Wall clock time and date at job start Tue Mar 31 2020 16:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50694 * 120.00628 * 2 1 4 4 O 1.42896 * 109.47653 * 135.00271 * 3 2 1 5 5 C 1.42898 * 114.00434 * 180.02562 * 4 3 2 6 6 H 1.09001 * 110.77600 * 333.23801 * 5 4 3 7 7 C 1.55154 * 110.72161 * 209.99775 * 5 4 3 8 8 C 1.54909 * 101.58138 * 206.13177 * 7 5 4 9 9 N 1.47422 * 104.83186 * 37.01284 * 8 7 5 10 10 C 1.34779 * 125.65156 * 155.83934 * 9 8 7 11 11 O 1.21586 * 120.00226 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99561 * 0.02562 * 10 9 8 13 13 C 1.40031 * 119.99641 * 175.49882 * 12 10 9 14 14 C 1.38916 * 120.00044 * 214.85002 * 13 12 10 15 15 C 1.38003 * 119.99963 * 179.74598 * 14 13 12 16 16 C 1.38907 * 119.99986 * 0.55658 * 15 14 13 17 17 O 1.35777 * 120.00184 * 179.72270 * 16 15 14 18 18 C 1.34814 * 117.00470 * 185.32581 * 17 16 15 19 19 H 1.07997 * 119.99472 * 354.95919 * 18 17 16 20 20 C 1.38626 * 120.00231 * 174.96369 * 18 17 16 21 21 N 1.31569 * 120.00187 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99772 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47372 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.46975 * 120.00140 * 22 20 18 25 25 H 1.48504 * 109.47185 * 239.99837 * 22 20 18 26 26 C 1.38904 * 120.00272 * 359.70049 * 16 15 14 27 27 C 1.38010 * 119.99928 * 0.02562 * 26 16 15 28 28 C 1.47023 * 108.70511 * 335.86793 * 9 8 7 29 29 H 1.07993 * 120.00496 * 180.02562 * 1 2 3 30 30 H 1.08007 * 119.99811 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99498 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47120 * 14.99638 * 3 2 1 33 33 H 1.09003 * 109.47362 * 255.00205 * 3 2 1 34 34 H 1.09001 * 111.00328 * 88.05987 * 7 5 4 35 35 H 1.08995 * 111.00466 * 324.20660 * 7 5 4 36 36 H 1.09002 * 110.36555 * 155.84803 * 8 7 5 37 37 H 1.09002 * 110.36935 * 278.16907 * 8 7 5 38 38 H 0.96996 * 120.00167 * 355.50658 * 12 10 9 39 39 H 1.07999 * 119.99668 * 0.03064 * 14 13 12 40 40 H 1.08000 * 120.00611 * 180.27953 * 15 14 13 41 41 H 0.97005 * 120.00091 * 179.97438 * 21 20 18 42 42 H 1.07995 * 120.00132 * 180.02562 * 26 16 15 43 43 H 1.07996 * 120.00169 * 179.97438 * 27 26 16 44 44 H 1.09002 * 109.88599 * 120.47840 * 28 9 8 45 45 H 1.08999 * 109.88165 * 241.49331 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9079 2.4350 1.0327 6 1 3.8807 2.9791 0.0886 7 6 5.3701 2.1084 1.4361 8 6 5.8100 3.4322 2.1096 9 7 4.6140 3.9044 2.8307 10 6 4.6142 4.7267 3.8986 11 8 3.5630 5.0515 4.4160 12 7 5.7798 5.1889 4.3929 13 6 5.7766 6.1166 5.4418 14 6 6.7512 7.1050 5.4978 15 6 6.7449 8.0225 6.5287 16 6 5.7710 7.9506 7.5165 17 8 5.7682 8.8499 8.5338 18 6 4.8657 8.6591 9.5170 19 1 4.1343 7.8690 9.4326 20 6 4.8766 9.4770 10.6362 21 7 5.7679 10.4392 10.7392 22 14 3.6256 9.2130 11.9981 23 1 2.7397 8.0753 11.6429 24 1 4.3332 8.9121 13.2686 25 1 2.8090 10.4420 12.1653 26 6 4.7997 6.9591 7.4635 27 6 4.8025 6.0450 6.4295 28 6 3.4210 3.3293 2.1925 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3856 2.1161 0.2659 33 1 2.4756 1.4867 -0.9927 34 1 5.9794 1.8956 0.5577 35 1 5.4044 1.2799 2.1435 36 1 6.6266 3.2494 2.8081 37 1 6.1105 4.1599 1.3557 38 1 6.6208 4.8790 4.0220 39 1 7.5110 7.1582 4.7322 40 1 7.4999 8.7937 6.5699 41 1 5.7753 11.0118 11.5222 42 1 4.0423 6.9035 8.2313 43 1 4.0476 5.2738 6.3884 44 1 2.8664 2.7303 2.9148 45 1 2.7858 4.1269 1.8071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254599814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:11 Heat of formation + Delta-G solvation = -33.744069 kcal Electronic energy + Delta-G solvation = -27068.010960 eV Core-core repulsion = 23052.831363 eV Total energy + Delta-G solvation = -4015.179597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.63951 -39.32241 -38.56247 -37.12032 -36.21807 -34.25458 -33.86679 -32.15833 -31.13124 -30.13713 -29.16217 -27.64600 -26.37449 -25.23208 -23.79753 -22.24927 -21.82755 -21.15011 -20.36984 -19.74584 -18.59258 -17.85473 -17.73900 -17.14735 -16.46496 -16.09220 -15.86608 -15.46550 -14.90639 -14.79394 -14.45547 -14.21973 -14.00674 -13.60689 -13.56060 -13.37509 -13.18039 -13.05460 -12.82986 -12.65333 -12.54185 -12.33742 -12.11170 -11.69916 -11.53092 -11.47139 -11.40593 -11.14469 -11.00551 -10.69963 -10.38477 -10.31987 -9.94554 -9.77962 -9.65139 -9.14465 -8.84605 -8.63036 -8.15051 -6.87354 -6.40297 -3.97663 1.67767 2.17784 2.27202 2.48626 3.15155 3.18496 3.24199 3.28175 3.34145 3.87835 4.01779 4.06379 4.19863 4.42784 4.56857 4.62712 4.65979 4.76097 4.86925 4.96278 5.05513 5.11794 5.14120 5.30463 5.33248 5.35535 5.45721 5.55857 5.59851 5.71892 5.79634 5.93896 6.09665 6.17375 6.19298 6.23785 6.41501 6.70828 6.76403 6.78444 7.01593 7.15874 7.20041 7.39427 7.49496 7.83701 7.99426 8.05563 8.67353 9.05900 9.75829 10.77838 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.001965 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.707263 B =14244.165064 C =15415.840136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.155 4.155 3 C 0.085 3.915 4 O -0.367 6.367 5 C 0.078 3.922 6 H 0.082 0.918 7 C -0.127 4.127 8 C 0.099 3.901 9 N -0.637 5.637 10 C 0.719 3.281 11 O -0.570 6.570 12 N -0.671 5.671 13 C 0.052 3.948 14 C -0.095 4.095 15 C -0.177 4.177 16 C 0.145 3.855 17 O -0.178 6.178 18 C -0.389 4.389 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.219 4.219 27 C -0.064 4.064 28 C 0.108 3.892 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.397 0.603 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.269 0.731 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.078 0.922 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -19.021 -23.341 30.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.009 3.991 4 O -0.286 6.286 5 C 0.019 3.981 6 H 0.100 0.900 7 C -0.165 4.165 8 C -0.024 4.024 9 N -0.378 5.378 10 C 0.421 3.579 11 O -0.446 6.446 12 N -0.319 5.319 13 C -0.041 4.041 14 C -0.115 4.115 15 C -0.197 4.197 16 C 0.091 3.909 17 O -0.082 6.082 18 C -0.465 4.465 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.239 4.239 27 C -0.084 4.084 28 C -0.017 4.017 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.231 0.769 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.078 0.922 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.096 0.904 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.449 -18.504 -22.579 29.295 hybrid contribution -0.292 -0.114 0.243 0.397 sum -2.741 -18.618 -22.335 29.206 Atomic orbital electron populations 1.23890 0.95611 1.02469 0.99409 1.22709 0.95651 0.98070 1.00833 1.21663 0.89004 0.96212 0.92196 1.87985 1.44471 1.35438 1.60667 1.23101 0.91307 0.86212 0.97489 0.90043 1.22875 0.94151 0.97769 1.01744 1.22291 0.88956 0.95108 0.96081 1.47378 1.07815 1.51113 1.31468 1.15413 0.84531 0.78766 0.79177 1.90945 1.30664 1.62057 1.60958 1.42276 1.06791 1.45866 1.36977 1.17047 1.01867 0.94488 0.90663 1.20311 0.98948 0.93788 0.98468 1.19961 1.01033 1.02474 0.96256 1.19407 0.92935 0.88978 0.89541 1.83970 1.53436 1.42970 1.27807 1.21383 1.10549 1.18021 0.96572 0.88982 1.25273 0.98056 0.95477 0.97765 1.70056 1.33461 1.17363 1.29037 0.85654 0.79368 0.78633 0.79837 1.19052 1.20185 1.20188 1.21113 1.02455 0.98850 1.01474 1.20891 0.97464 0.98690 0.91385 1.22174 0.87761 0.96650 0.95066 0.87704 0.88283 0.86545 0.92406 0.92090 0.89159 0.89227 0.90289 0.91020 0.76876 0.86825 0.86054 0.92154 0.85213 0.85595 0.90415 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 14.31 29.02 0.42 -0.57 16 2 C -0.15 -0.98 9.89 -36.03 -0.36 -1.34 16 3 C 0.09 0.55 6.19 36.00 0.22 0.78 16 4 O -0.37 -3.09 10.05 -35.23 -0.35 -3.44 16 5 C 0.08 0.56 3.44 -24.89 -0.09 0.48 16 6 H 0.08 0.44 7.83 -51.93 -0.41 0.04 16 7 C -0.13 -0.76 6.81 -24.58 -0.17 -0.93 16 8 C 0.10 0.70 6.61 -2.53 -0.02 0.68 16 9 N -0.64 -7.36 3.33 -176.23 -0.59 -7.94 16 10 C 0.72 11.43 8.33 -86.92 -0.72 10.70 16 11 O -0.57 -11.59 14.11 5.29 0.07 -11.51 16 12 N -0.67 -9.88 5.30 -14.18 -0.08 -9.96 16 13 C 0.05 0.97 6.30 -83.61 -0.53 0.44 16 14 C -0.09 -1.69 9.96 -39.42 -0.39 -2.08 16 15 C -0.18 -3.75 9.98 -39.42 -0.39 -4.15 16 16 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 17 O -0.18 -5.18 9.75 0.01 0.00 -5.18 16 18 C -0.39 -11.12 9.48 30.88 0.29 -10.83 16 19 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 22 Si 0.94 21.07 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.22 -5.11 9.16 -39.42 -0.36 -5.47 16 27 C -0.06 -1.36 8.69 -39.42 -0.34 -1.70 16 28 C 0.11 1.12 6.64 -3.06 -0.02 1.10 16 29 H 0.10 0.47 8.06 -52.49 -0.42 0.04 16 30 H 0.10 0.50 7.90 -52.48 -0.41 0.08 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.06 0.36 7.86 -51.93 -0.41 -0.05 16 33 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.47 7.23 -51.93 -0.38 0.09 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.40 4.30 7.27 -40.82 -0.30 4.00 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.13 3.05 5.63 -52.49 -0.30 2.76 16 43 H 0.13 2.69 6.22 -52.49 -0.33 2.36 16 44 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -35.20 379.45 -8.45 -43.66 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.15 Total: 6.10 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.81 Total: -8.59 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.10 Total: -42.79 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.28 Total: -20.13 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.20 -8.45 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254599814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.911 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds