Wall clock time and date at job start Tue Mar 31 2020 16:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50694 * 120.00628 * 2 1 4 4 O 1.42896 * 109.47653 * 135.00271 * 3 2 1 5 5 C 1.42898 * 114.00434 * 180.02562 * 4 3 2 6 6 H 1.09001 * 110.77600 * 333.23801 * 5 4 3 7 7 C 1.55154 * 110.72161 * 209.99775 * 5 4 3 8 8 C 1.54909 * 101.58138 * 206.13177 * 7 5 4 9 9 N 1.47422 * 104.83186 * 37.01284 * 8 7 5 10 10 C 1.34779 * 125.65156 * 155.83934 * 9 8 7 11 11 O 1.21586 * 120.00226 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99561 * 0.02562 * 10 9 8 13 13 C 1.40031 * 119.99641 * 175.49882 * 12 10 9 14 14 C 1.38916 * 120.00044 * 214.85002 * 13 12 10 15 15 C 1.38003 * 119.99963 * 179.74598 * 14 13 12 16 16 C 1.38907 * 119.99986 * 0.55658 * 15 14 13 17 17 O 1.35777 * 120.00184 * 179.72270 * 16 15 14 18 18 C 1.34814 * 117.00470 * 185.32581 * 17 16 15 19 19 H 1.07997 * 119.99472 * 354.95919 * 18 17 16 20 20 C 1.38626 * 120.00231 * 174.96369 * 18 17 16 21 21 N 1.31569 * 120.00187 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99772 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47372 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.46975 * 120.00140 * 22 20 18 25 25 H 1.48504 * 109.47185 * 239.99837 * 22 20 18 26 26 C 1.38904 * 120.00272 * 359.70049 * 16 15 14 27 27 C 1.38010 * 119.99928 * 0.02562 * 26 16 15 28 28 C 1.47023 * 108.70511 * 335.86793 * 9 8 7 29 29 H 1.07993 * 120.00496 * 180.02562 * 1 2 3 30 30 H 1.08007 * 119.99811 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99498 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47120 * 14.99638 * 3 2 1 33 33 H 1.09003 * 109.47362 * 255.00205 * 3 2 1 34 34 H 1.09001 * 111.00328 * 88.05987 * 7 5 4 35 35 H 1.08995 * 111.00466 * 324.20660 * 7 5 4 36 36 H 1.09002 * 110.36555 * 155.84803 * 8 7 5 37 37 H 1.09002 * 110.36935 * 278.16907 * 8 7 5 38 38 H 0.96996 * 120.00167 * 355.50658 * 12 10 9 39 39 H 1.07999 * 119.99668 * 0.03064 * 14 13 12 40 40 H 1.08000 * 120.00611 * 180.27953 * 15 14 13 41 41 H 0.97005 * 120.00091 * 179.97438 * 21 20 18 42 42 H 1.07995 * 120.00132 * 180.02562 * 26 16 15 43 43 H 1.07996 * 120.00169 * 179.97438 * 27 26 16 44 44 H 1.09002 * 109.88599 * 120.47840 * 28 9 8 45 45 H 1.08999 * 109.88165 * 241.49331 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9079 2.4350 1.0327 6 1 3.8807 2.9791 0.0886 7 6 5.3701 2.1084 1.4361 8 6 5.8100 3.4322 2.1096 9 7 4.6140 3.9044 2.8307 10 6 4.6142 4.7267 3.8986 11 8 3.5630 5.0515 4.4160 12 7 5.7798 5.1889 4.3929 13 6 5.7766 6.1166 5.4418 14 6 6.7512 7.1050 5.4978 15 6 6.7449 8.0225 6.5287 16 6 5.7710 7.9506 7.5165 17 8 5.7682 8.8499 8.5338 18 6 4.8657 8.6591 9.5170 19 1 4.1343 7.8690 9.4326 20 6 4.8766 9.4770 10.6362 21 7 5.7679 10.4392 10.7392 22 14 3.6256 9.2130 11.9981 23 1 2.7397 8.0753 11.6429 24 1 4.3332 8.9121 13.2686 25 1 2.8090 10.4420 12.1653 26 6 4.7997 6.9591 7.4635 27 6 4.8025 6.0450 6.4295 28 6 3.4210 3.3293 2.1925 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3856 2.1161 0.2659 33 1 2.4756 1.4867 -0.9927 34 1 5.9794 1.8956 0.5577 35 1 5.4044 1.2799 2.1435 36 1 6.6266 3.2494 2.8081 37 1 6.1105 4.1599 1.3557 38 1 6.6208 4.8790 4.0220 39 1 7.5110 7.1582 4.7322 40 1 7.4999 8.7937 6.5699 41 1 5.7753 11.0118 11.5222 42 1 4.0423 6.9035 8.2313 43 1 4.0476 5.2738 6.3884 44 1 2.8664 2.7303 2.9148 45 1 2.7858 4.1269 1.8071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254599814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:10 Heat of formation + Delta-G solvation = -57.506834 kcal Electronic energy + Delta-G solvation = -27069.041391 eV Core-core repulsion = 23052.831363 eV Total energy + Delta-G solvation = -4016.210028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.81218 -40.66992 -39.77250 -38.34993 -37.46902 -35.45960 -34.69612 -34.15784 -32.03457 -31.79849 -30.04158 -29.03760 -27.30814 -26.87436 -24.76234 -23.85163 -22.99718 -22.15837 -21.02739 -20.79011 -20.06301 -19.46243 -18.76471 -18.39670 -17.93558 -16.92411 -16.64694 -16.46982 -16.31295 -16.19259 -15.62979 -15.49581 -15.39625 -15.20727 -14.70977 -14.63919 -14.41098 -14.15552 -13.82643 -13.66832 -13.57871 -13.28978 -13.26898 -13.11868 -12.90238 -12.72971 -12.64241 -12.43316 -12.12047 -11.88017 -11.67079 -11.48880 -11.33921 -10.96290 -10.86408 -10.56167 -10.26219 -9.83560 -9.77643 -8.58371 -8.46869 -6.13344 0.52703 0.58051 1.20477 1.34617 1.39723 1.43165 1.52483 2.01518 2.17789 2.71296 2.82696 2.95404 3.15695 3.46796 3.52480 3.52698 3.94603 4.06360 4.09483 4.13125 4.19882 4.26404 4.36275 4.41467 4.48609 4.57257 4.57290 4.66681 4.67738 4.71193 4.76202 4.95223 4.98341 5.06347 5.12614 5.13055 5.20988 5.35477 5.45838 5.59650 5.65847 5.70705 5.72528 5.94658 6.02926 6.17803 6.21166 6.85031 6.97977 7.44555 7.77362 8.75935 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.001965 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.707263 B =14244.165064 C =15415.840136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.170 4.170 3 C 0.081 3.919 4 O -0.385 6.385 5 C 0.085 3.915 6 H 0.108 0.892 7 C -0.119 4.119 8 C 0.091 3.909 9 N -0.631 5.631 10 C 0.712 3.288 11 O -0.622 6.622 12 N -0.657 5.657 13 C 0.080 3.920 14 C -0.075 4.075 15 C -0.176 4.176 16 C 0.106 3.894 17 O -0.227 6.227 18 C -0.413 4.413 19 H 0.096 0.904 20 C -0.020 4.020 21 N -0.917 5.917 22 Si 1.016 2.984 23 H -0.258 1.258 24 H -0.265 1.265 25 H -0.267 1.267 26 C -0.228 4.228 27 C -0.078 4.078 28 C 0.102 3.898 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.421 0.579 39 H 0.169 0.831 40 H 0.132 0.868 41 H 0.273 0.727 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.051 0.949 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.767 -20.967 -26.407 33.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C 0.005 3.995 4 O -0.303 6.303 5 C 0.026 3.974 6 H 0.126 0.874 7 C -0.157 4.157 8 C -0.030 4.030 9 N -0.370 5.370 10 C 0.414 3.586 11 O -0.503 6.503 12 N -0.307 5.307 13 C -0.015 4.015 14 C -0.096 4.096 15 C -0.196 4.196 16 C 0.055 3.945 17 O -0.133 6.133 18 C -0.489 4.489 19 H 0.113 0.887 20 C -0.218 4.218 21 N -0.555 5.555 22 Si 0.835 3.165 23 H -0.181 1.181 24 H -0.190 1.190 25 H -0.192 1.192 26 C -0.248 4.248 27 C -0.098 4.098 28 C -0.022 4.022 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.141 0.859 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.260 0.740 39 H 0.187 0.813 40 H 0.150 0.850 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.138 0.862 44 H 0.070 0.930 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.297 -20.536 -25.753 32.964 hybrid contribution -0.619 0.245 0.832 1.065 sum -1.917 -20.291 -24.922 32.194 Atomic orbital electron populations 1.24063 0.95577 1.03178 0.98524 1.22818 0.96019 0.98250 1.01694 1.21801 0.88749 0.96183 0.92750 1.87971 1.45044 1.35860 1.61455 1.23161 0.91654 0.85617 0.96981 0.87420 1.22897 0.93484 0.96664 1.02617 1.22701 0.87412 0.96181 0.96687 1.47380 1.10135 1.49354 1.30094 1.15619 0.83855 0.79161 0.79918 1.90920 1.32508 1.64017 1.62821 1.42033 1.07882 1.44993 1.35823 1.17162 1.00021 0.94273 0.90011 1.20738 0.99257 0.91474 0.98083 1.20318 1.00098 1.03326 0.95858 1.19930 0.94837 0.89620 0.90075 1.83931 1.54754 1.45333 1.29318 1.21786 1.11106 1.18636 0.97380 0.88711 1.26502 1.00279 0.94904 1.00100 1.70179 1.35994 1.18968 1.30350 0.84571 0.76645 0.78983 0.76264 1.18137 1.18983 1.19183 1.21074 1.02187 0.99494 1.02052 1.20919 0.98640 0.98376 0.91892 1.22313 0.87513 0.96753 0.95625 0.86717 0.87958 0.86454 0.92574 0.90150 0.85888 0.90356 0.88659 0.88386 0.73991 0.81322 0.85004 0.91787 0.86763 0.86155 0.93049 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 14.31 67.78 0.97 -0.81 16 2 C -0.17 -1.96 9.89 25.65 0.25 -1.71 16 3 C 0.08 0.91 6.19 71.23 0.44 1.35 16 4 O -0.38 -5.74 10.05 -148.98 -1.50 -7.24 16 5 C 0.08 0.98 3.44 31.78 0.11 1.09 16 6 H 0.11 0.72 7.83 -2.39 -0.02 0.70 16 7 C -0.12 -0.94 6.81 31.99 0.22 -0.72 16 8 C 0.09 0.88 6.61 86.86 0.57 1.46 16 9 N -0.63 -13.06 3.33 -829.74 -2.76 -15.82 16 10 C 0.71 21.42 8.33 179.05 1.49 22.91 16 11 O -0.62 -25.40 14.11 -3.99 -0.06 -25.46 16 12 N -0.66 -17.21 5.30 -317.04 -1.68 -18.89 16 13 C 0.08 2.77 6.30 38.15 0.24 3.01 16 14 C -0.08 -2.44 9.96 22.38 0.22 -2.22 16 15 C -0.18 -7.33 9.98 22.37 0.22 -7.10 16 16 C 0.11 5.46 6.65 22.59 0.15 5.61 16 17 O -0.23 -13.92 9.75 -22.87 -0.22 -14.15 16 18 C -0.41 -24.94 9.48 67.91 0.64 -24.30 16 19 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 20 C -0.02 -1.18 5.49 84.82 0.47 -0.71 16 21 N -0.92 -56.87 13.67 21.61 0.30 -56.58 16 22 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 C -0.23 -11.10 9.16 22.38 0.20 -10.90 16 27 C -0.08 -3.32 8.69 22.38 0.19 -3.13 16 28 C 0.10 2.00 6.64 86.73 0.58 2.57 16 29 H 0.11 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.10 0.93 7.90 -2.91 -0.02 0.91 16 31 H 0.12 1.29 8.06 -2.91 -0.02 1.26 16 32 H 0.06 0.63 7.86 -2.38 -0.02 0.61 16 33 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 34 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.65 7.23 -2.39 -0.02 0.63 16 37 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.42 7.04 7.27 -92.71 -0.67 6.36 16 39 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.13 5.16 8.06 -2.91 -0.02 5.13 16 41 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 42 H 0.11 5.77 5.63 -2.91 -0.02 5.76 16 43 H 0.12 5.29 6.22 -2.91 -0.02 5.27 16 44 H 0.05 1.27 8.06 -2.39 -0.02 1.25 16 45 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -83.51 379.45 3.43 -80.08 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.34 Total: 25.06 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 6.98 Total: -13.61 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -4.14 Total: -91.28 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -1.78 Total: -46.84 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -83.51 3.43 -80.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254599814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.577 kcal (2) G-P(sol) polarization free energy of solvation -83.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds