Wall clock time and date at job start Tue Mar 31 2020 16:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 O 1.21619 * 120.00006 * 184.82460 * 3 2 1 5 5 N 1.34783 * 120.00610 * 4.82336 * 3 2 1 6 6 C 1.47346 * 125.62634 * 180.02562 * 5 3 2 7 7 C 1.54355 * 105.15850 * 203.97417 * 6 5 3 8 8 H 1.08998 * 113.96046 * 88.58183 * 7 6 5 9 9 C 1.54760 * 109.10901 * 217.23559 * 7 6 5 10 10 C 1.54244 * 102.74163 * 75.11588 * 9 7 6 11 11 H 1.09000 * 109.83895 * 262.64594 * 10 9 7 12 12 C 1.52995 * 109.84511 * 141.73634 * 10 9 7 13 13 C 1.50708 * 109.47201 * 174.99942 * 12 10 9 14 14 O 1.21275 * 120.00138 * 0.02562 * 13 12 10 15 15 N 1.34774 * 119.99563 * 179.97438 * 13 12 10 16 16 C 1.47582 * 134.48840 * 179.97438 * 15 13 12 17 17 C 1.53945 * 86.11723 * 155.36573 * 16 15 13 18 18 C 1.50694 * 113.74220 * 137.95305 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99854 * 179.72538 * 20 18 17 23 23 H 1.48498 * 109.47200 * 59.99994 * 22 20 18 24 24 H 1.48498 * 109.46671 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47156 * 300.00008 * 22 20 18 26 26 C 1.47581 * 134.49815 * 0.02562 * 15 13 12 27 27 O 1.43101 * 107.52108 * 22.24141 * 10 9 7 28 28 C 1.43477 * 110.69221 * 359.03748 * 27 10 9 29 29 H 1.09001 * 113.43340 * 103.43056 * 28 27 10 30 30 C 1.46905 * 125.61699 * 0.02629 * 5 3 2 31 31 H 4.39222 * 13.43098 * 359.97438 * 4 2 1 32 32 H 1.08997 * 110.30471 * 85.05068 * 6 5 3 33 33 H 1.09005 * 110.38733 * 322.93959 * 6 5 3 34 34 H 1.09001 * 110.75795 * 316.79738 * 9 7 6 35 35 H 1.09001 * 110.91487 * 193.49766 * 9 7 6 36 36 H 1.08996 * 109.47343 * 54.99795 * 12 10 9 37 37 H 1.09003 * 109.47203 * 294.99826 * 12 10 9 38 38 H 1.08999 * 113.77094 * 41.05869 * 16 15 13 39 39 H 1.09004 * 113.86995 * 269.67852 * 16 15 13 40 40 H 1.08998 * 113.73702 * 269.15676 * 17 16 15 41 41 H 0.97001 * 119.99646 * 180.02562 * 21 20 18 42 42 H 1.09004 * 113.76846 * 90.33339 * 26 15 13 43 43 H 1.09000 * 113.76699 * 318.93862 * 26 15 13 44 44 H 1.08998 * 109.82893 * 298.10457 * 30 5 3 45 45 H 1.08998 * 109.82824 * 58.97666 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 8 3.2136 1.0504 0.0886 5 7 3.2805 -1.1621 -0.0981 6 6 4.7469 -1.3053 -0.1097 7 6 5.0161 -2.6435 -0.8304 8 1 5.1088 -2.5526 -1.9126 9 6 6.2146 -3.3512 -0.1537 10 6 5.5986 -3.8871 1.1549 11 1 5.8130 -3.1998 1.9733 12 6 6.1746 -5.2684 1.4726 13 6 5.6618 -5.7306 2.8122 14 8 4.9093 -5.0249 3.4498 15 7 6.0387 -6.9286 3.3011 16 6 5.7446 -7.6804 4.5367 17 6 6.0839 -8.9433 3.7245 18 6 6.9132 -9.9476 4.4825 19 1 7.2120 -9.7433 5.5000 20 6 7.2906 -11.1275 3.8770 21 7 6.9272 -11.3762 2.6377 22 14 8.3251 -12.3690 4.8141 23 1 7.5922 -12.8076 6.0289 24 1 8.5935 -13.5444 3.9471 25 1 9.6114 -11.7422 5.2113 26 6 6.9118 -8.0153 2.8166 27 8 4.1846 -3.9842 0.9573 28 6 3.8246 -3.5373 -0.3577 29 1 3.6019 -4.3521 -1.0466 30 6 2.6748 -2.4957 -0.2112 31 1 -1.0500 -0.0011 -0.0005 32 1 5.1316 -1.3404 0.9095 33 1 5.2046 -0.4817 -0.6579 34 1 7.0136 -2.6406 0.0580 35 1 6.5821 -4.1705 -0.7716 36 1 7.2627 -5.2107 1.5003 37 1 5.8678 -5.9760 0.7023 38 1 4.7013 -7.6246 4.8470 39 1 6.4417 -7.4811 5.3507 40 1 5.2224 -9.3910 3.2291 41 1 7.1924 -12.2064 2.2119 42 1 7.9524 -7.9132 3.1248 43 1 6.8006 -8.2271 1.7532 44 1 2.0819 -2.7091 0.6782 45 1 2.0412 -2.5401 -1.0970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268857722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:54 Heat of formation + Delta-G solvation = -32.179561 kcal Electronic energy + Delta-G solvation = -27941.229828 eV Core-core repulsion = 23926.118073 eV Total energy + Delta-G solvation = -4015.111755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.01098 -40.94000 -40.16400 -38.59508 -36.93493 -34.60825 -34.34555 -33.75017 -32.58843 -30.95563 -29.67446 -28.16604 -26.82679 -26.79724 -25.27591 -23.25241 -22.42643 -21.76173 -21.52235 -19.71795 -19.59271 -18.68915 -18.02640 -17.88607 -17.73236 -17.16814 -16.88267 -16.66552 -16.42469 -16.29920 -16.09801 -15.25401 -15.01936 -14.75089 -14.50223 -14.13436 -14.01057 -13.75361 -13.70658 -13.49817 -13.28631 -13.10154 -12.78989 -12.76286 -12.55504 -12.47573 -12.27142 -12.20843 -12.05955 -11.97492 -11.89358 -11.71739 -11.61481 -11.36696 -11.12575 -10.65979 -10.56066 -10.44421 -9.92335 -9.47503 -8.14686 -6.25426 0.48957 1.29023 1.49422 1.50538 1.57644 1.76304 1.91612 2.07237 2.47354 2.47591 2.61729 3.13533 3.16080 3.23761 3.46483 3.55742 3.75890 3.87248 3.97500 4.11313 4.24335 4.29971 4.34370 4.37540 4.49204 4.51458 4.58617 4.60681 4.62179 4.68204 4.69699 4.72710 4.85854 4.91489 4.94910 5.01484 5.03644 5.08539 5.15019 5.20212 5.62071 5.83587 6.15764 6.18916 6.22471 6.25361 6.78140 6.81806 6.99745 7.28337 7.44296 8.94717 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.002088 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.474237 B =13404.636614 C =13661.475489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.301 4.301 3 C 0.636 3.364 4 O -0.575 6.575 5 N -0.604 5.604 6 C 0.107 3.893 7 C -0.115 4.115 8 H 0.147 0.853 9 C -0.131 4.131 10 C 0.098 3.902 11 H 0.060 0.940 12 C -0.136 4.136 13 C 0.518 3.482 14 O -0.594 6.594 15 N -0.646 5.646 16 C 0.104 3.896 17 C 0.023 3.977 18 C -0.532 4.532 19 H 0.062 0.938 20 C 0.022 3.978 21 N -0.916 5.916 22 Si 0.956 3.044 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.268 1.268 26 C 0.122 3.878 27 O -0.384 6.384 28 C 0.064 3.936 29 H 0.139 0.861 30 C 0.095 3.905 31 H 0.282 0.718 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.434 15.790 -13.290 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.304 4.304 3 C 0.427 3.573 4 O -0.457 6.457 5 N -0.335 5.335 6 C -0.015 4.015 7 C -0.134 4.134 8 H 0.165 0.835 9 C -0.168 4.168 10 C 0.040 3.960 11 H 0.078 0.922 12 C -0.175 4.175 13 C 0.310 3.690 14 O -0.476 6.476 15 N -0.380 5.380 16 C -0.019 4.019 17 C 0.003 3.997 18 C -0.570 4.570 19 H 0.081 0.919 20 C -0.178 4.178 21 N -0.554 5.554 22 Si 0.782 3.218 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.193 1.193 26 C -0.001 4.001 27 O -0.304 6.304 28 C 0.006 3.994 29 H 0.156 0.844 30 C -0.027 4.027 31 H 0.298 0.702 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.691 16.743 -12.971 21.930 hybrid contribution 0.379 -0.708 0.851 1.170 sum -5.312 16.034 -12.120 20.789 Atomic orbital electron populations 1.26344 0.96380 0.93212 0.88717 1.21426 0.93487 1.06658 1.08826 1.14726 0.84106 0.82295 0.76152 1.90814 1.70230 1.32039 1.52607 1.48278 1.08338 1.06100 1.70790 1.22374 0.79269 0.98981 1.00875 1.23860 0.94499 0.92457 1.02591 0.83527 1.23089 0.97911 1.01807 0.94040 1.22469 0.80766 0.94163 0.98618 0.92192 1.22090 1.03339 0.98644 0.93460 1.21088 0.80419 0.78649 0.88878 1.90638 1.38900 1.55081 1.62935 1.50494 1.48059 1.16905 1.22545 1.23332 0.99576 0.89933 0.89017 1.20404 0.95267 0.90686 0.93311 1.21239 1.33154 1.02803 0.99802 0.91939 1.25720 0.96874 0.99514 0.95683 1.70036 1.46276 1.25880 1.13236 0.85642 0.79415 0.78327 0.78447 1.20000 1.21160 1.19276 1.23435 0.94754 0.82114 0.99748 1.88557 1.23166 1.86701 1.31989 1.24569 0.93981 0.95266 0.85557 0.84416 1.22653 0.96572 0.80201 1.03292 0.70191 0.92208 0.89326 0.87615 0.86899 0.85616 0.87257 0.92786 0.90245 0.94751 0.92615 0.90101 0.91169 0.91510 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.34 19.25 74.32 1.43 1.10 16 2 C -0.30 -6.36 12.77 30.01 0.38 -5.97 16 3 C 0.64 17.22 7.69 85.48 0.66 17.88 16 4 O -0.58 -19.76 17.34 -4.09 -0.07 -19.83 16 5 N -0.60 -13.49 3.32 -819.26 -2.72 -16.21 16 6 C 0.11 2.05 6.15 86.68 0.53 2.59 16 7 C -0.12 -1.46 4.34 -8.60 -0.04 -1.49 16 8 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 9 C -0.13 -1.66 5.86 31.62 0.19 -1.47 16 10 C 0.10 2.28 2.35 31.01 0.07 2.35 16 11 H 0.06 1.68 7.64 -2.39 -0.02 1.66 16 12 C -0.14 -3.46 5.02 29.85 0.15 -3.31 16 13 C 0.52 19.64 7.96 87.66 0.70 20.34 16 14 O -0.59 -27.12 16.23 8.31 0.13 -26.99 16 15 N -0.65 -25.74 3.61 -836.72 -3.02 -28.75 16 16 C 0.10 4.41 8.39 86.48 0.73 5.13 16 17 C 0.02 1.05 3.62 -10.87 -0.04 1.01 16 18 C -0.53 -26.72 8.77 25.60 0.22 -26.50 16 19 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 20 C 0.02 1.14 5.46 84.66 0.46 1.60 16 21 N -0.92 -48.87 13.27 21.45 0.28 -48.58 16 22 Si 0.96 40.18 29.54 68.60 2.03 42.21 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.29 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 C 0.12 4.85 8.17 86.49 0.71 5.56 16 27 O -0.38 -10.44 9.79 -137.66 -1.35 -11.79 16 28 C 0.06 1.07 4.77 32.71 0.16 1.23 16 29 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 30 C 0.10 1.71 6.11 87.28 0.53 2.25 16 31 H 0.28 0.00 7.80 -4.42 -0.03 -0.03 16 32 H 0.06 1.37 7.02 -2.39 -0.02 1.35 16 33 H 0.09 1.63 8.04 -2.38 -0.02 1.61 16 34 H 0.11 1.05 8.08 -2.39 -0.02 1.04 16 35 H 0.11 0.97 7.85 -2.39 -0.02 0.95 16 36 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.05 2.30 8.14 -2.39 -0.02 2.29 16 39 H 0.08 3.22 8.09 -2.38 -0.02 3.20 16 40 H 0.03 1.79 8.13 -2.39 -0.02 1.78 16 41 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 42 H 0.08 3.12 8.09 -2.38 -0.02 3.10 16 43 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.07 1.47 8.07 -2.39 -0.02 1.45 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -77.17 383.02 3.12 -74.05 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.99 Total: 13.60 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 6.84 Total: 22.29 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -5.45 Total: -93.54 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -1.28 Total: -58.61 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -77.17 3.12 -74.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268857722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.870 kcal (2) G-P(sol) polarization free energy of solvation -77.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds