Wall clock time and date at job start Tue Mar 31 2020 17:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.64095 * 2 1 4 4 C 1.54320 * 110.72019 * 123.14389 * 2 1 3 5 5 N 1.47013 * 107.27175 * 140.55649 * 4 2 1 6 6 C 1.34778 * 125.64795 * 181.02007 * 5 4 2 7 7 O 1.21364 * 120.00287 * 0.02562 * 6 5 4 8 8 C 1.49352 * 120.00196 * 179.97438 * 6 5 4 9 9 O 1.21382 * 120.00111 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00196 * 179.97438 * 8 6 5 11 11 C 1.39729 * 119.99940 * 185.27879 * 10 8 6 12 12 C 1.38927 * 120.07337 * 213.06072 * 11 10 8 13 13 C 1.38097 * 119.92044 * 179.72110 * 12 11 10 14 14 C 1.38301 * 120.07673 * 0.55490 * 13 12 11 15 15 C 1.50700 * 119.92351 * 179.69870 * 14 13 12 16 16 C 1.50699 * 109.47008 * 270.01982 * 15 14 13 17 17 H 1.07999 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99797 * 179.97438 * 16 15 14 19 19 N 1.31523 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00220 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47112 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47417 * 119.99798 * 20 18 16 23 23 H 1.48499 * 109.47153 * 240.00320 * 20 18 16 24 24 C 1.38289 * 120.15133 * 359.71816 * 14 13 12 25 25 C 1.38103 * 120.07413 * 0.02562 * 24 14 13 26 26 C 1.47423 * 108.70598 * 1.28945 * 5 4 2 27 27 C 1.55125 * 104.71759 * 335.54986 * 26 5 4 28 28 H 1.09003 * 111.19683 * 279.19558 * 27 26 5 29 29 O 1.42904 * 110.94043 * 155.29263 * 27 26 5 30 30 H 1.09000 * 109.47128 * 298.31203 * 1 2 3 31 31 H 1.09002 * 109.47384 * 58.30948 * 1 2 3 32 32 H 1.08995 * 109.47142 * 178.30766 * 1 2 3 33 33 H 1.09001 * 109.88377 * 21.13555 * 4 2 1 34 34 H 1.09005 * 110.01131 * 260.04748 * 4 2 1 35 35 H 0.96997 * 120.00109 * 5.27771 * 10 8 6 36 36 H 1.08004 * 120.04089 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.96492 * 180.27618 * 13 12 11 38 38 H 1.09005 * 109.46845 * 30.02151 * 15 14 13 39 39 H 1.08995 * 109.46890 * 150.02057 * 15 14 13 40 40 H 0.96998 * 120.00000 * 180.02562 * 19 18 16 41 41 H 1.07994 * 119.96390 * 179.97438 * 24 14 13 42 42 H 1.08002 * 120.03382 * 179.97438 * 25 24 14 43 43 H 1.08999 * 110.37258 * 94.48060 * 26 5 4 44 44 H 1.09004 * 110.36728 * 216.80737 * 26 5 4 45 45 H 0.96697 * 114.00058 * 67.95548 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2444 -1.5494 0.7416 6 6 3.9922 -2.3810 1.4938 7 8 3.7190 -2.5520 2.6638 8 6 5.1566 -3.0930 0.8871 9 8 5.4297 -2.9224 -0.2832 10 7 5.9047 -3.9242 1.6394 11 6 7.0574 -4.5043 1.1037 12 6 7.4431 -5.7793 1.4985 13 6 8.5798 -6.3520 0.9627 14 6 9.3402 -5.6533 0.0427 15 6 10.5837 -6.2788 -0.5347 16 6 11.7681 -5.9333 0.3307 17 1 11.6338 -5.3222 1.2110 18 6 13.0231 -6.3982 -0.0009 19 7 13.1866 -7.1429 -1.0726 20 14 14.4911 -5.9706 1.0721 21 1 14.0440 -5.1265 2.2092 22 1 15.1042 -7.2189 1.5927 23 1 15.4923 -5.2257 0.2671 24 6 8.9623 -4.3818 -0.3482 25 6 7.8238 -3.8051 0.1797 26 6 3.4666 -1.2466 -0.6840 27 6 2.0790 -0.7975 -1.2124 28 1 1.4451 -1.6560 -1.4347 29 8 2.2171 0.0442 -2.3590 30 1 -0.3633 0.4874 0.9047 31 1 -0.3634 0.5399 -0.8744 32 1 -0.3633 -1.0272 -0.0303 33 1 1.3129 -1.4731 1.5800 34 1 2.3735 -0.1010 1.9998 35 1 5.6429 -4.1196 2.5527 36 1 6.8524 -6.3236 2.2205 37 1 8.8778 -7.3449 1.2657 38 1 10.4629 -7.3616 -0.5699 39 1 10.7471 -5.8985 -1.5430 40 1 14.0694 -7.4702 -1.3056 41 1 9.5585 -3.8387 -1.0665 42 1 7.5295 -2.8119 -0.1258 43 1 4.1947 -0.4427 -0.7922 44 1 3.8031 -2.1382 -1.2132 45 1 2.5571 -0.4103 -3.1419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262698071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:01 Heat of formation + Delta-G solvation = -110.195788 kcal Electronic energy + Delta-G solvation = -27474.193999 eV Core-core repulsion = 23455.699207 eV Total energy + Delta-G solvation = -4018.494793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.29721 -40.89671 -39.64566 -39.12686 -36.86937 -36.31796 -35.01333 -33.82180 -32.31904 -31.84313 -29.82751 -29.02147 -28.04756 -25.96233 -24.67879 -23.92090 -23.51620 -21.96171 -21.38932 -21.03954 -19.32118 -18.65912 -18.50351 -18.43232 -17.85379 -17.25217 -16.89551 -16.69979 -16.02099 -15.96287 -15.77522 -15.20109 -15.11798 -14.84695 -14.63571 -14.53735 -14.37417 -14.20370 -14.18474 -13.75982 -13.57933 -13.30301 -13.21401 -13.07788 -12.83817 -12.63931 -12.51273 -12.42551 -12.11624 -12.04671 -11.67637 -11.54532 -11.45037 -11.28760 -11.11379 -10.61379 -10.58826 -10.01470 -9.81599 -8.98706 -8.18944 -6.32673 -0.08387 0.52293 0.61470 1.00954 1.39839 1.40758 1.53875 1.93735 2.20066 2.40032 2.93284 3.01173 3.11189 3.18945 3.42317 3.48638 3.91810 3.99689 4.07938 4.13588 4.25909 4.34514 4.44101 4.51237 4.53930 4.56962 4.61836 4.65869 4.74746 4.84017 4.88320 4.99256 5.07907 5.19924 5.24077 5.27858 5.35272 5.37292 5.38278 5.53766 5.75401 5.83578 6.00711 6.05415 6.09579 6.21441 6.48105 6.74460 6.78933 6.80377 7.35843 8.89632 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025231 B = 0.002063 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.470167 B =13571.173980 C =14071.976609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.094 0.906 4 C 0.107 3.893 5 N -0.584 5.584 6 C 0.527 3.473 7 O -0.536 6.536 8 C 0.506 3.494 9 O -0.514 6.514 10 N -0.627 5.627 11 C 0.110 3.890 12 C -0.122 4.122 13 C -0.112 4.112 14 C -0.068 4.068 15 C 0.056 3.944 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.278 1.278 24 C -0.116 4.116 25 C -0.116 4.116 26 C 0.064 3.936 27 C 0.100 3.900 28 H 0.090 0.910 29 O -0.564 6.564 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.430 0.570 36 H 0.158 0.842 37 H 0.129 0.871 38 H 0.008 0.992 39 H 0.003 0.997 40 H 0.265 0.735 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.557 13.289 2.994 30.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.113 0.887 4 C -0.014 4.014 5 N -0.318 5.318 6 C 0.310 3.690 7 O -0.414 6.414 8 C 0.288 3.712 9 O -0.389 6.389 10 N -0.274 5.274 11 C 0.018 3.982 12 C -0.141 4.141 13 C -0.130 4.130 14 C -0.069 4.069 15 C 0.019 3.981 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.790 3.210 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.204 1.204 24 C -0.135 4.135 25 C -0.136 4.136 26 C -0.059 4.059 27 C 0.040 3.960 28 H 0.107 0.893 29 O -0.372 6.372 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.270 0.730 36 H 0.175 0.825 37 H 0.147 0.853 38 H 0.027 0.973 39 H 0.021 0.979 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -27.626 13.682 3.151 30.989 hybrid contribution 1.518 -0.567 0.159 1.628 sum -26.108 13.115 3.310 29.404 Atomic orbital electron populations 1.21738 0.91559 1.02941 1.03262 1.22242 0.98010 0.99726 0.91145 0.88736 1.22409 0.86398 0.94875 0.97766 1.48112 1.29223 1.41994 1.12473 1.19434 0.83349 0.80539 0.85690 1.90779 1.70458 1.64065 1.16085 1.20241 0.83948 0.80693 0.86298 1.90751 1.69745 1.62362 1.16042 1.42953 1.22755 1.44227 1.17487 1.17560 0.87889 0.93322 0.99477 1.21042 0.98042 0.92765 1.02290 1.20993 0.94690 1.00567 0.96786 1.20475 0.95625 0.94806 0.95975 1.18115 0.90137 0.94841 0.95028 1.21410 0.92677 1.31990 1.10309 0.92626 1.25923 1.02052 0.94875 0.96624 1.70087 1.24014 1.36091 1.26790 0.85396 0.78658 0.78217 0.78777 1.18940 1.20129 1.20360 1.20935 0.96533 0.95139 1.00900 1.20996 0.94080 1.00089 0.98418 1.23527 0.99603 1.02988 0.79788 1.23082 0.93137 0.93264 0.86488 0.89252 1.86471 1.88373 1.40014 1.22342 0.90875 0.91465 0.91713 0.89421 0.90040 0.73043 0.82487 0.85321 0.97349 0.97878 0.92595 0.86531 0.85213 0.90388 0.88496 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.13 71.98 0.66 -0.29 16 2 C -0.09 -0.93 3.28 -9.61 -0.03 -0.97 16 3 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 4 C 0.11 1.38 6.46 86.73 0.56 1.94 16 5 N -0.58 -10.57 3.32 -813.06 -2.70 -13.28 16 6 C 0.53 12.02 7.91 87.24 0.69 12.71 16 7 O -0.54 -13.82 16.81 -3.29 -0.06 -13.87 16 8 C 0.51 12.79 7.59 87.24 0.66 13.45 16 9 O -0.51 -14.66 11.45 -3.35 -0.04 -14.70 16 10 N -0.63 -15.46 5.32 -304.83 -1.62 -17.08 16 11 C 0.11 3.36 6.28 38.21 0.24 3.60 16 12 C -0.12 -3.61 9.96 22.40 0.22 -3.39 16 13 C -0.11 -4.14 9.69 22.25 0.22 -3.92 16 14 C -0.07 -2.99 5.07 -19.84 -0.10 -3.09 16 15 C 0.06 2.96 5.10 29.10 0.15 3.11 16 16 C -0.53 -29.85 9.09 25.60 0.23 -29.61 16 17 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 18 C 0.00 0.19 5.46 84.65 0.46 0.65 16 19 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 20 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 C -0.12 -4.67 9.69 22.25 0.22 -4.45 16 25 C -0.12 -4.01 8.65 22.40 0.19 -3.82 16 26 C 0.06 1.01 5.81 86.93 0.51 1.51 16 27 C 0.10 1.11 3.89 32.06 0.12 1.24 16 28 H 0.09 0.81 8.04 -2.39 -0.02 0.79 16 29 O -0.56 -6.40 13.47 -148.98 -2.01 -8.41 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.39 8.13 -2.39 -0.02 0.37 16 33 H 0.09 1.03 7.82 -2.39 -0.02 1.01 16 34 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.43 8.61 8.29 -92.71 -0.77 7.84 16 36 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 38 H 0.01 0.46 8.08 -2.38 -0.02 0.44 16 39 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 40 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.13 4.31 6.42 -2.91 -0.02 4.29 16 43 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.10 1.76 6.14 -2.39 -0.01 1.75 16 45 H 0.40 1.72 9.12 -74.06 -0.68 1.04 16 Total: -1.00 -71.00 378.66 0.47 -70.53 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.41 Total: 17.43 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 5.00 Total: -11.32 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -4.04 Total: -85.91 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -2.10 Total: -36.98 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.00 0.47 -70.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262698071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.664 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds