Wall clock time and date at job start Tue Mar 31 2020 17:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47269 * 2 1 4 4 N 1.46500 * 109.47187 * 120.00244 * 2 1 3 5 5 C 1.34768 * 119.99901 * 273.30183 * 4 2 1 6 6 O 1.21361 * 120.00156 * 0.02562 * 5 4 2 7 7 C 1.49351 * 120.00160 * 179.97438 * 5 4 2 8 8 O 1.21380 * 119.99961 * 0.02562 * 7 5 4 9 9 N 1.34779 * 120.00345 * 180.02562 * 7 5 4 10 10 C 1.39722 * 120.00286 * 174.88807 * 9 7 5 11 11 C 1.39023 * 120.03978 * 326.35075 * 10 9 7 12 12 C 1.38141 * 120.06023 * 180.02562 * 11 10 9 13 13 C 1.38185 * 120.14483 * 359.72163 * 12 11 10 14 14 C 1.38921 * 120.07872 * 0.54945 * 13 12 11 15 15 O 1.35753 * 120.02999 * 179.72130 * 14 13 12 16 16 C 1.34827 * 116.99921 * 173.72261 * 15 14 13 17 17 H 1.08002 * 120.00464 * 4.66740 * 16 15 14 18 18 C 1.38660 * 119.99559 * 184.67289 * 16 15 14 19 19 N 1.31553 * 120.00265 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99774 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46920 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47064 * 120.00036 * 20 18 16 23 23 H 1.48496 * 109.47371 * 240.00171 * 20 18 16 24 24 C 1.38762 * 119.94078 * 359.45402 * 14 13 12 25 25 C 1.53005 * 109.47173 * 240.00175 * 2 1 3 26 26 C 1.52999 * 115.54818 * 302.26092 * 25 2 1 27 27 C 1.52996 * 117.50008 * 156.58650 * 25 2 1 28 28 C 1.53005 * 117.49954 * 87.92662 * 25 2 1 29 29 H 1.09008 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47153 * 299.99730 * 1 2 3 31 31 H 1.09005 * 109.47022 * 59.99926 * 1 2 3 32 32 H 0.96998 * 119.99554 * 93.30498 * 4 2 1 33 33 H 0.97000 * 119.99788 * 354.88567 * 9 7 5 34 34 H 1.07995 * 119.97065 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.92566 * 179.97438 * 12 11 10 36 36 H 1.07993 * 119.96251 * 180.27444 * 13 12 11 37 37 H 0.97000 * 120.00058 * 180.02562 * 19 18 16 38 38 H 1.08002 * 120.07017 * 180.25005 * 24 14 13 39 39 H 1.08995 * 109.47749 * 63.60702 * 26 25 2 40 40 H 1.09007 * 109.46800 * 183.61101 * 26 25 2 41 41 H 1.09000 * 109.47040 * 303.60247 * 26 25 2 42 42 H 1.09001 * 117.49712 * 359.97438 * 27 25 2 43 43 H 1.08999 * 117.50183 * 145.01774 * 27 25 2 44 44 H 1.08993 * 117.49830 * 214.98332 * 28 25 2 45 45 H 1.09004 * 117.49588 * 359.97438 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1796 -0.0105 2.3483 6 8 1.9198 1.1741 2.3952 7 6 2.6769 -0.7146 3.5679 8 8 2.9363 -1.8995 3.5213 9 7 2.8377 -0.0345 4.7204 10 6 3.1999 -0.7126 5.8871 11 6 2.7483 -2.0088 6.1074 12 6 3.1057 -2.6794 7.2610 13 6 3.9175 -2.0668 8.1966 14 6 4.3675 -0.7697 7.9851 15 8 5.1603 -0.1667 8.9076 16 6 5.6680 1.0396 8.5836 17 1 5.3782 1.5169 7.6591 18 6 6.5623 1.6673 9.4373 19 7 6.9150 1.0861 10.5636 20 14 7.2663 3.3382 8.9882 21 1 6.7142 3.7724 7.6797 22 1 6.8984 4.3274 10.0328 23 1 8.7453 3.2435 8.8951 24 6 4.0105 -0.0928 6.8276 25 6 2.0400 -0.7212 -1.2493 26 6 1.5653 -2.1660 -1.4172 27 6 3.4497 -0.3797 -1.7362 28 6 2.2293 0.1122 -2.5184 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.2257 -1.6375 1.1587 33 1 2.7019 0.9257 4.7398 34 1 2.1168 -2.4917 5.3764 35 1 2.7533 -3.6862 7.4301 36 1 4.1987 -2.5954 9.0954 37 1 7.5403 1.5254 11.1609 38 1 4.3626 0.9142 6.6592 39 1 0.4822 -2.1809 -1.5380 40 1 2.0353 -2.6028 -2.2984 41 1 1.8405 -2.7437 -0.5348 42 1 4.0136 0.3592 -1.1668 43 1 4.0388 -1.1841 -2.1765 44 1 2.0159 -0.3690 -3.4729 45 1 1.9900 1.1742 -2.4634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262783431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:35 Heat of formation + Delta-G solvation = -44.186920 kcal Electronic energy + Delta-G solvation = -27580.816614 eV Core-core repulsion = 23565.184181 eV Total energy + Delta-G solvation = -4015.632433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.03028 -39.74340 -38.80912 -38.15542 -36.55347 -35.06114 -34.13748 -32.26580 -30.88592 -29.55354 -28.83191 -28.69866 -25.78696 -25.23642 -23.66663 -22.75756 -21.90803 -21.49245 -20.23394 -19.68619 -18.59316 -18.02450 -17.30800 -16.86965 -16.29988 -15.85334 -15.56017 -15.12660 -15.00886 -14.95505 -14.48231 -14.28369 -14.06110 -13.83903 -13.72512 -13.57861 -13.05549 -13.04862 -12.80742 -12.62382 -12.42040 -12.26860 -11.91410 -11.90004 -11.76004 -11.57596 -11.20155 -11.10941 -11.00005 -10.82296 -10.75144 -10.45097 -10.26182 -9.94124 -9.62240 -9.51038 -9.41614 -8.84177 -7.83317 -7.23803 -6.47420 -4.07196 1.18982 2.06501 2.22924 2.35608 3.10656 3.13002 3.18328 3.18905 3.25320 3.63699 3.94681 4.06490 4.28977 4.36738 4.47318 4.50361 4.53896 4.91254 4.97620 5.05614 5.23419 5.24439 5.25406 5.31599 5.37554 5.50454 5.51271 5.55071 5.61329 5.71086 5.71956 5.89520 5.92584 5.96056 6.03060 6.13258 6.17528 6.52660 6.71190 6.86168 6.97431 7.08651 7.22322 7.36647 7.45312 7.66222 7.72471 7.95874 8.01403 8.98070 9.66531 10.70394 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.002444 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.950525 B =11454.629356 C =12592.593622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.178 3.822 3 H 0.093 0.907 4 N -0.694 5.694 5 C 0.513 3.487 6 O -0.519 6.519 7 C 0.503 3.497 8 O -0.501 6.501 9 N -0.636 5.636 10 C 0.174 3.826 11 C -0.204 4.204 12 C -0.063 4.063 13 C -0.195 4.195 14 C 0.168 3.832 15 O -0.174 6.174 16 C -0.393 4.393 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.250 4.250 25 C -0.144 4.144 26 C -0.117 4.117 27 C -0.169 4.169 28 C -0.162 4.162 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.413 0.587 33 H 0.419 0.581 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.270 0.730 38 H 0.133 0.867 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.087 -3.302 -23.501 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.111 0.889 4 N -0.347 5.347 5 C 0.293 3.707 6 O -0.394 6.394 7 C 0.284 3.716 8 O -0.375 6.375 9 N -0.281 5.281 10 C 0.081 3.919 11 C -0.225 4.225 12 C -0.082 4.082 13 C -0.215 4.215 14 C 0.113 3.887 15 O -0.077 6.077 16 C -0.469 4.469 17 H 0.109 0.891 18 C -0.164 4.164 19 N -0.496 5.496 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.272 4.272 25 C -0.145 4.145 26 C -0.174 4.174 27 C -0.206 4.206 28 C -0.199 4.199 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.250 0.750 33 H 0.256 0.744 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.150 0.850 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.884 -3.289 -23.110 25.755 hybrid contribution 0.452 0.960 -0.294 1.101 sum -10.431 -2.329 -23.404 25.729 Atomic orbital electron populations 1.22160 0.94317 1.02697 1.02819 1.20534 0.94362 0.96370 0.81305 0.88875 1.45797 1.65553 1.14352 1.09026 1.20108 0.78916 0.87047 0.84628 1.90773 1.49293 1.14846 1.84504 1.20065 0.79749 0.87404 0.84355 1.90786 1.47602 1.14830 1.84321 1.43144 1.65604 1.12461 1.06937 1.17393 0.96401 0.92963 0.85151 1.20521 1.07301 0.94914 0.99759 1.20523 0.96302 0.98527 0.92798 1.20297 1.05290 0.93844 1.02042 1.19055 0.90357 0.91388 0.87860 1.84006 1.54740 1.32536 1.36428 1.21346 1.25352 0.92858 1.07358 0.89083 1.25283 0.96110 0.99833 0.95204 1.70042 1.31628 1.38114 1.09775 0.85655 0.78895 0.80166 0.78770 1.19091 1.20105 1.20117 1.20842 1.05974 1.02975 0.97362 1.21676 1.00722 0.97043 0.95042 1.21342 1.01499 0.92505 1.02077 1.23106 0.90430 1.03691 1.03408 1.23036 1.02202 0.99983 0.94713 0.91903 0.91800 0.91172 0.75043 0.74431 0.86324 0.86411 0.86193 0.92017 0.84985 0.91625 0.92014 0.91997 0.88558 0.88391 0.88314 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.20 37.16 0.34 -0.86 16 2 C 0.18 1.48 2.45 -67.93 -0.17 1.32 16 3 H 0.09 0.90 7.49 -51.93 -0.39 0.51 16 4 N -0.69 -6.95 5.03 -54.27 -0.27 -7.22 16 5 C 0.51 6.66 7.87 -11.64 -0.09 6.57 16 6 O -0.52 -7.63 16.12 5.49 0.09 -7.54 16 7 C 0.50 7.63 7.62 -11.63 -0.09 7.54 16 8 O -0.50 -8.40 14.17 5.47 0.08 -8.33 16 9 N -0.64 -10.24 5.32 -10.31 -0.05 -10.29 16 10 C 0.17 3.32 6.27 -83.77 -0.53 2.79 16 11 C -0.20 -3.80 8.65 -39.33 -0.34 -4.14 16 12 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 13 C -0.20 -4.09 9.99 -39.35 -0.39 -4.48 16 14 C 0.17 4.02 6.64 -39.14 -0.26 3.76 16 15 O -0.17 -4.89 9.76 0.05 0.00 -4.89 16 16 C -0.39 -10.85 9.49 30.89 0.29 -10.56 16 17 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.04 13.67 55.48 0.76 -24.28 16 20 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.25 -5.40 9.08 -39.19 -0.36 -5.76 16 25 C -0.14 -0.95 1.79 -154.51 -0.28 -1.22 16 26 C -0.12 -0.66 9.08 37.16 0.34 -0.32 16 27 C -0.17 -1.14 9.95 -26.70 -0.27 -1.40 16 28 C -0.16 -0.92 9.96 -26.69 -0.27 -1.18 16 29 H 0.06 0.42 7.00 -51.92 -0.36 0.06 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.41 3.80 6.89 -40.82 -0.28 3.52 16 33 H 0.42 6.04 8.30 -40.82 -0.34 5.70 16 34 H 0.12 2.10 6.43 -52.49 -0.34 1.76 16 35 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 39 H 0.06 0.33 7.19 -51.93 -0.37 -0.04 16 40 H 0.06 0.31 8.10 -51.92 -0.42 -0.12 16 41 H 0.06 0.36 7.03 -51.93 -0.36 0.00 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -31.89 381.04 -7.19 -39.08 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.95 Total: 10.81 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.55 Total: -8.49 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.43 Total: -41.79 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.17 Total: -20.76 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.89 -7.19 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262783431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.110 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds