Wall clock time and date at job start Tue Mar 31 2020 17:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47269 * 2 1 4 4 N 1.46500 * 109.47187 * 120.00244 * 2 1 3 5 5 C 1.34768 * 119.99901 * 273.30183 * 4 2 1 6 6 O 1.21361 * 120.00156 * 0.02562 * 5 4 2 7 7 C 1.49351 * 120.00160 * 179.97438 * 5 4 2 8 8 O 1.21380 * 119.99961 * 0.02562 * 7 5 4 9 9 N 1.34779 * 120.00345 * 180.02562 * 7 5 4 10 10 C 1.39722 * 120.00286 * 174.88807 * 9 7 5 11 11 C 1.39023 * 120.03978 * 326.35075 * 10 9 7 12 12 C 1.38141 * 120.06023 * 180.02562 * 11 10 9 13 13 C 1.38185 * 120.14483 * 359.72163 * 12 11 10 14 14 C 1.38921 * 120.07872 * 0.54945 * 13 12 11 15 15 O 1.35753 * 120.02999 * 179.72130 * 14 13 12 16 16 C 1.34827 * 116.99921 * 173.72261 * 15 14 13 17 17 H 1.08002 * 120.00464 * 4.66740 * 16 15 14 18 18 C 1.38660 * 119.99559 * 184.67289 * 16 15 14 19 19 N 1.31553 * 120.00265 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99774 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46920 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47064 * 120.00036 * 20 18 16 23 23 H 1.48496 * 109.47371 * 240.00171 * 20 18 16 24 24 C 1.38762 * 119.94078 * 359.45402 * 14 13 12 25 25 C 1.53005 * 109.47173 * 240.00175 * 2 1 3 26 26 C 1.52999 * 115.54818 * 302.26092 * 25 2 1 27 27 C 1.52996 * 117.50008 * 156.58650 * 25 2 1 28 28 C 1.53005 * 117.49954 * 87.92662 * 25 2 1 29 29 H 1.09008 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47153 * 299.99730 * 1 2 3 31 31 H 1.09005 * 109.47022 * 59.99926 * 1 2 3 32 32 H 0.96998 * 119.99554 * 93.30498 * 4 2 1 33 33 H 0.97000 * 119.99788 * 354.88567 * 9 7 5 34 34 H 1.07995 * 119.97065 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.92566 * 179.97438 * 12 11 10 36 36 H 1.07993 * 119.96251 * 180.27444 * 13 12 11 37 37 H 0.97000 * 120.00058 * 180.02562 * 19 18 16 38 38 H 1.08002 * 120.07017 * 180.25005 * 24 14 13 39 39 H 1.08995 * 109.47749 * 63.60702 * 26 25 2 40 40 H 1.09007 * 109.46800 * 183.61101 * 26 25 2 41 41 H 1.09000 * 109.47040 * 303.60247 * 26 25 2 42 42 H 1.09001 * 117.49712 * 359.97438 * 27 25 2 43 43 H 1.08999 * 117.50183 * 145.01774 * 27 25 2 44 44 H 1.08993 * 117.49830 * 214.98332 * 28 25 2 45 45 H 1.09004 * 117.49588 * 359.97438 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1796 -0.0105 2.3483 6 8 1.9198 1.1741 2.3952 7 6 2.6769 -0.7146 3.5679 8 8 2.9363 -1.8995 3.5213 9 7 2.8377 -0.0345 4.7204 10 6 3.1999 -0.7126 5.8871 11 6 2.7483 -2.0088 6.1074 12 6 3.1057 -2.6794 7.2610 13 6 3.9175 -2.0668 8.1966 14 6 4.3675 -0.7697 7.9851 15 8 5.1603 -0.1667 8.9076 16 6 5.6680 1.0396 8.5836 17 1 5.3782 1.5169 7.6591 18 6 6.5623 1.6673 9.4373 19 7 6.9150 1.0861 10.5636 20 14 7.2663 3.3382 8.9882 21 1 6.7142 3.7724 7.6797 22 1 6.8984 4.3274 10.0328 23 1 8.7453 3.2435 8.8951 24 6 4.0105 -0.0928 6.8276 25 6 2.0400 -0.7212 -1.2493 26 6 1.5653 -2.1660 -1.4172 27 6 3.4497 -0.3797 -1.7362 28 6 2.2293 0.1122 -2.5184 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.2257 -1.6375 1.1587 33 1 2.7019 0.9257 4.7398 34 1 2.1168 -2.4917 5.3764 35 1 2.7533 -3.6862 7.4301 36 1 4.1987 -2.5954 9.0954 37 1 7.5403 1.5254 11.1609 38 1 4.3626 0.9142 6.6592 39 1 0.4822 -2.1809 -1.5380 40 1 2.0353 -2.6028 -2.2984 41 1 1.8405 -2.7437 -0.5348 42 1 4.0136 0.3592 -1.1668 43 1 4.0388 -1.1841 -2.1765 44 1 2.0159 -0.3690 -3.4729 45 1 1.9900 1.1742 -2.4634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262783431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:34 Heat of formation + Delta-G solvation = -65.100856 kcal Electronic energy + Delta-G solvation = -27581.723510 eV Core-core repulsion = 23565.184181 eV Total energy + Delta-G solvation = -4016.539330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.21924 -40.97949 -40.15863 -39.13906 -38.19221 -36.17340 -35.32024 -34.24692 -31.64976 -31.13446 -30.37430 -29.25685 -27.44669 -26.62415 -24.58759 -23.57076 -23.24281 -22.82624 -21.43986 -20.69024 -19.78200 -19.63215 -18.84224 -17.97963 -17.23858 -17.10944 -17.01885 -16.70430 -16.13831 -16.00492 -15.74349 -15.57610 -15.50817 -15.13189 -15.06872 -14.60888 -14.27343 -14.19556 -13.70758 -13.60405 -13.39714 -13.35152 -13.18531 -13.03669 -12.80785 -12.74744 -12.56193 -12.42128 -12.36530 -12.11135 -11.79706 -11.47676 -11.38697 -11.28987 -10.89277 -10.76820 -10.64281 -10.35060 -9.44347 -8.95756 -8.48142 -6.16669 -0.07354 0.57821 0.69529 1.12117 1.35392 1.43057 1.52927 1.99081 2.16363 2.39238 2.80272 2.86174 3.12341 3.26772 3.47605 3.49280 3.77848 3.95050 4.01103 4.06616 4.26911 4.28644 4.38190 4.39989 4.56417 4.57893 4.64272 4.78652 4.85185 4.91171 4.93693 4.98503 5.03427 5.04644 5.09419 5.18649 5.19806 5.25321 5.26949 5.30789 5.42985 5.59785 5.63271 5.84468 5.99979 6.11262 6.22973 6.58662 6.78244 6.96517 7.74652 8.74726 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.002444 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.950525 B =11454.629356 C =12592.593622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.175 3.825 3 H 0.080 0.920 4 N -0.677 5.677 5 C 0.519 3.481 6 O -0.538 6.538 7 C 0.507 3.493 8 O -0.515 6.515 9 N -0.635 5.635 10 C 0.178 3.822 11 C -0.194 4.194 12 C -0.048 4.048 13 C -0.206 4.206 14 C 0.134 3.866 15 O -0.223 6.223 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.020 4.020 19 N -0.917 5.917 20 Si 1.016 2.984 21 H -0.253 1.253 22 H -0.267 1.267 23 H -0.269 1.269 24 C -0.257 4.257 25 C -0.145 4.145 26 C -0.117 4.117 27 C -0.180 4.180 28 C -0.150 4.150 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.418 0.582 33 H 0.426 0.574 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.123 0.877 37 H 0.273 0.727 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.556 -3.845 -26.670 29.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.072 3.928 3 H 0.098 0.902 4 N -0.330 5.330 5 C 0.299 3.701 6 O -0.415 6.415 7 C 0.289 3.711 8 O -0.389 6.389 9 N -0.282 5.282 10 C 0.084 3.916 11 C -0.214 4.214 12 C -0.066 4.066 13 C -0.225 4.225 14 C 0.083 3.917 15 O -0.129 6.129 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.218 4.218 19 N -0.555 5.555 20 Si 0.835 3.165 21 H -0.176 1.176 22 H -0.192 1.192 23 H -0.194 1.194 24 C -0.278 4.278 25 C -0.146 4.146 26 C -0.174 4.174 27 C -0.217 4.217 28 C -0.187 4.187 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.257 0.743 33 H 0.265 0.735 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.141 0.859 37 H 0.082 0.918 38 H 0.144 0.856 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.132 0.868 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.399 -3.865 -26.353 29.380 hybrid contribution 0.716 0.918 0.467 1.254 sum -11.682 -2.948 -25.887 28.553 Atomic orbital electron populations 1.22128 0.93271 1.03363 1.02777 1.20691 0.95122 0.95778 0.81182 0.90231 1.45830 1.64011 1.14564 1.08560 1.19671 0.79193 0.86672 0.84607 1.90778 1.50591 1.15483 1.84668 1.20449 0.78861 0.87226 0.84570 1.90770 1.48054 1.15491 1.84632 1.43129 1.65628 1.12933 1.06488 1.17432 0.95326 0.93283 0.85534 1.20893 1.06186 0.94447 0.99901 1.20961 0.94295 1.00005 0.91343 1.20564 1.05842 0.93040 1.03083 1.19594 0.90810 0.92760 0.88535 1.83974 1.57046 1.33335 1.38593 1.21817 1.25833 0.93280 1.07994 0.88170 1.26535 0.96224 1.04102 0.94926 1.70176 1.33355 1.40506 1.11445 0.84564 0.78075 0.74706 0.79106 1.17605 1.19237 1.19426 1.20845 1.06615 1.02891 0.97452 1.21642 1.00596 0.97755 0.94581 1.21365 1.02113 0.91524 1.02357 1.23131 0.90707 1.03881 1.04018 1.23120 1.00690 1.00106 0.94786 0.90850 0.93584 0.89490 0.74348 0.73540 0.84473 0.82135 0.85856 0.91770 0.85552 0.90791 0.91115 0.92350 0.89921 0.87705 0.86772 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.20 71.98 0.66 -1.34 16 2 C 0.18 2.61 2.45 44.99 0.11 2.72 16 3 H 0.08 1.44 7.49 -2.39 -0.02 1.43 16 4 N -0.68 -12.37 5.03 -443.97 -2.23 -14.61 16 5 C 0.52 12.76 7.87 87.24 0.69 13.45 16 6 O -0.54 -15.29 16.12 -3.28 -0.05 -15.34 16 7 C 0.51 14.52 7.62 87.24 0.66 15.19 16 8 O -0.51 -16.10 14.17 -3.34 -0.05 -16.15 16 9 N -0.64 -19.71 5.32 -304.88 -1.62 -21.33 16 10 C 0.18 6.61 6.27 38.20 0.24 6.85 16 11 C -0.19 -6.73 8.65 22.44 0.19 -6.54 16 12 C -0.05 -1.62 10.03 22.23 0.22 -1.40 16 13 C -0.21 -8.61 9.99 22.42 0.22 -8.39 16 14 C 0.13 6.63 6.64 22.56 0.15 6.78 16 15 O -0.22 -13.24 9.76 -22.74 -0.22 -13.46 16 16 C -0.41 -23.80 9.49 67.92 0.64 -23.15 16 17 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 18 C -0.02 -1.12 5.49 84.84 0.47 -0.65 16 19 N -0.92 -55.76 13.67 21.61 0.30 -55.47 16 20 Si 1.02 42.75 29.55 68.60 2.03 44.78 16 21 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 C -0.26 -11.25 9.08 22.52 0.20 -11.04 16 25 C -0.15 -1.57 1.79 -52.18 -0.09 -1.67 16 26 C -0.12 -0.97 9.08 71.98 0.65 -0.32 16 27 C -0.18 -2.11 9.95 30.62 0.30 -1.81 16 28 C -0.15 -1.32 9.96 30.62 0.30 -1.02 16 29 H 0.07 0.78 7.00 -2.38 -0.02 0.77 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.42 6.82 6.89 -92.71 -0.64 6.18 16 33 H 0.43 11.98 8.30 -92.71 -0.77 11.21 16 34 H 0.14 4.35 6.43 -2.91 -0.02 4.33 16 35 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 36 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 37 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.13 5.58 5.64 -2.91 -0.02 5.56 16 39 H 0.07 0.51 7.19 -2.39 -0.02 0.49 16 40 H 0.07 0.49 8.10 -2.38 -0.02 0.47 16 41 H 0.06 0.53 7.03 -2.39 -0.02 0.51 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -71.80 381.04 3.43 -68.37 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.36 Total: 35.54 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.64 Total: -12.34 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -3.56 Total: -91.40 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.32 Total: -44.95 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.80 3.43 -68.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262783431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.270 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds