Wall clock time and date at job start Tue Mar 31 2020 17:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 108.59293 * 2 1 4 4 C 1.47683 * 108.64389 * 118.00722 * 2 1 3 5 5 C 1.54874 * 109.67779 * 181.74748 * 4 2 1 6 6 N 1.44466 * 109.32914 * 290.10255 * 5 4 2 7 7 C 1.34778 * 118.51135 * 268.93775 * 6 5 4 8 8 O 1.21358 * 120.00111 * 186.18000 * 7 6 5 9 9 C 1.49362 * 119.99830 * 6.18279 * 7 6 5 10 10 O 1.21372 * 120.00159 * 6.06424 * 9 7 6 11 11 N 1.34772 * 119.99668 * 186.05866 * 9 7 6 12 12 C 1.39739 * 120.00172 * 184.70378 * 11 9 7 13 13 C 1.39341 * 119.95563 * 144.88761 * 12 11 9 14 14 C 1.38470 * 120.42429 * 180.02562 * 13 12 11 15 15 C 1.37699 * 120.32627 * 0.02562 * 14 13 12 16 16 C 1.40748 * 119.90031 * 359.97438 * 15 14 13 17 17 C 1.41405 * 120.20978 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00095 * 34.85243 * 17 16 15 19 19 C 1.39935 * 120.00127 * 214.85438 * 17 16 15 20 20 N 1.30834 * 119.99640 * 355.32507 * 19 17 16 21 21 Si 1.86802 * 119.99955 * 175.32153 * 19 17 16 22 22 H 1.48497 * 109.46851 * 90.00132 * 21 19 17 23 23 H 1.48498 * 109.46908 * 209.99797 * 21 19 17 24 24 H 1.48496 * 109.47181 * 330.00283 * 21 19 17 25 25 C 1.38307 * 119.95146 * 324.61383 * 12 11 9 26 26 C 1.48179 * 122.97352 * 89.20841 * 6 5 4 27 27 C 1.54663 * 110.49173 * 318.38565 * 26 6 5 28 28 O 1.40529 * 110.01268 * 320.89453 * 27 26 6 29 29 H 1.09000 * 109.47022 * 301.98980 * 1 2 3 30 30 H 1.09003 * 109.47269 * 61.99532 * 1 2 3 31 31 H 1.09004 * 109.46905 * 181.98934 * 1 2 3 32 32 H 1.08996 * 109.43740 * 61.68872 * 4 2 1 33 33 H 1.09001 * 109.40317 * 301.78997 * 4 2 1 34 34 H 1.08999 * 109.50034 * 170.14561 * 5 4 2 35 35 H 1.09004 * 109.49998 * 50.05412 * 5 4 2 36 36 H 0.97004 * 119.99940 * 4.42982 * 11 9 7 37 37 H 1.07999 * 119.79233 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.83835 * 180.02562 * 14 13 12 39 39 H 1.08004 * 120.04611 * 180.02562 * 15 14 13 40 40 H 0.96998 * 119.99161 * 180.02562 * 20 19 17 41 41 H 1.08008 * 120.16124 * 359.97438 * 25 12 11 42 42 H 1.09007 * 109.22910 * 78.81658 * 26 6 5 43 43 H 1.08999 * 109.22856 * 198.18202 * 26 6 5 44 44 H 1.09002 * 109.41330 * 200.68378 * 27 26 6 45 45 H 1.08994 * 109.25022 * 81.00804 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8776 1.0331 0.0000 4 6 2.0022 -0.6571 1.2355 5 6 3.5500 -0.6311 1.2812 6 7 4.0733 -1.5227 0.2721 7 6 4.3186 -2.8040 0.6105 8 8 4.8619 -3.5471 -0.1804 9 6 3.9218 -3.3095 1.9588 10 8 3.2814 -2.6012 2.7081 11 7 4.2748 -4.5520 2.3433 12 6 3.8211 -5.0613 3.5629 13 6 3.5172 -6.4160 3.6813 14 6 3.0665 -6.9310 4.8851 15 6 2.9130 -6.1089 5.9791 16 6 3.2160 -4.7384 5.8748 17 6 3.0614 -3.8883 6.9942 18 1 3.2666 -4.2603 7.9872 19 6 2.6425 -2.5652 6.8155 20 7 2.4820 -2.0873 5.6081 21 14 2.3122 -1.4813 8.3006 22 1 3.5598 -0.7729 8.6835 23 1 1.2618 -0.4871 7.9640 24 1 1.8526 -2.3224 9.4349 25 6 3.6798 -4.2211 4.6524 26 6 4.3579 -1.0908 -1.1165 27 6 3.2325 -0.1667 -1.6375 28 8 1.9832 -0.6333 -1.1942 29 1 -0.3633 0.5444 0.8716 30 1 -0.3634 0.4825 -0.9074 31 1 -0.3633 -1.0271 0.0357 32 1 1.6562 -1.6906 1.2515 33 1 1.6047 -0.1280 2.1016 34 1 3.8904 -0.9550 2.2647 35 1 3.9027 0.3823 1.0893 36 1 4.8405 -5.0943 1.7716 37 1 3.6331 -7.0685 2.8285 38 1 2.8341 -7.9825 4.9664 39 1 2.5615 -6.5154 6.9159 40 1 2.1920 -1.1700 5.4843 41 1 3.9197 -3.1718 4.5632 42 1 5.3067 -0.5545 -1.1383 43 1 4.4279 -1.9690 -1.7583 44 1 3.2487 -0.1552 -2.7274 45 1 3.3952 0.8439 -1.2633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262741948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:54 Heat of formation + Delta-G solvation = -84.916448 kcal Electronic energy + Delta-G solvation = -29704.948372 eV Core-core repulsion = 25687.549774 eV Total energy + Delta-G solvation = -4017.398598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.24048 -40.63845 -39.65674 -38.74878 -36.91167 -35.79281 -34.90041 -34.82828 -31.40634 -30.67173 -30.20285 -29.75120 -27.16802 -26.14998 -25.21407 -23.60258 -22.81473 -22.29427 -21.78642 -20.70088 -19.50408 -18.73899 -18.26736 -17.69419 -17.52617 -17.06067 -16.59343 -16.45579 -16.36911 -16.17756 -15.79680 -15.38388 -14.84863 -14.82378 -14.57713 -14.36710 -14.26852 -14.04524 -13.99473 -13.49410 -13.17820 -13.04469 -12.89083 -12.80381 -12.72346 -12.65332 -12.56595 -12.31667 -12.20200 -11.77496 -11.71327 -11.57134 -11.54741 -10.99106 -10.87267 -10.57045 -10.14710 -9.82291 -9.15141 -8.80475 -8.29517 -6.30258 0.26512 0.98914 1.15705 1.34636 1.41668 1.50285 1.56270 2.18835 2.28697 2.46182 2.85666 2.89165 3.34114 3.73596 3.74791 3.80531 3.95522 4.12953 4.23694 4.33819 4.37476 4.48567 4.58308 4.64405 4.68190 4.72733 4.80194 4.83160 4.86301 4.90520 5.01691 5.15554 5.17757 5.23540 5.27433 5.36161 5.41822 5.48042 5.73696 5.90105 5.94524 6.00353 6.22158 6.38666 6.41879 6.47553 6.67311 6.77262 7.05517 7.08747 7.13834 8.53080 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.004385 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.570148 B = 6383.961813 C = 7981.015523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.085 3.915 3 H 0.083 0.917 4 C -0.141 4.141 5 C 0.096 3.904 6 N -0.565 5.565 7 C 0.508 3.492 8 O -0.548 6.548 9 C 0.474 3.526 10 O -0.469 6.469 11 N -0.637 5.637 12 C 0.129 3.871 13 C -0.248 4.248 14 C -0.085 4.085 15 C -0.243 4.243 16 C 0.082 3.918 17 C -0.505 4.505 18 H 0.071 0.929 19 C 0.028 3.972 20 N -0.801 5.801 21 Si 0.979 3.021 22 H -0.265 1.265 23 H -0.270 1.270 24 H -0.264 1.264 25 C -0.168 4.168 26 C 0.075 3.925 27 C 0.051 3.949 28 O -0.387 6.387 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.417 0.583 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.100 0.900 40 H 0.280 0.720 41 H 0.134 0.866 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 9.329 -12.968 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.028 3.972 3 H 0.101 0.899 4 C -0.180 4.180 5 C -0.026 4.026 6 N -0.297 5.297 7 C 0.291 3.709 8 O -0.427 6.427 9 C 0.255 3.745 10 O -0.341 6.341 11 N -0.284 5.284 12 C 0.036 3.964 13 C -0.269 4.269 14 C -0.104 4.104 15 C -0.262 4.262 16 C 0.079 3.921 17 C -0.536 4.536 18 H 0.089 0.911 19 C -0.187 4.187 20 N -0.427 5.427 21 Si 0.801 3.199 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.189 1.189 25 C -0.190 4.190 26 C -0.045 4.045 27 C -0.027 4.027 28 O -0.306 6.306 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.254 0.746 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.151 0.849 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.138 0.862 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.730 9.625 -13.143 16.307 hybrid contribution 0.132 -0.085 0.708 0.725 sum 0.862 9.540 -12.435 15.697 Atomic orbital electron populations 1.21906 0.93464 1.01971 1.03256 1.21257 0.95665 0.95963 0.84294 0.89898 1.21746 0.95930 1.01455 0.98876 1.22155 0.93945 0.94292 0.92216 1.47710 1.61033 1.08308 1.12647 1.20117 0.79805 0.83722 0.87305 1.90677 1.42739 1.56777 1.52474 1.20553 0.82301 0.83405 0.88211 1.90933 1.36125 1.53796 1.53262 1.43007 1.50086 1.15589 1.19755 1.17850 1.00623 0.93513 0.84413 1.20542 1.13755 0.93413 0.99154 1.20708 0.98396 0.98945 0.92304 1.21369 1.10970 0.94989 0.98910 1.17910 0.88554 0.92137 0.93474 1.19676 1.43418 0.96432 0.94061 0.91129 1.26676 0.93366 0.98914 0.99725 1.69973 1.33883 1.16047 1.22761 0.85252 0.78681 0.77702 0.78279 1.18992 1.19507 1.18861 1.21726 1.04496 1.00770 0.91975 1.23180 1.00351 1.01074 0.79944 1.23114 0.81810 0.96622 1.01154 1.87495 1.35620 1.66096 1.41386 0.90117 0.90869 0.94080 0.94265 0.89222 0.88754 0.87986 0.74561 0.86040 0.85304 0.88183 0.90892 0.84857 0.87986 0.89991 0.86193 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.42 71.98 0.68 -2.40 16 2 C 0.09 1.85 2.64 28.93 0.08 1.92 16 3 H 0.08 1.32 7.28 -2.39 -0.02 1.30 16 4 C -0.14 -3.93 4.45 29.57 0.13 -3.80 16 5 C 0.10 2.58 4.98 87.40 0.44 3.02 16 6 N -0.56 -15.77 2.55 -817.19 -2.08 -17.85 16 7 C 0.51 17.72 7.67 87.24 0.67 18.39 16 8 O -0.55 -20.13 15.84 -3.27 -0.05 -20.18 16 9 C 0.47 19.16 7.49 87.24 0.65 19.81 16 10 O -0.47 -20.95 9.12 -3.31 -0.03 -20.98 16 11 N -0.64 -25.83 5.31 -304.98 -1.62 -27.45 16 12 C 0.13 6.05 6.29 38.16 0.24 6.29 16 13 C -0.25 -10.67 9.97 22.59 0.23 -10.45 16 14 C -0.08 -3.68 10.02 22.20 0.22 -3.46 16 15 C -0.24 -11.98 9.79 22.76 0.22 -11.76 16 16 C 0.08 4.51 5.55 -21.31 -0.12 4.39 16 17 C -0.51 -27.78 9.04 23.46 0.21 -27.56 16 18 H 0.07 3.75 7.85 -2.91 -0.02 3.73 16 19 C 0.03 1.45 5.42 85.25 0.46 1.91 16 20 N -0.80 -42.21 10.54 21.82 0.23 -41.98 16 21 Si 0.98 39.27 29.56 68.60 2.03 41.30 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 23 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 C -0.17 -9.02 7.31 22.86 0.17 -8.85 16 26 C 0.08 1.53 6.55 86.62 0.57 2.09 16 27 C 0.05 0.80 6.50 72.55 0.47 1.27 16 28 O -0.39 -9.10 9.82 -144.94 -1.42 -10.53 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.04 1.42 7.30 -2.39 -0.02 1.40 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.09 3.19 5.33 -2.51 -0.01 3.18 16 35 H 0.10 1.96 8.10 -2.39 -0.02 1.94 16 36 H 0.42 14.66 8.32 -92.71 -0.77 13.89 16 37 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 38 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 39 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 40 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 41 H 0.13 7.58 4.34 -2.91 -0.01 7.56 16 42 H 0.10 1.53 8.14 -2.38 -0.02 1.52 16 43 H 0.08 1.93 7.08 -2.39 -0.02 1.91 16 44 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 0.90 7.21 -2.39 -0.02 0.88 16 Total: -1.00 -67.21 361.26 2.62 -64.59 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: 0.26 Total: 42.25 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.32 Total: -9.16 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -3.47 Total: -87.28 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -1.51 Total: -51.69 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -67.21 2.62 -64.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262741948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.326 kcal (2) G-P(sol) polarization free energy of solvation -67.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds