51411 * 18 17 15 20 20 C 1.38488 * 120.42746 * 179.76597 * 19 18 17 21 21 C 1.37674 * 120.32299 * 0.51733 * 20 19 18 22 22 C 1.40742 * 119.88860 * 359.74593 * 21 20 19 23 23 C 1.41400 * 120.21471 * 180.02562 * 22 21 20 24 24 H 1.08000 * 120.00448 * 205.16616 * 23 22 21 25 25 C 1.39934 * 120.00043 * 25.15742 * 23 22 21 26 26 N 1.30825 * 119.99851 * 16.81607 * 25 23 22 27 27 Si 1.86801 * 120.00216 * 196.80979 * 25 23 22 28 28 H 1.48501 * 109.47098 * 0.02562 * 27 25 23 29 29 H 1.48509 * 109.46909 * 120.00352 * 27 25 23 30 30 H 1.48497 * 109.47434 * 240.00211 * 27 25 23 31 31 C 1.38241 * 119.94662 * 145.79739 * 18 17 15 32 32 H 1.09004 * 109.47199 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47274 * 299.99839 * 1 2 3 34 34 H 1.09003 * 109.47003 * 60.00140 * 1 2 3 35 35 H 0.96698 * 113.99982 * 59.99992 * 4 2 1 36 36 H 0.96994 * 132.38058 * 180.02562 * 9 7 5 37 37 H 1.09004 * 109.47496 * 300.00735 * 14 12 10 38 38 H 1.09007 * 109.46802 * 60.00506 * 14 12 10 39 39 H 1.09001 * 109.47314 * 180.02562 * 14 12 10 40 40 H 0.96999 * 119.99855 * 354.89511 * 17 15 12 41 41 H 1.08001 * 119.78335 * 0.02831 * 19 18 17 42 42 H 1.08004 * 119.83129 * 180.23638 * 20 19 18 43 43 H 1.08000 * 120.05830 * 179.76076 * 21 20 19 44 44 H 0.97002 * 120.00342 * 179.97438 * 26 25 23 45 45 H 1.08006 * 120.16261 * 359.95549 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.0400 -0.7214 -1.2492 6 1 1.5549 -1.6836 -1.4128 7 6 2.0834 0.1561 -2.4836 8 8 1.2402 0.7079 -3.1585 9 7 3.4388 0.0821 -2.5366 10 6 3.5732 -0.7774 -1.3468 11 1 4.0837 -0.2951 -0.5132 12 6 4.1190 -2.1737 -1.6524 13 1 3.6949 -2.5324 -2.5901 14 6 3.7362 -3.1298 -0.5208 15 6 5.6200 -2.1115 -1.7711 16 8 6.1964 -1.0543 -1.6261 17 7 6.3217 -3.2304 -2.0394 18 6 7.7023 -3.1555 -2.2553 19 6 8.2474 -2.0423 -2.8908 20 6 9.6128 -1.9557 -3.1052 21 6 10.4458 -2.9748 -2.7016 22 6 9.9089 -4.1083 -2.0631 23 6 10.7581 -5.1588 -1.6453 24 1 10.3671 -6.1600 -1.5400 25 6 12.1054 -4.9012 -1.3682 26 7 12.5096 -3.6725 -1.1723 27 14 13.3267 -6.3118 -1.2780 28 1 12.6224 -7.5935 -1.5357 29 1 14.3861 -6.1153 -2.3000 30 1 13.9425 -6.3477 0.0727 31 6 8.5224 -4.1891 -1.8428 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.7209 -1.5952 1.2330 36 1 4.0911 0.4629 -3.1451 37 1 4.1602 -2.7710 0.4171 38 1 2.6504 -3.1748 -0.4349 39 1 4.1253 -4.1245 -0.7382 40 1 5.8698 -4.0876 -2.0828 41 1 7.6014 -1.2396 -3.2147 42 1 10.0256 -1.0864 -3.5956 43 1 11.5096 -2.9045 -2.8745 44 1 13.4434 -3.4939 -0.9799 45 1 8.1003 -5.0545 -1.3534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218987166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:43 Heat of formation + Delta-G solvation = -111.492963 kcal Electronic energy + Delta-G solvation = -28107.692799 eV Core-core repulsion = 24089.141757 eV Total energy + Delta-G solvation = -4018.551042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.39033 -41.05427 -39.07567 -38.37912 -37.42754 -36.13431 -35.03957 -33.95568 -32.24446 -31.77502 -29.94931 -28.51659 -27.19029 -26.48552 -24.43506 -23.53832 -22.88438 -22.36807 -20.89790 -20.56544 -19.44411 -18.72928 -18.19550 -17.60120 -17.40127 -17.38683 -16.80996 -16.54049 -16.32771 -16.01898 -15.77665 -15.40250 -14.96116 -14.66618 -14.59839 -14.18304 -14.10559 -14.06935 -13.67105 -13.54944 -13.25591 -13.03345 -12.90032 -12.83351 -12.79158 -12.73474 -12.43507 -12.22778 -12.21573 -11.91761 -11.79519 -11.46399 -11.30451 -11.11289 -10.95694 -10.85913 -10.57128 -10.30012 -9.42275 -8.76831 -8.60079 -6.35822 0.86518 0.96572 1.32849 1.40401 1.49634 1.55782 1.79512 2.08552 2.21274 2.28099 2.74211 2.75880 3.27783 3.45235 3.70345 3.72105 3.75742 3.95254 4.02424 4.19316 4.22908 4.33393 4.42966 4.52726 4.65085 4.81929 4.90385 4.94598 5.01388 5.04108 5.04409 5.12980 5.15840 5.22086 5.26070 5.32341 5.34196 5.39985 5.74533 5.78793 5.83943 6.08489 6.11229 6.28963 6.62087 6.72383 6.92520 6.92867 6.99003 7.19681 7.30661 8.34634 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026175 B = 0.002317 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.468203 B =12082.135935 C =12603.008017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.131 3.869 3 H 0.082 0.918 4 O -0.562 6.562 5 C -0.155 4.155 6 H 0.161 0.839 7 C 0.529 3.471 8 O -0.546 6.546 9 N -0.739 5.739 10 C 0.165 3.835 11 H 0.098 0.902 12 C -0.100 4.100 13 H 0.127 0.873 14 C -0.144 4.144 15 C 0.507 3.493 16 O -0.563 6.563 17 N -0.657 5.657 18 C 0.165 3.835 19 C -0.238 4.238 20 C -0.100 4.100 21 C -0.197 4.197 22 C 0.093 3.907 23 C -0.494 4.494 24 H 0.082 0.918 25 C 0.032 3.968 26 N -0.828 5.828 27 Si 0.984 3.016 28 H -0.253 1.253 29 H -0.267 1.267 30 H -0.268 1.268 31 C -0.253 4.253 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.394 0.606 36 H 0.401 0.599 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.420 0.580 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.287 0.713 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.037 -1.747 3.073 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.071 3.929 3 H 0.100 0.900 4 O -0.370 6.370 5 C -0.177 4.177 6 H 0.178 0.822 7 C 0.315 3.685 8 O -0.423 6.423 9 N -0.396 5.396 10 C 0.060 3.940 11 H 0.116 0.884 12 C -0.122 4.122 13 H 0.144 0.856 14 C -0.202 4.202 15 C 0.296 3.704 16 O -0.441 6.441 17 N -0.302 5.302 18 C 0.072 3.928 19 C -0.259 4.259 20 C -0.119 4.119 21 C -0.217 4.217 22 C 0.091 3.909 23 C -0.523 4.523 24 H 0.101 0.899 25 C -0.182 4.182 26 N -0.454 5.454 27 Si 0.805 3.195 28 H -0.177 1.177 29 H -0.192 1.192 30 H -0.193 1.193 31 C -0.274 4.274 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.245 0.755 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.258 0.742 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -20.665 0.032 2.981 20.879 hybrid contribution 1.226 -0.601 -0.715 1.541 sum -19.439 -0.568 2.266 19.579 Atomic orbital electron populations 1.22459 0.94081 1.04437 1.02887 1.21401 0.94214 0.95384 0.81886 0.89961 1.86674 1.77324 1.30845 1.42110 1.24451 0.95404 1.02725 0.95080 0.82165 1.22320 0.81807 0.79440 0.84942 1.90739 1.48167 1.49765 1.53600 1.49004 1.07794 1.51741 1.31068 1.22191 0.95251 0.89341 0.87168 0.88395 1.21606 0.88750 0.97189 1.04696 0.85562 1.21887 1.04815 0.97689 0.95778 1.21403 0.91010 0.83050 0.74941 1.90732 1.72659 1.30852 1.49878 1.43421 1.05844 1.11454 1.69502 1.17420 0.82890 0.95639 0.96856 1.20407 0.94765 1.00140 1.10634 1.20793 0.93602 0.97780 0.99739 1.21300 0.99012 0.96748 1.04638 1.17774 0.91852 0.92764 0.88550 1.19837 0.94512 0.96214 1.41756 0.89946 1.26819 1.00856 0.99144 0.91420 1.69907 1.18628 1.22878 1.33984 0.85126 0.77293 0.78372 0.78710 1.17671 1.19198 1.19267 1.20895 0.93507 1.01297 1.11738 0.89482 0.91161 0.92246 0.75518 0.75857 0.91876 0.87256 0.90226 0.74211 0.88053 0.87747 0.88055 0.90224 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.53 71.98 0.69 -1.07 16 2 C 0.13 1.62 3.30 30.60 0.10 1.73 16 3 H 0.08 1.37 8.06 -2.39 -0.02 1.35 16 4 O -0.56 -6.45 13.11 -148.98 -1.95 -8.41 16 5 C -0.15 -1.92 2.67 -11.02 -0.03 -1.95 16 6 H 0.16 0.81 7.13 -2.39 -0.02 0.79 16 7 C 0.53 11.31 9.30 87.64 0.82 12.13 16 8 O -0.55 -15.79 18.03 -3.03 -0.05 -15.85 16 9 N -0.74 -15.77 7.24 -454.36 -3.29 -19.06 16 10 C 0.17 2.92 2.82 44.96 0.13 3.05 16 11 H 0.10 2.18 7.75 -2.39 -0.02 2.16 16 12 C -0.10 -1.60 2.66 -11.54 -0.03 -1.63 16 13 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 14 C -0.14 -1.30 8.90 71.98 0.64 -0.65 16 15 C 0.51 14.57 6.88 87.66 0.60 15.17 16 16 O -0.56 -21.65 13.64 -3.05 -0.04 -21.69 16 17 N -0.66 -20.00 5.26 -303.65 -1.60 -21.60 16 18 C 0.17 7.06 6.25 38.10 0.24 7.30 16 19 C -0.24 -11.12 8.66 22.58 0.20 -10.92 16 20 C -0.10 -4.95 10.01 22.20 0.22 -4.73 16 21 C -0.20 -10.61 8.69 22.75 0.20 -10.42 16 22 C 0.09 4.99 5.57 -21.31 -0.12 4.87 16 23 C -0.49 -25.92 9.05 23.46 0.21 -25.71 16 24 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 25 C 0.03 1.61 5.16 85.25 0.44 2.05 16 26 N -0.83 -43.65 10.94 21.82 0.24 -43.41 16 27 Si 0.98 37.45 29.59 68.60 2.03 39.48 16 28 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16 29 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 30 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 31 C -0.25 -11.79 9.70 22.85 0.22 -11.56 16 32 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.39 0.96 9.05 -74.06 -0.67 0.29 16 36 H 0.40 9.28 8.96 -92.71 -0.83 8.45 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.11 0.13 6.95 -2.38 -0.02 0.12 16 39 H 0.08 0.62 7.46 -2.39 -0.02 0.60 16 40 H 0.42 9.23 8.10 -92.71 -0.75 8.48 16 41 H 0.10 4.63 6.48 -2.91 -0.02 4.61 16 42 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.10 5.70 6.17 -2.91 -0.02 5.68 16 44 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 45 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -75.42 377.40 -1.34 -76.76 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -1.19 Total: 36.13 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 4.52 Total: -22.35 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -4.65 Total: -84.07 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -2.05 Total: -45.95 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -75.42 -1.34 -76.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218987166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.734 kcal (2) G-P(sol) polarization free energy of solvation -75.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds