Wall clock time and date at job start Tue Mar 31 2020 16:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 O 1.21615 * 120.00357 * 46.32710 * 3 2 1 5 5 N 1.34779 * 120.00162 * 226.31784 * 3 2 1 6 6 C 1.47678 * 134.45198 * 180.02562 * 5 3 2 7 7 C 1.53389 * 85.95974 * 155.78971 * 6 5 3 8 8 C 1.47679 * 134.44193 * 0.06590 * 5 3 2 9 9 C 1.52747 * 113.74993 * 137.85400 * 7 6 5 10 10 C 1.53291 * 108.97884 * 184.46103 * 9 7 6 11 11 O 1.42900 * 109.30657 * 304.75776 * 10 9 7 12 12 C 1.42886 * 114.39452 * 63.03506 * 11 10 9 13 13 C 1.53005 * 113.92540 * 268.73589 * 7 6 5 14 14 H 1.08996 * 109.53133 * 55.82056 * 13 7 6 15 15 C 1.50702 * 109.64064 * 295.55512 * 13 7 6 16 16 O 1.21273 * 120.00201 * 325.45133 * 15 13 7 17 17 N 1.34778 * 119.99532 * 145.45029 * 15 13 7 18 18 C 1.47072 * 136.05984 * 4.64976 * 17 15 13 19 19 C 1.53755 * 87.88505 * 152.95729 * 18 17 15 20 20 C 1.50708 * 114.08519 * 139.78002 * 19 18 17 21 21 H 1.08003 * 120.00230 * 266.56083 * 20 19 18 22 22 C 1.37878 * 119.99963 * 86.55915 * 20 19 18 23 23 N 1.31512 * 119.99921 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99775 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47042 * 90.00102 * 24 22 20 26 26 H 1.48502 * 109.46778 * 209.99571 * 24 22 20 27 27 H 1.48495 * 109.47231 * 329.99752 * 24 22 20 28 28 C 1.47067 * 136.05541 * 185.01356 * 17 15 13 29 29 H 4.39223 * 13.43150 * 359.97438 * 4 2 1 30 30 H 1.09003 * 113.79193 * 41.53464 * 6 5 3 31 31 H 1.09000 * 113.90459 * 270.06442 * 6 5 3 32 32 H 1.09004 * 113.79395 * 89.95421 * 8 5 3 33 33 H 1.08996 * 113.80460 * 318.46291 * 8 5 3 34 34 H 1.09002 * 109.56741 * 64.58180 * 9 7 6 35 35 H 1.09000 * 109.57237 * 304.34383 * 9 7 6 36 36 H 1.09002 * 109.49583 * 64.70239 * 10 9 7 37 37 H 1.08996 * 109.50498 * 184.80382 * 10 9 7 38 38 H 1.08999 * 109.49817 * 56.92573 * 12 11 10 39 39 H 1.08998 * 109.50051 * 176.98260 * 12 11 10 40 40 H 1.08994 * 113.46215 * 267.68808 * 18 17 15 41 41 H 1.09003 * 113.46595 * 38.13169 * 18 17 15 42 42 H 1.08995 * 114.39651 * 272.67146 * 19 18 17 43 43 H 0.97006 * 119.99752 * 179.97438 * 23 22 20 44 44 H 1.09003 * 113.46617 * 321.86813 * 28 17 15 45 45 H 1.08994 * 113.46825 * 92.30644 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 8 3.2145 -0.7264 -0.7618 5 7 3.2796 0.8071 0.8441 6 6 4.7095 1.0626 1.1103 7 6 4.2558 2.4306 1.6351 8 6 2.8831 1.7886 1.8738 9 6 4.9628 2.8626 2.9183 10 6 4.3518 4.1818 3.4043 11 8 4.4237 5.1503 2.3560 12 6 3.6732 4.8126 1.1880 13 6 4.2439 3.5304 0.5715 14 1 3.6207 3.2197 -0.2670 15 6 5.6490 3.7842 0.0895 16 8 6.5807 3.6896 0.8600 17 7 5.8701 4.1164 -1.1978 18 6 5.0372 4.4043 -2.3753 19 6 6.1867 5.2780 -2.9039 20 6 6.4247 5.1501 -4.3865 21 1 7.1535 4.4447 -4.7576 22 6 5.7121 5.9336 -5.2693 23 7 4.8243 6.7923 -4.8174 24 14 6.0067 5.7746 -7.1070 25 1 5.0927 4.7472 -7.6678 26 1 5.7466 7.0803 -7.7648 27 1 7.4147 5.3699 -7.3495 28 6 7.0505 4.3440 -2.0450 29 1 -1.0500 -0.0008 -0.0002 30 1 5.3214 1.1179 0.2099 31 1 5.1382 0.4174 1.8772 32 1 2.7655 1.3591 2.8687 33 1 2.0450 2.4205 1.5797 34 1 6.0254 3.0035 2.7199 35 1 4.8327 2.0965 3.6826 36 1 3.3096 4.0204 3.6796 37 1 4.9059 4.5420 4.2710 38 1 2.6298 4.6524 1.4598 39 1 3.7399 5.6254 0.4650 40 1 4.8395 3.5276 -2.9919 41 1 4.1341 4.9679 -2.1408 42 1 6.1637 6.3108 -2.5565 43 1 4.3232 7.3438 -5.4385 44 1 7.8627 4.8563 -1.5291 45 1 7.3834 3.4515 -2.5745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268857352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:23 Heat of formation + Delta-G solvation = 4.127744 kcal Electronic energy + Delta-G solvation = -29472.337552 eV Core-core repulsion = 25458.800199 eV Total energy + Delta-G solvation = -4013.537352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.63472 -40.93024 -40.00778 -38.51829 -38.28637 -34.68261 -34.32759 -33.35322 -32.79058 -30.68043 -29.19080 -27.69497 -27.05605 -26.72363 -25.09238 -24.84121 -23.00171 -22.38636 -20.53499 -19.52615 -19.16791 -18.78249 -18.03749 -17.83991 -17.40131 -17.07592 -16.87566 -16.68925 -16.64307 -16.27470 -16.10544 -15.66517 -15.50555 -14.77568 -14.60899 -14.27326 -14.04846 -13.85373 -13.61860 -13.51742 -13.32426 -13.28469 -13.03702 -12.85075 -12.61297 -12.59521 -12.21765 -12.12180 -11.97657 -11.94514 -11.83228 -11.63596 -11.44978 -11.18711 -11.09561 -10.69225 -10.55840 -10.24890 -9.97137 -9.55037 -8.19310 -6.30318 0.53452 1.23583 1.44735 1.46715 1.56151 1.61373 1.83903 1.94905 2.43875 2.50676 2.92117 3.00308 3.09093 3.11165 3.34737 3.57230 3.71957 3.85742 3.90630 4.16965 4.20137 4.27899 4.33676 4.35966 4.38322 4.43922 4.46089 4.53140 4.56465 4.60731 4.66519 4.67897 4.72815 4.78074 4.88864 4.90447 4.98112 5.04398 5.11883 5.46115 5.55715 5.78539 6.20554 6.25548 6.30333 6.39382 6.77483 6.80438 6.92698 7.19400 7.39700 8.90696 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.003848 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.448600 B = 7273.886760 C = 8709.834554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 C -0.299 4.299 3 C 0.638 3.362 4 O -0.585 6.585 5 N -0.634 5.634 6 C 0.116 3.884 7 C -0.070 4.070 8 C 0.125 3.875 9 C -0.141 4.141 10 C 0.060 3.940 11 O -0.399 6.399 12 C 0.080 3.920 13 C -0.109 4.109 14 H 0.090 0.910 15 C 0.540 3.460 16 O -0.569 6.569 17 N -0.649 5.649 18 C 0.114 3.886 19 C 0.027 3.973 20 C -0.532 4.532 21 H 0.063 0.937 22 C 0.024 3.976 23 N -0.916 5.916 24 Si 0.956 3.044 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.268 1.268 28 C 0.105 3.895 29 H 0.285 0.715 30 H 0.046 0.954 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.266 0.734 44 H 0.056 0.944 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.336 -8.465 18.372 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.301 4.301 3 C 0.430 3.570 4 O -0.467 6.467 5 N -0.367 5.367 6 C -0.006 4.006 7 C -0.071 4.071 8 C 0.004 3.996 9 C -0.178 4.178 10 C -0.016 4.016 11 O -0.318 6.318 12 C 0.003 3.997 13 C -0.131 4.131 14 H 0.109 0.891 15 C 0.331 3.669 16 O -0.449 6.449 17 N -0.383 5.383 18 C -0.009 4.009 19 C 0.008 3.992 20 C -0.570 4.570 21 H 0.081 0.919 22 C -0.176 4.176 23 N -0.554 5.554 24 Si 0.782 3.218 25 H -0.201 1.201 26 H -0.208 1.208 27 H -0.192 1.192 28 C -0.017 4.017 29 H 0.300 0.700 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.153 0.847 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.664 -8.762 18.448 23.519 hybrid contribution 0.374 -0.297 -1.687 1.754 sum -11.290 -9.059 16.760 22.146 Atomic orbital electron populations 1.26337 0.96236 0.90639 0.91036 1.21294 0.93103 1.07951 1.07782 1.14858 0.84212 0.78247 0.79646 1.90835 1.70433 1.42923 1.42513 1.49978 1.09365 1.40574 1.36823 1.23335 0.82489 0.94797 0.99940 1.21758 0.97657 0.91773 0.95919 1.23679 0.96395 0.86748 0.92744 1.22237 1.01579 0.99294 0.94723 1.22842 1.01776 0.87567 0.89411 1.87965 1.72273 1.45967 1.25602 1.22503 0.95837 0.93796 0.87560 1.21679 0.93364 0.98937 0.99117 0.89142 1.20387 0.91741 0.75200 0.79603 1.90550 1.46408 1.54126 1.53842 1.50068 1.12791 1.67616 1.07807 1.23322 0.96908 0.98174 0.82448 1.20240 0.91524 0.93410 0.94041 1.21208 1.22722 1.22161 0.90891 0.91909 1.25723 0.94530 0.94168 1.03200 1.70045 1.24986 1.23985 1.36359 0.85579 0.78823 0.77472 0.79950 1.20064 1.20825 1.19224 1.23152 0.90142 0.98924 0.89511 0.69968 0.93568 0.86559 0.84678 0.87610 0.90937 0.87070 0.89820 0.87822 0.88035 0.89995 0.91384 0.92033 0.93971 0.92540 0.92528 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.30 19.25 74.32 1.43 1.14 16 2 C -0.30 -6.64 13.34 30.01 0.40 -6.23 16 3 C 0.64 19.23 7.88 85.49 0.67 19.90 16 4 O -0.58 -23.59 17.81 -4.08 -0.07 -23.66 16 5 N -0.63 -15.20 3.48 -853.12 -2.97 -18.17 16 6 C 0.12 2.93 7.80 86.28 0.67 3.60 16 7 C -0.07 -1.46 0.25 -51.96 -0.01 -1.48 16 8 C 0.12 1.75 7.55 86.29 0.65 2.40 16 9 C -0.14 -2.59 4.90 30.61 0.15 -2.44 16 10 C 0.06 1.01 6.79 72.08 0.49 1.50 16 11 O -0.40 -10.56 10.41 -148.98 -1.55 -12.11 16 12 C 0.08 1.94 6.17 72.08 0.44 2.39 16 13 C -0.11 -3.04 2.06 -11.44 -0.02 -3.06 16 14 H 0.09 2.63 7.75 -2.39 -0.02 2.61 16 15 C 0.54 20.53 6.14 87.66 0.54 21.07 16 16 O -0.57 -23.92 14.76 -3.01 -0.04 -23.96 16 17 N -0.65 -27.14 3.69 -857.77 -3.16 -30.30 16 18 C 0.11 4.99 7.78 83.27 0.65 5.63 16 19 C 0.03 1.33 3.80 -11.12 -0.04 1.28 16 20 C -0.53 -27.90 8.82 25.60 0.23 -27.67 16 21 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 22 C 0.02 1.28 5.46 84.66 0.46 1.75 16 23 N -0.92 -50.56 13.26 21.45 0.28 -50.28 16 24 Si 0.96 41.78 29.54 68.60 2.03 43.81 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 C 0.11 4.62 8.18 83.18 0.68 5.30 16 29 H 0.28 -0.04 7.80 -4.42 -0.03 -0.07 16 30 H 0.05 1.53 7.59 -2.39 -0.02 1.51 16 31 H 0.12 2.35 8.09 -2.39 -0.02 2.33 16 32 H 0.14 0.92 8.02 -2.38 -0.02 0.90 16 33 H 0.11 1.12 7.75 -2.39 -0.02 1.11 16 34 H 0.07 1.96 5.92 -2.39 -0.01 1.95 16 35 H 0.11 1.19 8.03 -2.39 -0.02 1.17 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.59 7.80 -2.39 -0.02 1.57 16 39 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 3.01 8.10 -2.39 -0.02 3.00 16 41 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.04 2.27 8.11 -2.39 -0.02 2.25 16 43 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 44 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 45 H 0.08 3.27 8.10 -2.39 -0.02 3.25 16 Total: -1.00 -78.16 380.35 2.89 -75.27 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.99 Total: 14.32 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 7.39 Total: 25.09 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -5.85 Total: -98.75 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -1.67 Total: -59.73 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -78.16 2.89 -75.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268857352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.398 kcal (2) G-P(sol) polarization free energy of solvation -78.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds