Wall clock time and date at job start Tue Mar 31 2020 16:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 119.99998 * 2 1 4 4 O 1.42903 * 109.46790 * 135.00264 * 3 2 1 5 5 C 1.42907 * 113.99815 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.63986 * 26.85705 * 5 4 3 7 7 C 1.55154 * 110.72033 * 149.99641 * 5 4 3 8 8 C 1.54906 * 101.58213 * 153.86468 * 7 5 4 9 9 N 1.47431 * 104.83129 * 322.99340 * 8 7 5 10 10 C 1.34777 * 125.64625 * 203.86071 * 9 8 7 11 11 O 1.21591 * 120.00157 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99856 * 0.02562 * 10 9 8 13 13 C 1.40027 * 119.99721 * 175.48757 * 12 10 9 14 14 C 1.38906 * 119.99884 * 214.85556 * 13 12 10 15 15 C 1.38012 * 120.00101 * 179.74284 * 14 13 12 16 16 C 1.38911 * 119.99817 * 0.55393 * 15 14 13 17 17 O 1.35776 * 119.99753 * 179.72389 * 16 15 14 18 18 C 1.34817 * 116.99845 * 185.32256 * 17 16 15 19 19 H 1.07999 * 120.00014 * 354.96775 * 18 17 16 20 20 C 1.38630 * 120.00283 * 174.95936 * 18 17 16 21 21 N 1.31568 * 120.00499 * 180.02562 * 20 18 17 22 22 Si 1.86808 * 119.99601 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.46889 * 89.99744 * 22 20 18 24 24 H 1.48502 * 109.46720 * 209.99548 * 22 20 18 25 25 H 1.48497 * 109.47179 * 329.99677 * 22 20 18 26 26 C 1.38902 * 119.99802 * 359.69530 * 16 15 14 27 27 C 1.38011 * 120.00357 * 0.02638 * 26 16 15 28 28 C 1.47011 * 108.70318 * 24.12655 * 9 8 7 29 29 H 1.08005 * 120.00336 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99842 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.99842 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47446 * 15.00347 * 3 2 1 33 33 H 1.09005 * 109.46924 * 254.99532 * 3 2 1 34 34 H 1.09002 * 111.00418 * 35.79208 * 7 5 4 35 35 H 1.08996 * 111.00554 * 271.94220 * 7 5 4 36 36 H 1.08998 * 110.36971 * 204.15145 * 8 7 5 37 37 H 1.09005 * 110.36712 * 81.82723 * 8 7 5 38 38 H 0.96993 * 120.00081 * 355.47982 * 12 10 9 39 39 H 1.08005 * 120.00125 * 0.02562 * 14 13 12 40 40 H 1.07999 * 120.00471 * 180.27304 * 15 14 13 41 41 H 0.96993 * 120.00437 * 180.02562 * 21 20 18 42 42 H 1.08004 * 119.99828 * 180.02562 * 26 16 15 43 43 H 1.08004 * 119.99725 * 180.02562 * 27 26 16 44 44 H 1.09002 * 109.88330 * 118.35749 * 28 9 8 45 45 H 1.08998 * 109.88401 * 239.52253 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9085 2.4348 1.0321 6 1 3.3170 3.3017 0.7377 7 6 4.4819 2.6213 2.4616 8 6 5.7485 3.4678 2.1806 9 7 6.2783 2.9434 0.9087 10 6 7.5581 3.0312 0.4952 11 8 7.8839 2.5611 -0.5778 12 7 8.4767 3.6400 1.2711 13 6 9.8231 3.6486 0.8864 14 6 10.8211 3.5761 1.8498 15 6 12.1481 3.5793 1.4704 16 6 12.4857 3.6664 0.1258 17 8 13.7912 3.6752 -0.2471 18 6 14.0529 3.8725 -1.5548 19 1 13.2413 3.9333 -2.2647 20 6 15.3638 3.9975 -1.9883 21 7 15.6192 4.1906 -3.2644 22 14 16.7676 3.8918 -0.7604 23 1 17.2067 2.4792 -0.6310 24 1 17.9038 4.7219 -1.2349 25 1 16.3082 4.3903 0.5608 26 6 11.4878 3.7441 -0.8372 27 6 10.1607 3.7352 -0.4582 28 6 5.1782 2.3146 0.1632 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3855 2.1160 0.2660 33 1 2.4755 1.4867 -0.9927 34 1 4.7444 1.6610 2.9057 35 1 3.7815 3.1647 3.0957 36 1 6.4784 3.3350 2.9792 37 1 5.4858 4.5206 2.0768 38 1 8.2052 4.0722 2.0959 39 1 10.5587 3.5128 2.8956 40 1 12.9240 3.5185 2.2191 41 1 16.5363 4.2777 -3.5677 42 1 11.7503 3.8115 -1.8827 43 1 9.3849 3.7952 -1.2071 44 1 5.0292 2.8321 -0.7845 45 1 5.4057 1.2641 -0.0175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254599813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:07 Heat of formation + Delta-G solvation = -31.821242 kcal Electronic energy + Delta-G solvation = -27053.178764 eV Core-core repulsion = 23038.082547 eV Total energy + Delta-G solvation = -4015.096217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.68443 -39.39786 -38.68404 -37.20281 -36.32271 -34.28291 -33.92833 -32.29299 -31.18713 -30.23007 -29.20502 -27.85673 -26.41789 -25.12075 -23.79483 -22.39276 -21.81992 -21.11899 -20.36582 -19.82142 -18.64256 -17.73624 -17.69917 -17.32656 -16.64607 -16.35883 -15.70026 -15.55440 -15.08186 -14.70880 -14.46833 -13.98880 -13.98027 -13.79535 -13.74497 -13.56672 -13.27275 -13.13013 -12.73717 -12.62594 -12.37766 -12.32494 -12.22332 -12.08341 -11.68019 -11.59209 -11.43048 -11.17282 -10.92912 -10.70836 -10.40434 -10.25391 -9.94210 -9.76452 -9.66628 -9.21629 -8.87866 -8.70401 -8.23883 -7.00667 -6.36828 -4.02654 1.65954 2.08125 2.16969 2.44480 3.18738 3.25761 3.28259 3.33751 3.42815 3.83952 4.04827 4.17126 4.27276 4.40342 4.53933 4.54354 4.63448 4.74687 4.89047 4.89801 4.95041 5.01351 5.09356 5.14853 5.30608 5.35180 5.43651 5.53104 5.58354 5.59265 5.69022 5.89839 6.08280 6.12742 6.13778 6.15536 6.31809 6.62445 6.68368 6.73416 6.89063 7.10331 7.19181 7.35840 7.63257 7.84428 7.94115 8.07584 8.62314 8.98254 9.60434 10.70877 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029592 B = 0.001862 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.985900 B =15032.792285 C =15683.242596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C 0.085 3.915 4 O -0.367 6.367 5 C 0.078 3.922 6 H 0.082 0.918 7 C -0.127 4.127 8 C 0.098 3.902 9 N -0.636 5.636 10 C 0.719 3.281 11 O -0.568 6.568 12 N -0.673 5.673 13 C 0.062 3.938 14 C -0.098 4.098 15 C -0.177 4.177 16 C 0.150 3.850 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.107 0.893 20 C 0.062 3.938 21 N -0.880 5.880 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.205 4.205 27 C -0.066 4.066 28 C 0.107 3.893 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.398 0.602 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.279 0.721 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.553 -1.829 12.612 31.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.169 4.169 3 C 0.009 3.991 4 O -0.286 6.286 5 C 0.019 3.981 6 H 0.099 0.901 7 C -0.165 4.165 8 C -0.025 4.025 9 N -0.377 5.377 10 C 0.421 3.579 11 O -0.444 6.444 12 N -0.320 5.320 13 C -0.031 4.031 14 C -0.118 4.118 15 C -0.196 4.196 16 C 0.098 3.902 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.141 4.141 21 N -0.518 5.518 22 Si 0.732 3.268 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.184 1.184 26 C -0.225 4.225 27 C -0.087 4.087 28 C -0.017 4.017 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.232 0.768 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.087 0.913 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.832 -2.351 11.842 30.337 hybrid contribution 0.357 0.354 0.485 0.699 sum -27.474 -1.997 12.327 30.179 Atomic orbital electron populations 1.23852 0.95547 1.02343 0.99986 1.22745 0.95642 0.98229 1.00322 1.21670 0.88654 0.96033 0.92756 1.87991 1.44213 1.36347 1.60007 1.23108 0.91112 0.87959 0.95938 0.90052 1.22867 0.96235 1.01631 0.95772 1.22303 0.95688 0.97914 0.86603 1.47372 1.06802 1.62335 1.21206 1.15410 0.79084 0.79360 0.84015 1.90958 1.78338 1.53189 1.21936 1.42288 1.05756 1.57953 1.26044 1.17101 0.80780 1.11568 0.93645 1.20307 0.91435 1.02541 0.97537 1.19956 0.95369 1.10833 0.93482 1.19143 0.84342 0.94016 0.92703 1.83562 1.20349 1.79622 1.28746 1.20780 0.95317 1.50438 0.79825 0.87588 1.24463 0.97593 0.95677 0.96318 1.69654 1.21449 1.47142 1.13570 0.86173 0.80397 0.78602 0.81667 1.19931 1.20880 1.18359 1.21232 0.91778 1.08789 1.00720 1.20944 0.96101 0.97125 0.94489 1.22184 0.85151 0.99513 0.94821 0.87719 0.88420 0.86426 0.92508 0.91894 0.89209 0.89168 0.90223 0.91044 0.76791 0.86646 0.86065 0.91105 0.84591 0.85338 0.91268 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 14.31 29.02 0.42 -0.49 16 2 C -0.15 -0.96 9.89 -36.03 -0.36 -1.32 16 3 C 0.08 0.54 6.19 36.00 0.22 0.77 16 4 O -0.37 -3.05 10.05 -35.23 -0.35 -3.41 16 5 C 0.08 0.55 3.45 -24.90 -0.09 0.46 16 6 H 0.08 0.43 7.82 -51.93 -0.41 0.02 16 7 C -0.13 -0.74 6.81 -24.59 -0.17 -0.91 16 8 C 0.10 0.66 6.53 -2.53 -0.02 0.64 16 9 N -0.64 -7.14 3.33 -176.24 -0.59 -7.72 16 10 C 0.72 11.14 8.33 -86.91 -0.72 10.41 16 11 O -0.57 -11.37 14.11 5.29 0.07 -11.30 16 12 N -0.67 -9.51 5.29 -14.18 -0.08 -9.59 16 13 C 0.06 1.10 6.30 -83.62 -0.53 0.58 16 14 C -0.10 -1.64 9.96 -39.42 -0.39 -2.04 16 15 C -0.18 -3.48 9.99 -39.42 -0.39 -3.87 16 16 C 0.15 3.54 6.65 -39.09 -0.26 3.28 16 17 O -0.22 -5.83 8.58 0.00 0.00 -5.83 16 18 C -0.39 -11.15 9.94 30.88 0.31 -10.84 16 19 H 0.11 3.13 5.43 -52.49 -0.28 2.85 16 20 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.83 13.96 55.48 0.77 -25.06 16 22 Si 0.91 21.91 28.62 -169.99 -4.86 17.05 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.21 -4.72 9.16 -39.42 -0.36 -5.08 16 27 C -0.07 -1.37 8.69 -39.42 -0.34 -1.72 16 28 C 0.11 1.08 6.64 -3.07 -0.02 1.06 16 29 H 0.10 0.42 8.06 -52.48 -0.42 0.00 16 30 H 0.10 0.39 7.90 -52.49 -0.41 -0.02 16 31 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.06 0.28 7.83 -51.93 -0.41 -0.13 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.45 7.38 -51.93 -0.38 0.07 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 4.06 7.36 -40.82 -0.30 3.76 16 39 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 40 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.14 3.29 5.63 -52.48 -0.30 2.99 16 43 H 0.13 2.70 6.22 -52.48 -0.33 2.37 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -34.24 378.47 -8.30 -42.55 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.18 Total: 4.98 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -2.80 Total: -7.37 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.11 Total: -42.37 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.28 Total: -20.53 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.86 Total: 17.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.24 -8.30 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254599813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.725 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds