Wall clock time and date at job start Tue Mar 31 2020 16:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 119.99998 * 2 1 4 4 O 1.42903 * 109.46790 * 135.00264 * 3 2 1 5 5 C 1.42907 * 113.99815 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.63986 * 26.85705 * 5 4 3 7 7 C 1.55154 * 110.72033 * 149.99641 * 5 4 3 8 8 C 1.54906 * 101.58213 * 153.86468 * 7 5 4 9 9 N 1.47431 * 104.83129 * 322.99340 * 8 7 5 10 10 C 1.34777 * 125.64625 * 203.86071 * 9 8 7 11 11 O 1.21591 * 120.00157 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99856 * 0.02562 * 10 9 8 13 13 C 1.40027 * 119.99721 * 175.48757 * 12 10 9 14 14 C 1.38906 * 119.99884 * 214.85556 * 13 12 10 15 15 C 1.38012 * 120.00101 * 179.74284 * 14 13 12 16 16 C 1.38911 * 119.99817 * 0.55393 * 15 14 13 17 17 O 1.35776 * 119.99753 * 179.72389 * 16 15 14 18 18 C 1.34817 * 116.99845 * 185.32256 * 17 16 15 19 19 H 1.07999 * 120.00014 * 354.96775 * 18 17 16 20 20 C 1.38630 * 120.00283 * 174.95936 * 18 17 16 21 21 N 1.31568 * 120.00499 * 180.02562 * 20 18 17 22 22 Si 1.86808 * 119.99601 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.46889 * 89.99744 * 22 20 18 24 24 H 1.48502 * 109.46720 * 209.99548 * 22 20 18 25 25 H 1.48497 * 109.47179 * 329.99677 * 22 20 18 26 26 C 1.38902 * 119.99802 * 359.69530 * 16 15 14 27 27 C 1.38011 * 120.00357 * 0.02638 * 26 16 15 28 28 C 1.47011 * 108.70318 * 24.12655 * 9 8 7 29 29 H 1.08005 * 120.00336 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99842 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.99842 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47446 * 15.00347 * 3 2 1 33 33 H 1.09005 * 109.46924 * 254.99532 * 3 2 1 34 34 H 1.09002 * 111.00418 * 35.79208 * 7 5 4 35 35 H 1.08996 * 111.00554 * 271.94220 * 7 5 4 36 36 H 1.08998 * 110.36971 * 204.15145 * 8 7 5 37 37 H 1.09005 * 110.36712 * 81.82723 * 8 7 5 38 38 H 0.96993 * 120.00081 * 355.47982 * 12 10 9 39 39 H 1.08005 * 120.00125 * 0.02562 * 14 13 12 40 40 H 1.07999 * 120.00471 * 180.27304 * 15 14 13 41 41 H 0.96993 * 120.00437 * 180.02562 * 21 20 18 42 42 H 1.08004 * 119.99828 * 180.02562 * 26 16 15 43 43 H 1.08004 * 119.99725 * 180.02562 * 27 26 16 44 44 H 1.09002 * 109.88330 * 118.35749 * 28 9 8 45 45 H 1.08998 * 109.88401 * 239.52253 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9085 2.4348 1.0321 6 1 3.3170 3.3017 0.7377 7 6 4.4819 2.6213 2.4616 8 6 5.7485 3.4678 2.1806 9 7 6.2783 2.9434 0.9087 10 6 7.5581 3.0312 0.4952 11 8 7.8839 2.5611 -0.5778 12 7 8.4767 3.6400 1.2711 13 6 9.8231 3.6486 0.8864 14 6 10.8211 3.5761 1.8498 15 6 12.1481 3.5793 1.4704 16 6 12.4857 3.6664 0.1258 17 8 13.7912 3.6752 -0.2471 18 6 14.0529 3.8725 -1.5548 19 1 13.2413 3.9333 -2.2647 20 6 15.3638 3.9975 -1.9883 21 7 15.6192 4.1906 -3.2644 22 14 16.7676 3.8918 -0.7604 23 1 17.2067 2.4792 -0.6310 24 1 17.9038 4.7219 -1.2349 25 1 16.3082 4.3903 0.5608 26 6 11.4878 3.7441 -0.8372 27 6 10.1607 3.7352 -0.4582 28 6 5.1782 2.3146 0.1632 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3855 2.1160 0.2660 33 1 2.4755 1.4867 -0.9927 34 1 4.7444 1.6610 2.9057 35 1 3.7815 3.1647 3.0957 36 1 6.4784 3.3350 2.9792 37 1 5.4858 4.5206 2.0768 38 1 8.2052 4.0722 2.0959 39 1 10.5587 3.5128 2.8956 40 1 12.9240 3.5185 2.2191 41 1 16.5363 4.2777 -3.5677 42 1 11.7503 3.8115 -1.8827 43 1 9.3849 3.7952 -1.2071 44 1 5.0292 2.8321 -0.7845 45 1 5.4057 1.2641 -0.0175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254599813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:06 Heat of formation + Delta-G solvation = -54.868995 kcal Electronic energy + Delta-G solvation = -27054.178190 eV Core-core repulsion = 23038.082547 eV Total energy + Delta-G solvation = -4016.095643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.83903 -40.76422 -39.81443 -38.42596 -37.49248 -35.48425 -34.70045 -34.35377 -32.06832 -31.82854 -30.11111 -29.17520 -27.21934 -26.82956 -24.76501 -23.91669 -22.91153 -22.15763 -21.03243 -20.81477 -20.09391 -19.39868 -18.97721 -18.33064 -18.04810 -17.06264 -16.78622 -16.41706 -16.23050 -16.01505 -15.76593 -15.66369 -15.41740 -15.29365 -14.55805 -14.45303 -14.36111 -14.19337 -14.13108 -13.87338 -13.81664 -13.42065 -13.33029 -13.13751 -12.83224 -12.73231 -12.56825 -12.45864 -12.01861 -11.87393 -11.68600 -11.52788 -11.38365 -11.02668 -10.92278 -10.66426 -10.23322 -9.86143 -9.79630 -8.64620 -8.48489 -6.21096 0.49086 0.53251 1.20350 1.33290 1.38137 1.41183 1.54463 1.99150 2.30015 2.69823 2.77874 2.93575 3.05301 3.17476 3.46744 3.52405 3.94155 4.04821 4.08137 4.10343 4.19380 4.26413 4.34080 4.45691 4.46496 4.55495 4.56526 4.63412 4.64141 4.70501 4.74932 4.94764 4.99654 5.03946 5.11088 5.17538 5.20835 5.39942 5.49354 5.59097 5.66746 5.72200 5.75445 5.91453 5.94083 6.20683 6.21085 6.83579 6.85007 7.43076 7.57629 8.63399 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029592 B = 0.001862 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.985900 B =15032.792285 C =15683.242596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.176 4.176 3 C 0.082 3.918 4 O -0.385 6.385 5 C 0.084 3.916 6 H 0.108 0.892 7 C -0.118 4.118 8 C 0.091 3.909 9 N -0.630 5.630 10 C 0.712 3.288 11 O -0.623 6.623 12 N -0.657 5.657 13 C 0.088 3.912 14 C -0.078 4.078 15 C -0.164 4.164 16 C 0.111 3.889 17 O -0.239 6.239 18 C -0.401 4.401 19 H 0.074 0.926 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.977 3.023 23 H -0.267 1.267 24 H -0.268 1.268 25 H -0.256 1.256 26 C -0.222 4.222 27 C -0.082 4.082 28 C 0.102 3.898 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.423 0.577 39 H 0.175 0.825 40 H 0.147 0.853 41 H 0.285 0.715 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.062 0.938 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.929 -1.135 17.287 35.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.006 3.994 4 O -0.304 6.304 5 C 0.025 3.975 6 H 0.125 0.875 7 C -0.156 4.156 8 C -0.030 4.030 9 N -0.369 5.369 10 C 0.414 3.586 11 O -0.503 6.503 12 N -0.307 5.307 13 C -0.007 4.007 14 C -0.098 4.098 15 C -0.183 4.183 16 C 0.062 3.938 17 O -0.147 6.147 18 C -0.477 4.477 19 H 0.092 0.908 20 C -0.191 4.191 21 N -0.567 5.567 22 Si 0.798 3.202 23 H -0.192 1.192 24 H -0.193 1.193 25 H -0.180 1.180 26 C -0.242 4.242 27 C -0.103 4.103 28 C -0.023 4.023 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.262 0.738 39 H 0.192 0.808 40 H 0.165 0.835 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.080 0.920 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -30.319 -1.641 16.594 34.602 hybrid contribution 0.633 0.085 -0.881 1.088 sum -29.686 -1.556 15.713 33.624 Atomic orbital electron populations 1.24057 0.95083 1.03454 0.97832 1.22780 0.96284 0.97991 1.02371 1.21795 0.88558 0.96685 0.92361 1.87978 1.44757 1.37292 1.60366 1.23172 0.89692 0.88483 0.96113 0.87471 1.22890 0.96232 1.01401 0.95099 1.22717 0.96404 0.99293 0.84605 1.47378 1.05381 1.61284 1.22870 1.15640 0.80415 0.79161 0.83394 1.90937 1.79661 1.55336 1.24414 1.42038 1.04014 1.57916 1.26759 1.17228 0.83009 1.07880 0.92556 1.20814 0.89503 0.99505 0.99963 1.20394 0.97475 1.08581 0.91888 1.19679 0.83368 0.96159 0.94598 1.83499 1.21989 1.82209 1.27000 1.20679 0.95080 1.51224 0.80749 0.90821 1.25359 1.00107 0.95298 0.98316 1.69750 1.22380 1.49105 1.15438 0.85132 0.77039 0.79032 0.78972 1.19163 1.19266 1.18014 1.21105 0.93229 1.10380 0.99518 1.20905 0.94625 0.98459 0.96301 1.22314 0.86533 0.97725 0.95690 0.86875 0.87032 0.87555 0.90504 0.92210 0.90330 0.85933 0.88367 0.88436 0.73801 0.80798 0.83498 0.90577 0.87805 0.86467 0.91964 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 14.31 67.78 0.97 -0.42 16 2 C -0.18 -2.10 9.89 25.65 0.25 -1.85 16 3 C 0.08 0.93 6.19 71.23 0.44 1.38 16 4 O -0.39 -5.84 10.05 -148.98 -1.50 -7.34 16 5 C 0.08 0.98 3.45 31.78 0.11 1.08 16 6 H 0.11 0.73 7.82 -2.39 -0.02 0.71 16 7 C -0.12 -0.92 6.81 31.98 0.22 -0.70 16 8 C 0.09 0.83 6.53 86.85 0.57 1.40 16 9 N -0.63 -12.87 3.33 -829.76 -2.76 -15.63 16 10 C 0.71 21.16 8.33 179.05 1.49 22.65 16 11 O -0.62 -25.60 14.11 -4.00 -0.06 -25.66 16 12 N -0.66 -16.51 5.29 -317.04 -1.68 -18.18 16 13 C 0.09 2.93 6.30 38.15 0.24 3.17 16 14 C -0.08 -2.28 9.96 22.38 0.22 -2.06 16 15 C -0.16 -6.05 9.99 22.38 0.22 -5.83 16 16 C 0.11 5.38 6.65 22.59 0.15 5.53 16 17 O -0.24 -13.28 8.58 -22.90 -0.20 -13.48 16 18 C -0.40 -24.54 9.94 67.91 0.68 -23.87 16 19 H 0.07 4.83 5.43 -2.91 -0.02 4.81 16 20 C 0.01 0.43 5.49 84.83 0.47 0.89 16 21 N -0.93 -57.02 13.96 21.61 0.30 -56.72 16 22 Si 0.98 46.05 28.62 68.60 1.96 48.02 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 26 C -0.22 -10.89 9.16 22.37 0.20 -10.69 16 27 C -0.08 -3.51 8.69 22.38 0.19 -3.31 16 28 C 0.10 1.99 6.64 86.73 0.58 2.57 16 29 H 0.11 0.72 8.06 -2.91 -0.02 0.70 16 30 H 0.11 0.61 7.90 -2.91 -0.02 0.58 16 31 H 0.11 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.08 0.55 7.83 -2.39 -0.02 0.53 16 33 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.10 0.58 7.38 -2.39 -0.02 0.56 16 37 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.42 6.46 7.36 -92.71 -0.68 5.77 16 39 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.15 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 42 H 0.10 5.66 5.63 -2.91 -0.02 5.64 16 43 H 0.12 5.23 6.22 -2.91 -0.02 5.22 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.28 8.06 -2.39 -0.02 1.26 16 Total: -1.00 -82.32 378.47 3.41 -78.91 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.33 Total: 20.14 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 7.00 Total: -10.06 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -4.14 Total: -90.53 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -1.75 Total: -46.47 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.96 Total: 48.02 kcal Total: -82.32 3.41 -78.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254599813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.036 kcal (2) G-P(sol) polarization free energy of solvation -82.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds