Wall clock time and date at job start Tue Mar 31 2020 16:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 O 1.21615 * 120.00357 * 46.32710 * 3 2 1 5 5 N 1.34779 * 120.00162 * 226.31784 * 3 2 1 6 6 C 1.47678 * 134.45198 * 180.02562 * 5 3 2 7 7 C 1.53389 * 85.95974 * 155.78971 * 6 5 3 8 8 C 1.47679 * 134.44193 * 0.06590 * 5 3 2 9 9 C 1.52747 * 113.74993 * 137.85400 * 7 6 5 10 10 C 1.53291 * 108.97884 * 184.46103 * 9 7 6 11 11 O 1.42900 * 109.30657 * 304.75776 * 10 9 7 12 12 C 1.42886 * 114.39452 * 63.03506 * 11 10 9 13 13 C 1.53005 * 113.92540 * 268.73589 * 7 6 5 14 14 H 1.08996 * 109.53133 * 55.82056 * 13 7 6 15 15 C 1.50702 * 109.64064 * 295.55512 * 13 7 6 16 16 O 1.21273 * 120.00201 * 325.45133 * 15 13 7 17 17 N 1.34778 * 119.99532 * 145.45029 * 15 13 7 18 18 C 1.47072 * 136.05984 * 4.64976 * 17 15 13 19 19 C 1.53755 * 87.88505 * 152.95729 * 18 17 15 20 20 C 1.50708 * 114.08519 * 139.78002 * 19 18 17 21 21 H 1.08003 * 120.00230 * 266.56083 * 20 19 18 22 22 C 1.37878 * 119.99963 * 86.55915 * 20 19 18 23 23 N 1.31512 * 119.99921 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99775 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47042 * 90.00102 * 24 22 20 26 26 H 1.48502 * 109.46778 * 209.99571 * 24 22 20 27 27 H 1.48495 * 109.47231 * 329.99752 * 24 22 20 28 28 C 1.47067 * 136.05541 * 185.01356 * 17 15 13 29 29 H 4.39223 * 13.43150 * 359.97438 * 4 2 1 30 30 H 1.09003 * 113.79193 * 41.53464 * 6 5 3 31 31 H 1.09000 * 113.90459 * 270.06442 * 6 5 3 32 32 H 1.09004 * 113.79395 * 89.95421 * 8 5 3 33 33 H 1.08996 * 113.80460 * 318.46291 * 8 5 3 34 34 H 1.09002 * 109.56741 * 64.58180 * 9 7 6 35 35 H 1.09000 * 109.57237 * 304.34383 * 9 7 6 36 36 H 1.09002 * 109.49583 * 64.70239 * 10 9 7 37 37 H 1.08996 * 109.50498 * 184.80382 * 10 9 7 38 38 H 1.08999 * 109.49817 * 56.92573 * 12 11 10 39 39 H 1.08998 * 109.50051 * 176.98260 * 12 11 10 40 40 H 1.08994 * 113.46215 * 267.68808 * 18 17 15 41 41 H 1.09003 * 113.46595 * 38.13169 * 18 17 15 42 42 H 1.08995 * 114.39651 * 272.67146 * 19 18 17 43 43 H 0.97006 * 119.99752 * 179.97438 * 23 22 20 44 44 H 1.09003 * 113.46617 * 321.86813 * 28 17 15 45 45 H 1.08994 * 113.46825 * 92.30644 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 8 3.2145 -0.7264 -0.7618 5 7 3.2796 0.8071 0.8441 6 6 4.7095 1.0626 1.1103 7 6 4.2558 2.4306 1.6351 8 6 2.8831 1.7886 1.8738 9 6 4.9628 2.8626 2.9183 10 6 4.3518 4.1818 3.4043 11 8 4.4237 5.1503 2.3560 12 6 3.6732 4.8126 1.1880 13 6 4.2439 3.5304 0.5715 14 1 3.6207 3.2197 -0.2670 15 6 5.6490 3.7842 0.0895 16 8 6.5807 3.6896 0.8600 17 7 5.8701 4.1164 -1.1978 18 6 5.0372 4.4043 -2.3753 19 6 6.1867 5.2780 -2.9039 20 6 6.4247 5.1501 -4.3865 21 1 7.1535 4.4447 -4.7576 22 6 5.7121 5.9336 -5.2693 23 7 4.8243 6.7923 -4.8174 24 14 6.0067 5.7746 -7.1070 25 1 5.0927 4.7472 -7.6678 26 1 5.7466 7.0803 -7.7648 27 1 7.4147 5.3699 -7.3495 28 6 7.0505 4.3440 -2.0450 29 1 -1.0500 -0.0008 -0.0002 30 1 5.3214 1.1179 0.2099 31 1 5.1382 0.4174 1.8772 32 1 2.7655 1.3591 2.8687 33 1 2.0450 2.4205 1.5797 34 1 6.0254 3.0035 2.7199 35 1 4.8327 2.0965 3.6826 36 1 3.3096 4.0204 3.6796 37 1 4.9059 4.5420 4.2710 38 1 2.6298 4.6524 1.4598 39 1 3.7399 5.6254 0.4650 40 1 4.8395 3.5276 -2.9919 41 1 4.1341 4.9679 -2.1408 42 1 6.1637 6.3108 -2.5565 43 1 4.3232 7.3438 -5.4385 44 1 7.8627 4.8563 -1.5291 45 1 7.3834 3.4515 -2.5745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268857352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:24 Heat of formation + Delta-G solvation = 26.930943 kcal Electronic energy + Delta-G solvation = -29471.348731 eV Core-core repulsion = 25458.800199 eV Total energy + Delta-G solvation = -4012.548531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.60568 -39.52788 -38.72375 -37.42604 -36.81081 -33.50424 -32.73153 -32.33456 -31.74327 -29.06868 -28.17222 -26.75983 -25.35918 -24.97452 -23.98758 -23.90954 -22.09907 -20.79122 -19.20494 -18.59400 -17.81602 -17.03358 -16.96068 -16.41418 -16.39855 -16.20729 -15.84812 -15.54303 -15.12788 -14.91597 -14.62122 -14.46756 -14.13557 -13.63798 -13.35820 -12.94368 -12.85027 -12.69214 -12.38135 -12.22497 -12.14999 -11.63013 -11.53065 -11.33142 -11.27901 -11.15659 -11.07184 -10.97301 -10.87650 -10.80533 -10.66503 -10.36382 -10.27978 -9.66646 -9.44714 -9.21173 -9.01082 -8.85946 -8.58250 -7.86012 -6.19229 -4.24489 1.40318 2.01997 2.65784 3.07391 3.24179 3.31567 3.33848 3.38539 3.41965 3.77781 3.87889 4.05848 4.32554 4.34330 4.58955 4.73622 4.84195 4.92428 4.95355 5.02319 5.10992 5.16671 5.24770 5.33453 5.37244 5.44474 5.45525 5.54940 5.59616 5.68496 5.88201 5.90333 6.03327 6.14698 6.25944 6.34517 6.44297 6.56804 6.63334 6.78569 6.93488 7.17450 7.32699 7.54567 7.78812 7.82856 8.17308 8.52047 8.75101 8.79624 9.42529 10.90524 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.003848 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.448600 B = 7273.886760 C = 8709.834554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.222 4.222 3 C 0.647 3.353 4 O -0.519 6.519 5 N -0.634 5.634 6 C 0.126 3.874 7 C -0.072 4.072 8 C 0.109 3.891 9 C -0.147 4.147 10 C 0.066 3.934 11 O -0.368 6.368 12 C 0.077 3.923 13 C -0.115 4.115 14 H 0.097 0.903 15 C 0.546 3.454 16 O -0.549 6.549 17 N -0.643 5.643 18 C 0.096 3.904 19 C 0.037 3.963 20 C -0.517 4.517 21 H 0.063 0.937 22 C 0.069 3.931 23 N -0.886 5.886 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.272 1.272 28 C 0.101 3.899 29 H 0.234 0.766 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.264 0.736 44 H 0.058 0.942 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 -7.808 16.413 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.224 4.224 3 C 0.437 3.563 4 O -0.396 6.396 5 N -0.369 5.369 6 C 0.005 3.995 7 C -0.073 4.073 8 C -0.013 4.013 9 C -0.185 4.185 10 C -0.011 4.011 11 O -0.286 6.286 12 C 0.000 4.000 13 C -0.137 4.137 14 H 0.116 0.884 15 C 0.335 3.665 16 O -0.428 6.428 17 N -0.376 5.376 18 C -0.026 4.026 19 C 0.018 3.982 20 C -0.555 4.555 21 H 0.082 0.918 22 C -0.134 4.134 23 N -0.523 5.523 24 Si 0.722 3.278 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.196 1.196 28 C -0.021 4.021 29 H 0.250 0.750 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.594 -8.129 16.432 20.247 hybrid contribution -0.594 -0.520 -1.175 1.416 sum -9.188 -8.649 15.257 19.799 Atomic orbital electron populations 1.25242 0.95808 0.95052 0.95433 1.21446 0.93243 1.03959 1.03779 1.14375 0.82727 0.78928 0.80306 1.90894 1.68816 1.40051 1.39859 1.49848 1.09452 1.40919 1.36714 1.23241 0.82268 0.93025 1.00999 1.21796 0.95393 0.93676 0.96478 1.23425 0.97851 0.88123 0.91927 1.22294 1.04127 0.97652 0.94425 1.22550 0.99329 0.88810 0.90366 1.88001 1.71602 1.44290 1.24721 1.22483 0.93911 0.95636 0.87975 1.21657 0.96957 0.96774 0.98309 0.88443 1.19472 0.89772 0.76537 0.80715 1.90553 1.45044 1.53547 1.53701 1.50019 1.13779 1.66589 1.07210 1.23692 0.97610 0.99066 0.82242 1.20375 0.89236 0.94188 0.94442 1.20922 1.22770 1.22151 0.89699 0.91840 1.25015 0.94745 0.94451 0.99216 1.69948 1.24112 1.23194 1.35042 0.86546 0.78859 0.77523 0.84848 1.20506 1.21106 1.19649 1.23323 0.89954 0.99379 0.89474 0.74984 0.89485 0.88752 0.88682 0.89612 0.87085 0.90903 0.93647 0.88762 0.92283 0.87834 0.90914 0.92400 0.91262 0.92646 0.92384 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 19.25 29.55 0.57 -0.23 16 2 C -0.22 -2.67 13.34 -38.84 -0.52 -3.19 16 3 C 0.65 9.63 7.88 -14.33 -0.11 9.52 16 4 O -0.52 -9.86 17.81 5.26 0.09 -9.77 16 5 N -0.63 -7.90 3.48 -183.63 -0.64 -8.54 16 6 C 0.13 1.58 7.80 -3.20 -0.02 1.56 16 7 C -0.07 -0.82 0.25 -154.32 -0.04 -0.86 16 8 C 0.11 0.98 7.55 -3.19 -0.02 0.95 16 9 C -0.15 -1.54 4.90 -26.71 -0.13 -1.67 16 10 C 0.07 0.67 6.79 37.31 0.25 0.93 16 11 O -0.37 -5.17 10.41 -35.23 -0.37 -5.53 16 12 C 0.08 1.00 6.17 37.31 0.23 1.23 16 13 C -0.12 -1.62 2.06 -91.62 -0.19 -1.81 16 14 H 0.10 1.41 7.75 -51.93 -0.40 1.01 16 15 C 0.55 10.05 6.14 -10.98 -0.07 9.98 16 16 O -0.55 -11.14 14.76 5.56 0.08 -11.06 16 17 N -0.64 -12.84 3.69 -185.05 -0.68 -13.53 16 18 C 0.10 2.02 7.78 -8.37 -0.07 1.95 16 19 C 0.04 0.86 3.80 -91.12 -0.35 0.51 16 20 C -0.52 -13.20 8.82 -34.44 -0.30 -13.50 16 21 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -23.99 13.26 55.43 0.74 -23.26 16 24 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.10 2.11 8.18 -8.50 -0.07 2.04 16 29 H 0.23 0.78 7.80 -54.09 -0.42 0.36 16 30 H 0.09 1.34 7.59 -51.93 -0.39 0.94 16 31 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 32 H 0.10 0.61 8.02 -51.93 -0.42 0.20 16 33 H 0.09 0.67 7.75 -51.93 -0.40 0.27 16 34 H 0.11 1.53 5.92 -51.93 -0.31 1.22 16 35 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.58 7.80 -51.93 -0.41 0.17 16 39 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.07 1.55 8.10 -51.93 -0.42 1.12 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.76 8.11 -51.93 -0.42 1.34 16 43 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -32.75 380.35 -7.51 -40.26 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.51 Total: 1.41 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.94 Total: 9.11 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.59 Total: -45.32 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.19 Total: -26.36 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.75 -7.51 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268857352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.193 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds