Wall clock time and date at job start Tue Mar 31 2020 17:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 108.59293 * 2 1 4 4 C 1.47683 * 108.64389 * 118.00722 * 2 1 3 5 5 C 1.54874 * 109.67779 * 181.74748 * 4 2 1 6 6 N 1.44466 * 109.32914 * 290.10255 * 5 4 2 7 7 C 1.34778 * 118.51135 * 268.93775 * 6 5 4 8 8 O 1.21358 * 120.00111 * 186.18000 * 7 6 5 9 9 C 1.49362 * 119.99830 * 6.18279 * 7 6 5 10 10 O 1.21372 * 120.00159 * 6.06424 * 9 7 6 11 11 N 1.34772 * 119.99668 * 186.05866 * 9 7 6 12 12 C 1.39739 * 120.00172 * 184.70378 * 11 9 7 13 13 C 1.39341 * 119.95563 * 144.88761 * 12 11 9 14 14 C 1.38470 * 120.42429 * 180.02562 * 13 12 11 15 15 C 1.37699 * 120.32627 * 0.02562 * 14 13 12 16 16 C 1.40748 * 119.90031 * 359.97438 * 15 14 13 17 17 C 1.41405 * 120.20978 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00095 * 34.85243 * 17 16 15 19 19 C 1.39935 * 120.00127 * 214.85438 * 17 16 15 20 20 N 1.30834 * 119.99640 * 355.32507 * 19 17 16 21 21 Si 1.86802 * 119.99955 * 175.32153 * 19 17 16 22 22 H 1.48497 * 109.46851 * 90.00132 * 21 19 17 23 23 H 1.48498 * 109.46908 * 209.99797 * 21 19 17 24 24 H 1.48496 * 109.47181 * 330.00283 * 21 19 17 25 25 C 1.38307 * 119.95146 * 324.61383 * 12 11 9 26 26 C 1.48179 * 122.97352 * 89.20841 * 6 5 4 27 27 C 1.54663 * 110.49173 * 318.38565 * 26 6 5 28 28 O 1.40529 * 110.01268 * 320.89453 * 27 26 6 29 29 H 1.09000 * 109.47022 * 301.98980 * 1 2 3 30 30 H 1.09003 * 109.47269 * 61.99532 * 1 2 3 31 31 H 1.09004 * 109.46905 * 181.98934 * 1 2 3 32 32 H 1.08996 * 109.43740 * 61.68872 * 4 2 1 33 33 H 1.09001 * 109.40317 * 301.78997 * 4 2 1 34 34 H 1.08999 * 109.50034 * 170.14561 * 5 4 2 35 35 H 1.09004 * 109.49998 * 50.05412 * 5 4 2 36 36 H 0.97004 * 119.99940 * 4.42982 * 11 9 7 37 37 H 1.07999 * 119.79233 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.83835 * 180.02562 * 14 13 12 39 39 H 1.08004 * 120.04611 * 180.02562 * 15 14 13 40 40 H 0.96998 * 119.99161 * 180.02562 * 20 19 17 41 41 H 1.08008 * 120.16124 * 359.97438 * 25 12 11 42 42 H 1.09007 * 109.22910 * 78.81658 * 26 6 5 43 43 H 1.08999 * 109.22856 * 198.18202 * 26 6 5 44 44 H 1.09002 * 109.41330 * 200.68378 * 27 26 6 45 45 H 1.08994 * 109.25022 * 81.00804 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8776 1.0331 0.0000 4 6 2.0022 -0.6571 1.2355 5 6 3.5500 -0.6311 1.2812 6 7 4.0733 -1.5227 0.2721 7 6 4.3186 -2.8040 0.6105 8 8 4.8619 -3.5471 -0.1804 9 6 3.9218 -3.3095 1.9588 10 8 3.2814 -2.6012 2.7081 11 7 4.2748 -4.5520 2.3433 12 6 3.8211 -5.0613 3.5629 13 6 3.5172 -6.4160 3.6813 14 6 3.0665 -6.9310 4.8851 15 6 2.9130 -6.1089 5.9791 16 6 3.2160 -4.7384 5.8748 17 6 3.0614 -3.8883 6.9942 18 1 3.2666 -4.2603 7.9872 19 6 2.6425 -2.5652 6.8155 20 7 2.4820 -2.0873 5.6081 21 14 2.3122 -1.4813 8.3006 22 1 3.5598 -0.7729 8.6835 23 1 1.2618 -0.4871 7.9640 24 1 1.8526 -2.3224 9.4349 25 6 3.6798 -4.2211 4.6524 26 6 4.3579 -1.0908 -1.1165 27 6 3.2325 -0.1667 -1.6375 28 8 1.9832 -0.6333 -1.1942 29 1 -0.3633 0.5444 0.8716 30 1 -0.3634 0.4825 -0.9074 31 1 -0.3633 -1.0271 0.0357 32 1 1.6562 -1.6906 1.2515 33 1 1.6047 -0.1280 2.1016 34 1 3.8904 -0.9550 2.2647 35 1 3.9027 0.3823 1.0893 36 1 4.8405 -5.0943 1.7716 37 1 3.6331 -7.0685 2.8285 38 1 2.8341 -7.9825 4.9664 39 1 2.5615 -6.5154 6.9159 40 1 2.1920 -1.1700 5.4843 41 1 3.9197 -3.1718 4.5632 42 1 5.3067 -0.5545 -1.1383 43 1 4.4279 -1.9690 -1.7583 44 1 3.2487 -0.1552 -2.7274 45 1 3.3952 0.8439 -1.2633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262741948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:55 Heat of formation + Delta-G solvation = -66.909254 kcal Electronic energy + Delta-G solvation = -29704.167522 eV Core-core repulsion = 25687.549774 eV Total energy + Delta-G solvation = -4016.617748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.89015 -39.36284 -38.29199 -37.05358 -35.60709 -34.13307 -33.92747 -33.06500 -29.59085 -29.53352 -28.83416 -28.40956 -25.27648 -24.78523 -24.19573 -22.18939 -21.37221 -21.08830 -20.18808 -19.21924 -17.88226 -17.43058 -16.88759 -16.49518 -15.97209 -15.56365 -15.44036 -15.10726 -14.82353 -14.63500 -14.41780 -14.05496 -13.66218 -13.33426 -13.18465 -13.12795 -12.87045 -12.69409 -12.37336 -12.21744 -11.93776 -11.73798 -11.65219 -11.53385 -11.17617 -11.12343 -11.00202 -10.86358 -10.71190 -10.57036 -10.51795 -9.92817 -9.80202 -9.64687 -9.13922 -9.08660 -8.69463 -8.57212 -7.25720 -6.99611 -6.44774 -4.33389 1.75885 2.58659 2.79632 3.01011 3.12308 3.14201 3.22831 3.62577 3.69387 3.90239 4.02682 4.64229 4.69267 4.75711 4.81954 4.92737 5.01287 5.13736 5.24073 5.26816 5.39227 5.60895 5.64881 5.65848 5.71779 5.79516 5.85671 6.11946 6.12394 6.18812 6.41299 6.42841 6.57753 6.68712 6.93880 6.94549 7.13094 7.17804 7.23079 7.36019 7.51838 7.77283 7.84135 7.92586 8.10324 8.22494 8.40812 8.53297 8.79110 8.99158 8.99703 10.38055 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.004385 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.570148 B = 6383.961813 C = 7981.015523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.085 3.915 3 H 0.052 0.948 4 C -0.150 4.150 5 C 0.096 3.904 6 N -0.576 5.576 7 C 0.507 3.493 8 O -0.532 6.532 9 C 0.482 3.518 10 O -0.451 6.451 11 N -0.639 5.639 12 C 0.129 3.871 13 C -0.249 4.249 14 C -0.088 4.088 15 C -0.224 4.224 16 C 0.114 3.886 17 C -0.468 4.468 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.778 5.778 21 Si 0.908 3.092 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.143 4.143 26 C 0.081 3.919 27 C 0.053 3.947 28 O -0.365 6.365 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.063 0.937 36 H 0.406 0.594 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.276 0.724 41 H 0.152 0.848 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.024 7.868 -11.535 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.028 3.972 3 H 0.070 0.930 4 C -0.188 4.188 5 C -0.027 4.027 6 N -0.309 5.309 7 C 0.290 3.710 8 O -0.409 6.409 9 C 0.262 3.738 10 O -0.323 6.323 11 N -0.284 5.284 12 C 0.037 3.963 13 C -0.271 4.271 14 C -0.107 4.107 15 C -0.244 4.244 16 C 0.111 3.889 17 C -0.499 4.499 18 H 0.092 0.908 19 C -0.148 4.148 20 N -0.403 5.403 21 Si 0.733 3.267 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.164 4.164 26 C -0.041 4.041 27 C -0.026 4.026 28 O -0.283 6.283 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.241 0.759 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.169 0.831 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.637 8.152 -11.671 14.251 hybrid contribution 0.132 0.412 0.365 0.566 sum 0.769 8.564 -11.307 14.205 Atomic orbital electron populations 1.21913 0.93756 1.03099 1.02011 1.21240 0.95321 0.94995 0.85638 0.92972 1.21840 0.95927 1.03807 0.97265 1.22198 0.94024 0.92836 0.93640 1.47581 1.62668 1.09519 1.11159 1.20571 0.79228 0.82581 0.88585 1.90689 1.41532 1.56140 1.52570 1.19990 0.82747 0.83779 0.87257 1.90919 1.35622 1.53399 1.52335 1.43052 1.49778 1.15087 1.20530 1.17719 1.01538 0.93071 0.83957 1.20141 1.15240 0.93572 0.98116 1.20317 0.99853 0.97369 0.93165 1.21164 1.10283 0.95325 0.97640 1.17540 0.87682 0.90850 0.92863 1.19445 1.41304 0.95018 0.94098 0.90773 1.25887 0.94012 0.98127 0.96794 1.69863 1.33773 1.15637 1.21058 0.86322 0.78589 0.79688 0.82081 1.19736 1.20414 1.18912 1.21835 1.02566 1.01068 0.90950 1.22837 0.97989 1.00805 0.82470 1.22868 0.83868 0.96154 0.99673 1.87499 1.34191 1.65216 1.41376 0.91114 0.92371 0.91771 0.90004 0.89115 0.85720 0.91834 0.75885 0.89095 0.88959 0.88840 0.91253 0.83063 0.90833 0.88649 0.88732 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.42 37.16 0.35 -1.29 16 2 C 0.09 1.01 2.64 -29.30 -0.08 0.93 16 3 H 0.05 0.52 7.28 -51.93 -0.38 0.14 16 4 C -0.15 -2.09 4.45 -28.31 -0.13 -2.22 16 5 C 0.10 1.32 4.98 -4.14 -0.02 1.30 16 6 N -0.58 -8.33 2.55 -172.24 -0.44 -8.76 16 7 C 0.51 8.80 7.67 -11.63 -0.09 8.71 16 8 O -0.53 -9.84 15.84 5.49 0.09 -9.75 16 9 C 0.48 9.43 7.49 -11.63 -0.09 9.34 16 10 O -0.45 -9.60 9.12 5.48 0.05 -9.55 16 11 N -0.64 -12.70 5.31 -10.34 -0.05 -12.76 16 12 C 0.13 2.98 6.29 -83.82 -0.53 2.45 16 13 C -0.25 -5.49 9.97 -39.09 -0.39 -5.88 16 14 C -0.09 -1.95 10.02 -39.69 -0.40 -2.35 16 15 C -0.22 -5.45 9.79 -38.83 -0.38 -5.83 16 16 C 0.11 3.01 5.55 -106.85 -0.59 2.41 16 17 C -0.47 -12.35 9.04 -37.74 -0.34 -12.69 16 18 H 0.07 1.89 7.85 -52.49 -0.41 1.47 16 19 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 20 N -0.78 -19.73 10.54 55.55 0.59 -19.15 16 21 Si 0.91 18.78 29.56 -169.99 -5.03 13.76 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 25 C -0.14 -3.68 7.31 -38.66 -0.28 -3.96 16 26 C 0.08 0.93 6.55 -2.24 -0.01 0.91 16 27 C 0.05 0.51 6.50 38.03 0.25 0.76 16 28 O -0.36 -4.69 9.82 -34.10 -0.34 -5.03 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.42 7.30 -51.93 -0.38 1.04 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.13 2.05 5.33 -51.94 -0.28 1.78 16 35 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.41 7.12 8.32 -40.82 -0.34 6.78 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 40 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 41 H 0.15 4.07 4.34 -52.48 -0.23 3.84 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 1.20 7.08 -51.93 -0.37 0.84 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.44 7.21 -51.93 -0.37 0.07 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -29.49 361.26 -8.62 -38.12 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -6.11 Total: 13.45 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.82 Total: -5.77 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.09 Total: -40.67 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.20 Total: -24.32 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.49 -8.62 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262741948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.790 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds