Wall clock time and date at job start Tue Mar 31 2020 17:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.64095 * 2 1 4 4 C 1.54320 * 110.72019 * 123.14389 * 2 1 3 5 5 N 1.47013 * 107.27175 * 140.55649 * 4 2 1 6 6 C 1.34778 * 125.64795 * 181.02007 * 5 4 2 7 7 O 1.21364 * 120.00287 * 0.02562 * 6 5 4 8 8 C 1.49352 * 120.00196 * 179.97438 * 6 5 4 9 9 O 1.21382 * 120.00111 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00196 * 179.97438 * 8 6 5 11 11 C 1.39729 * 119.99940 * 185.27879 * 10 8 6 12 12 C 1.38927 * 120.07337 * 213.06072 * 11 10 8 13 13 C 1.38097 * 119.92044 * 179.72110 * 12 11 10 14 14 C 1.38301 * 120.07673 * 0.55490 * 13 12 11 15 15 C 1.50700 * 119.92351 * 179.69870 * 14 13 12 16 16 C 1.50699 * 109.47008 * 270.01982 * 15 14 13 17 17 H 1.07999 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99797 * 179.97438 * 16 15 14 19 19 N 1.31523 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00220 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47112 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47417 * 119.99798 * 20 18 16 23 23 H 1.48499 * 109.47153 * 240.00320 * 20 18 16 24 24 C 1.38289 * 120.15133 * 359.71816 * 14 13 12 25 25 C 1.38103 * 120.07413 * 0.02562 * 24 14 13 26 26 C 1.47423 * 108.70598 * 1.28945 * 5 4 2 27 27 C 1.55125 * 104.71759 * 335.54986 * 26 5 4 28 28 H 1.09003 * 111.19683 * 279.19558 * 27 26 5 29 29 O 1.42904 * 110.94043 * 155.29263 * 27 26 5 30 30 H 1.09000 * 109.47128 * 298.31203 * 1 2 3 31 31 H 1.09002 * 109.47384 * 58.30948 * 1 2 3 32 32 H 1.08995 * 109.47142 * 178.30766 * 1 2 3 33 33 H 1.09001 * 109.88377 * 21.13555 * 4 2 1 34 34 H 1.09005 * 110.01131 * 260.04748 * 4 2 1 35 35 H 0.96997 * 120.00109 * 5.27771 * 10 8 6 36 36 H 1.08004 * 120.04089 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.96492 * 180.27618 * 13 12 11 38 38 H 1.09005 * 109.46845 * 30.02151 * 15 14 13 39 39 H 1.08995 * 109.46890 * 150.02057 * 15 14 13 40 40 H 0.96998 * 120.00000 * 180.02562 * 19 18 16 41 41 H 1.07994 * 119.96390 * 179.97438 * 24 14 13 42 42 H 1.08002 * 120.03382 * 179.97438 * 25 24 14 43 43 H 1.08999 * 110.37258 * 94.48060 * 26 5 4 44 44 H 1.09004 * 110.36728 * 216.80737 * 26 5 4 45 45 H 0.96697 * 114.00058 * 67.95548 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2444 -1.5494 0.7416 6 6 3.9922 -2.3810 1.4938 7 8 3.7190 -2.5520 2.6638 8 6 5.1566 -3.0930 0.8871 9 8 5.4297 -2.9224 -0.2832 10 7 5.9047 -3.9242 1.6394 11 6 7.0574 -4.5043 1.1037 12 6 7.4431 -5.7793 1.4985 13 6 8.5798 -6.3520 0.9627 14 6 9.3402 -5.6533 0.0427 15 6 10.5837 -6.2788 -0.5347 16 6 11.7681 -5.9333 0.3307 17 1 11.6338 -5.3222 1.2110 18 6 13.0231 -6.3982 -0.0009 19 7 13.1866 -7.1429 -1.0726 20 14 14.4911 -5.9706 1.0721 21 1 14.0440 -5.1265 2.2092 22 1 15.1042 -7.2189 1.5927 23 1 15.4923 -5.2257 0.2671 24 6 8.9623 -4.3818 -0.3482 25 6 7.8238 -3.8051 0.1797 26 6 3.4666 -1.2466 -0.6840 27 6 2.0790 -0.7975 -1.2124 28 1 1.4451 -1.6560 -1.4347 29 8 2.2171 0.0442 -2.3590 30 1 -0.3633 0.4874 0.9047 31 1 -0.3634 0.5399 -0.8744 32 1 -0.3633 -1.0272 -0.0303 33 1 1.3129 -1.4731 1.5800 34 1 2.3735 -0.1010 1.9998 35 1 5.6429 -4.1196 2.5527 36 1 6.8524 -6.3236 2.2205 37 1 8.8778 -7.3449 1.2657 38 1 10.4629 -7.3616 -0.5699 39 1 10.7471 -5.8985 -1.5430 40 1 14.0694 -7.4702 -1.3056 41 1 9.5585 -3.8387 -1.0665 42 1 7.5295 -2.8119 -0.1258 43 1 4.1947 -0.4427 -0.7922 44 1 3.8031 -2.1382 -1.2132 45 1 2.5571 -0.4103 -3.1419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262698071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:02 Heat of formation + Delta-G solvation = -87.394646 kcal Electronic energy + Delta-G solvation = -27473.205268 eV Core-core repulsion = 23455.699207 eV Total energy + Delta-G solvation = -4017.506061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28995 -39.90867 -38.62979 -38.00327 -36.13799 -35.10543 -33.24935 -33.01386 -30.62621 -30.40712 -29.17605 -27.86710 -26.79539 -24.74944 -23.39991 -22.54373 -22.41467 -20.92026 -20.42697 -19.96292 -18.39240 -17.97934 -17.40855 -16.83304 -16.35679 -16.31578 -15.85325 -15.19792 -15.05088 -14.75158 -14.38204 -14.33026 -14.18502 -13.98915 -13.64394 -13.40803 -13.15699 -13.04225 -12.89211 -12.66571 -12.61757 -12.14516 -12.10158 -11.77003 -11.61069 -11.42988 -11.32364 -10.93512 -10.86976 -10.70119 -10.59502 -10.43052 -10.11451 -9.76209 -9.45854 -9.33250 -9.20858 -8.45456 -8.38589 -7.50928 -6.06453 -4.10599 1.02043 1.85757 1.95687 2.05936 2.98730 3.11280 3.28014 3.35858 3.40794 3.64263 3.86773 4.04188 4.16789 4.33561 4.40088 4.50311 4.69823 4.76993 4.93889 5.09217 5.21533 5.26346 5.27488 5.34673 5.41014 5.41573 5.44427 5.56262 5.65406 5.72947 5.79764 5.92726 5.97959 6.10663 6.54096 6.55229 6.70856 6.76348 7.07667 7.09294 7.11908 7.15632 7.43500 7.47295 7.60271 7.80432 7.83382 7.89370 8.28806 8.95000 9.53471 11.03176 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025231 B = 0.002063 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.470167 B =13571.173980 C =14071.976609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.097 0.903 4 C 0.110 3.890 5 N -0.589 5.589 6 C 0.525 3.475 7 O -0.518 6.518 8 C 0.505 3.495 9 O -0.499 6.499 10 N -0.633 5.633 11 C 0.096 3.904 12 C -0.135 4.135 13 C -0.108 4.108 14 C -0.037 4.037 15 C 0.046 3.954 16 C -0.511 4.511 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.108 4.108 25 C -0.114 4.114 26 C 0.064 3.936 27 C 0.092 3.908 28 H 0.077 0.923 29 O -0.553 6.553 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.417 0.583 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.601 12.244 1.496 28.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.116 0.884 4 C -0.012 4.012 5 N -0.324 5.324 6 C 0.308 3.692 7 O -0.394 6.394 8 C 0.286 3.714 9 O -0.374 6.374 10 N -0.279 5.279 11 C 0.004 3.996 12 C -0.155 4.155 13 C -0.126 4.126 14 C -0.037 4.037 15 C 0.010 3.990 16 C -0.550 4.550 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.058 4.058 27 C 0.032 3.968 28 H 0.095 0.905 29 O -0.359 6.359 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.255 0.745 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.102 0.898 44 H 0.125 0.875 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -25.635 12.617 1.665 28.620 hybrid contribution 1.041 -0.310 0.683 1.283 sum -24.593 12.307 2.348 27.601 Atomic orbital electron populations 1.21759 0.92933 1.02450 1.02765 1.22253 0.97006 1.00292 0.92098 0.88440 1.22203 0.87176 0.94791 0.97015 1.48006 1.29332 1.43035 1.12065 1.19774 0.83490 0.80069 0.85855 1.90784 1.69973 1.63080 1.15542 1.19930 0.83742 0.81155 0.86534 1.90745 1.69275 1.62091 1.15291 1.43022 1.23635 1.44367 1.16858 1.17498 0.87746 0.93493 1.00865 1.20779 0.99135 0.92980 1.02608 1.20921 0.94047 1.00389 0.97254 1.20782 0.95858 0.93557 0.93503 1.18379 0.88220 0.96099 0.96332 1.21093 0.91482 1.32195 1.10181 0.92365 1.25021 0.98991 0.95070 0.95309 1.69968 1.23128 1.35020 1.25132 0.86478 0.82482 0.78222 0.80529 1.19662 1.20942 1.20942 1.20996 0.95596 0.95547 1.00492 1.20971 0.94618 0.99746 0.98016 1.23480 0.98192 1.03674 0.80503 1.23122 0.94519 0.92845 0.86294 0.90468 1.86498 1.88309 1.39348 1.21709 0.91839 0.91431 0.92240 0.90271 0.90291 0.74549 0.86453 0.85714 0.95193 0.95183 0.92871 0.85845 0.85844 0.89753 0.87486 0.76609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 9.13 37.16 0.34 -0.32 16 2 C -0.10 -0.60 3.28 -88.79 -0.29 -0.89 16 3 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.11 0.83 6.46 -3.07 -0.02 0.81 16 5 N -0.59 -5.82 3.32 -170.93 -0.57 -6.39 16 6 C 0.53 6.43 7.91 -11.63 -0.09 6.33 16 7 O -0.52 -7.16 16.81 5.48 0.09 -7.07 16 8 C 0.50 6.79 7.59 -11.63 -0.09 6.71 16 9 O -0.50 -7.41 11.45 5.47 0.06 -7.34 16 10 N -0.63 -8.52 5.32 -10.30 -0.05 -8.57 16 11 C 0.10 1.55 6.28 -83.75 -0.53 1.02 16 12 C -0.13 -2.16 9.96 -39.38 -0.39 -2.55 16 13 C -0.11 -2.01 9.69 -39.61 -0.38 -2.40 16 14 C -0.04 -0.78 5.07 -104.58 -0.53 -1.31 16 15 C 0.05 1.17 5.10 -29.04 -0.15 1.03 16 16 C -0.51 -14.10 9.09 -34.44 -0.31 -14.42 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 20 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.11 -2.11 9.69 -39.61 -0.38 -2.49 16 25 C -0.11 -2.00 8.65 -39.38 -0.34 -2.34 16 26 C 0.06 0.55 5.81 -2.41 -0.01 0.54 16 27 C 0.09 0.60 3.89 -24.47 -0.10 0.51 16 28 H 0.08 0.44 8.04 -51.93 -0.42 0.03 16 29 O -0.55 -3.65 13.47 -35.23 -0.47 -4.12 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.26 8.13 -51.93 -0.42 -0.16 16 33 H 0.08 0.56 7.82 -51.93 -0.41 0.16 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.42 4.76 8.29 -40.82 -0.34 4.42 16 36 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 37 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 38 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 42 H 0.12 2.09 6.42 -52.49 -0.34 1.75 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.11 1.02 6.14 -51.93 -0.32 0.71 16 45 H 0.39 1.15 9.12 45.56 0.42 1.56 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -32.67 378.66 -8.48 -41.15 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.59 Total: 3.95 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -3.38 Total: -8.27 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.11 Total: -40.35 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.32 Total: -18.53 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.67 -8.48 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262698071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.244 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds