Wall clock time and date at job start Tue Mar 31 2020 16:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 O 1.21619 * 120.00006 * 184.82460 * 3 2 1 5 5 N 1.34783 * 120.00610 * 4.82336 * 3 2 1 6 6 C 1.47346 * 125.62634 * 180.02562 * 5 3 2 7 7 C 1.54355 * 105.15850 * 203.97417 * 6 5 3 8 8 H 1.08998 * 113.96046 * 88.58183 * 7 6 5 9 9 C 1.54760 * 109.10901 * 217.23559 * 7 6 5 10 10 C 1.54244 * 102.74163 * 75.11588 * 9 7 6 11 11 H 1.09000 * 109.83895 * 262.64594 * 10 9 7 12 12 C 1.52995 * 109.84511 * 141.73634 * 10 9 7 13 13 C 1.50708 * 109.47201 * 174.99942 * 12 10 9 14 14 O 1.21275 * 120.00138 * 0.02562 * 13 12 10 15 15 N 1.34774 * 119.99563 * 179.97438 * 13 12 10 16 16 C 1.47582 * 134.48840 * 179.97438 * 15 13 12 17 17 C 1.53945 * 86.11723 * 155.36573 * 16 15 13 18 18 C 1.50694 * 113.74220 * 137.95305 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99854 * 179.72538 * 20 18 17 23 23 H 1.48498 * 109.47200 * 59.99994 * 22 20 18 24 24 H 1.48498 * 109.46671 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47156 * 300.00008 * 22 20 18 26 26 C 1.47581 * 134.49815 * 0.02562 * 15 13 12 27 27 O 1.43101 * 107.52108 * 22.24141 * 10 9 7 28 28 C 1.43477 * 110.69221 * 359.03748 * 27 10 9 29 29 H 1.09001 * 113.43340 * 103.43056 * 28 27 10 30 30 C 1.46905 * 125.61699 * 0.02629 * 5 3 2 31 31 H 4.39222 * 13.43098 * 359.97438 * 4 2 1 32 32 H 1.08997 * 110.30471 * 85.05068 * 6 5 3 33 33 H 1.09005 * 110.38733 * 322.93959 * 6 5 3 34 34 H 1.09001 * 110.75795 * 316.79738 * 9 7 6 35 35 H 1.09001 * 110.91487 * 193.49766 * 9 7 6 36 36 H 1.08996 * 109.47343 * 54.99795 * 12 10 9 37 37 H 1.09003 * 109.47203 * 294.99826 * 12 10 9 38 38 H 1.08999 * 113.77094 * 41.05869 * 16 15 13 39 39 H 1.09004 * 113.86995 * 269.67852 * 16 15 13 40 40 H 1.08998 * 113.73702 * 269.15676 * 17 16 15 41 41 H 0.97001 * 119.99646 * 180.02562 * 21 20 18 42 42 H 1.09004 * 113.76846 * 90.33339 * 26 15 13 43 43 H 1.09000 * 113.76699 * 318.93862 * 26 15 13 44 44 H 1.08998 * 109.82893 * 298.10457 * 30 5 3 45 45 H 1.08998 * 109.82824 * 58.97666 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 8 3.2136 1.0504 0.0886 5 7 3.2805 -1.1621 -0.0981 6 6 4.7469 -1.3053 -0.1097 7 6 5.0161 -2.6435 -0.8304 8 1 5.1088 -2.5526 -1.9126 9 6 6.2146 -3.3512 -0.1537 10 6 5.5986 -3.8871 1.1549 11 1 5.8130 -3.1998 1.9733 12 6 6.1746 -5.2684 1.4726 13 6 5.6618 -5.7306 2.8122 14 8 4.9093 -5.0249 3.4498 15 7 6.0387 -6.9286 3.3011 16 6 5.7446 -7.6804 4.5367 17 6 6.0839 -8.9433 3.7245 18 6 6.9132 -9.9476 4.4825 19 1 7.2120 -9.7433 5.5000 20 6 7.2906 -11.1275 3.8770 21 7 6.9272 -11.3762 2.6377 22 14 8.3251 -12.3690 4.8141 23 1 7.5922 -12.8076 6.0289 24 1 8.5935 -13.5444 3.9471 25 1 9.6114 -11.7422 5.2113 26 6 6.9118 -8.0153 2.8166 27 8 4.1846 -3.9842 0.9573 28 6 3.8246 -3.5373 -0.3577 29 1 3.6019 -4.3521 -1.0466 30 6 2.6748 -2.4957 -0.2112 31 1 -1.0500 -0.0011 -0.0005 32 1 5.1316 -1.3404 0.9095 33 1 5.2046 -0.4817 -0.6579 34 1 7.0136 -2.6406 0.0580 35 1 6.5821 -4.1705 -0.7716 36 1 7.2627 -5.2107 1.5003 37 1 5.8678 -5.9760 0.7023 38 1 4.7013 -7.6246 4.8470 39 1 6.4417 -7.4811 5.3507 40 1 5.2224 -9.3910 3.2291 41 1 7.1924 -12.2064 2.2119 42 1 7.9524 -7.9132 3.1248 43 1 6.8006 -8.2271 1.7532 44 1 2.0819 -2.7091 0.6782 45 1 2.0412 -2.5401 -1.0970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268857722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:55 Heat of formation + Delta-G solvation = -10.394543 kcal Electronic energy + Delta-G solvation = -27940.285159 eV Core-core repulsion = 23926.118073 eV Total energy + Delta-G solvation = -4014.167086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18005 -39.56104 -39.01833 -37.02061 -35.94600 -33.63323 -32.90798 -32.67392 -31.61720 -29.56528 -28.61290 -27.15914 -25.31390 -25.08421 -24.22343 -22.47858 -21.30056 -21.02744 -20.07528 -18.87234 -18.11488 -17.26810 -16.91766 -16.84044 -16.49933 -16.02528 -15.98325 -15.47569 -15.26909 -14.75292 -14.47268 -14.24068 -13.97567 -13.62791 -13.48864 -13.05926 -12.89849 -12.70350 -12.46225 -12.06359 -11.83996 -11.80260 -11.58110 -11.45838 -11.29945 -11.25000 -11.21004 -11.17974 -11.00902 -10.95772 -10.80409 -10.66142 -10.41195 -9.67318 -9.59676 -9.28329 -9.06237 -8.89677 -8.59745 -7.80469 -6.19972 -4.25357 1.27634 1.97534 2.65262 3.23432 3.24139 3.26952 3.29002 3.31481 3.35817 3.61418 3.80863 3.96791 4.13196 4.31551 4.41934 4.64474 4.65474 4.82951 4.98674 5.02185 5.08691 5.11062 5.14456 5.28790 5.35883 5.39180 5.48089 5.49869 5.54152 5.63747 5.75985 5.83677 6.04528 6.09411 6.23703 6.30047 6.41368 6.57278 6.66157 6.81969 6.84505 6.99543 7.01424 7.54535 7.67946 7.77897 8.16184 8.57805 8.78064 8.83674 9.41385 10.89607 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.002088 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.474237 B =13404.636614 C =13661.475489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.226 4.226 3 C 0.645 3.355 4 O -0.525 6.525 5 N -0.604 5.604 6 C 0.115 3.885 7 C -0.134 4.134 8 H 0.114 0.886 9 C -0.144 4.144 10 C 0.101 3.899 11 H 0.087 0.913 12 C -0.146 4.146 13 C 0.526 3.474 14 O -0.556 6.556 15 N -0.643 5.643 16 C 0.102 3.898 17 C 0.034 3.966 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.887 5.887 22 Si 0.895 3.105 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.103 3.897 27 O -0.347 6.347 28 C 0.070 3.930 29 H 0.112 0.888 30 C 0.095 3.905 31 H 0.234 0.766 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.264 0.736 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 16.049 -11.496 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.229 4.229 3 C 0.434 3.566 4 O -0.403 6.403 5 N -0.337 5.337 6 C -0.007 4.007 7 C -0.153 4.153 8 H 0.132 0.868 9 C -0.182 4.182 10 C 0.043 3.957 11 H 0.104 0.896 12 C -0.186 4.186 13 C 0.315 3.685 14 O -0.435 6.435 15 N -0.378 5.378 16 C -0.019 4.019 17 C 0.015 3.985 18 C -0.557 4.557 19 H 0.080 0.920 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.723 3.277 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.019 4.019 27 O -0.266 6.266 28 C 0.011 3.989 29 H 0.130 0.870 30 C -0.028 4.028 31 H 0.251 0.749 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.931 17.026 -11.170 21.209 hybrid contribution 0.623 -0.797 0.223 1.036 sum -5.308 16.229 -10.947 20.283 Atomic orbital electron populations 1.25270 0.95846 0.96970 0.92843 1.21366 0.93259 1.03061 1.05226 1.14313 0.82878 0.82497 0.76931 1.90870 1.68955 1.30485 1.49981 1.48139 1.07702 1.05874 1.71954 1.22253 0.79707 0.97250 1.01455 1.23844 0.95502 0.94768 1.01216 0.86793 1.23115 0.97832 1.00883 0.96327 1.22471 0.80757 0.95521 0.96963 0.89560 1.22010 1.01863 0.97738 0.96976 1.20062 0.81391 0.79701 0.87347 1.90656 1.37241 1.54201 1.61406 1.50460 1.47964 1.16318 1.23023 1.23450 0.99675 0.90465 0.88352 1.20492 0.95798 0.90041 0.92194 1.20954 1.33147 1.02051 0.99597 0.91974 1.25026 0.95782 0.97847 0.94928 1.69940 1.45129 1.25358 1.12000 0.86603 0.80738 0.80563 0.79813 1.20067 1.21244 1.20094 1.23695 0.94970 0.83263 0.99978 1.88589 1.22220 1.86397 1.29359 1.24247 0.93493 0.94439 0.86691 0.87021 1.22561 0.96209 0.80980 1.03024 0.74923 0.90268 0.89599 0.89191 0.89327 0.88312 0.88649 0.92223 0.91014 0.91777 0.92616 0.90827 0.91957 0.89510 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 19.25 29.55 0.57 -0.08 16 2 C -0.23 -2.41 12.77 -38.84 -0.50 -2.90 16 3 C 0.64 8.32 7.69 -14.33 -0.11 8.21 16 4 O -0.53 -8.45 17.34 5.26 0.09 -8.36 16 5 N -0.60 -6.63 3.32 -172.93 -0.57 -7.20 16 6 C 0.12 1.11 6.15 -2.87 -0.02 1.10 16 7 C -0.13 -1.02 4.34 -87.23 -0.38 -1.39 16 8 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 9 C -0.14 -1.12 5.86 -25.15 -0.15 -1.27 16 10 C 0.10 1.22 2.35 -26.08 -0.06 1.16 16 11 H 0.09 1.17 7.64 -51.93 -0.40 0.78 16 12 C -0.15 -1.99 5.02 -27.88 -0.14 -2.13 16 13 C 0.53 10.03 7.96 -10.98 -0.09 9.94 16 14 O -0.56 -12.41 16.23 -6.28 -0.10 -12.51 16 15 N -0.64 -12.90 3.61 -178.40 -0.64 -13.54 16 16 C 0.10 2.15 8.39 -2.97 -0.02 2.12 16 17 C 0.03 0.78 3.62 -90.83 -0.33 0.46 16 18 C -0.52 -13.05 8.77 -34.44 -0.30 -13.36 16 19 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 20 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -23.69 13.27 55.43 0.74 -22.95 16 22 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 26 C 0.10 2.10 8.17 -2.96 -0.02 2.08 16 27 O -0.35 -4.77 9.79 -47.07 -0.46 -5.23 16 28 C 0.07 0.65 4.77 -23.46 -0.11 0.54 16 29 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 30 C 0.10 0.89 6.11 -2.30 -0.01 0.87 16 31 H 0.23 0.56 7.80 -54.09 -0.42 0.14 16 32 H 0.08 0.85 7.02 -51.93 -0.36 0.49 16 33 H 0.09 0.79 8.04 -51.93 -0.42 0.37 16 34 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.09 0.59 7.85 -51.93 -0.41 0.18 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 40 H 0.06 1.62 8.13 -51.93 -0.42 1.20 16 41 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -33.57 383.02 -8.59 -42.15 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.61 Total: 0.11 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -1.77 Total: 6.98 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.48 Total: -43.70 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.47 Total: -26.10 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.57 -8.59 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268857722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.760 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds