Wall clock time and date at job start Tue Mar 31 2020 16:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 O 1.21610 * 119.99953 * 92.91375 * 3 2 1 5 5 N 1.34781 * 119.99554 * 272.63642 * 3 2 1 6 6 C 1.47046 * 125.69820 * 179.71430 * 5 3 2 7 7 C 1.54090 * 107.57667 * 177.66243 * 6 5 3 8 8 H 1.09004 * 114.01458 * 103.37402 * 7 6 5 9 9 C 1.54464 * 108.97987 * 231.39616 * 7 6 5 10 10 C 1.53958 * 104.64850 * 89.63626 * 9 7 6 11 11 H 1.09002 * 109.87004 * 116.77660 * 10 9 7 12 12 C 1.52998 * 109.86163 * 237.74229 * 10 9 7 13 13 C 1.50701 * 109.47047 * 184.99969 * 12 10 9 14 14 O 1.21281 * 120.00189 * 0.02562 * 13 12 10 15 15 N 1.34787 * 120.00064 * 180.02562 * 13 12 10 16 16 C 1.47059 * 136.05693 * 359.62499 * 15 13 12 17 17 C 1.53751 * 87.88663 * 152.96529 * 16 15 13 18 18 C 1.50708 * 114.26457 * 139.79219 * 17 16 15 19 19 H 1.07990 * 119.99799 * 266.47224 * 18 17 16 20 20 C 1.37881 * 119.99604 * 86.47636 * 18 17 16 21 21 N 1.31509 * 120.00271 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99521 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47307 * 59.99971 * 22 20 18 24 24 H 1.48503 * 109.47404 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47442 * 300.00009 * 22 20 18 26 26 C 1.47060 * 136.05526 * 180.02562 * 15 13 12 27 27 O 1.44769 * 107.83422 * 357.81653 * 10 9 7 28 28 C 1.43913 * 106.98716 * 24.90373 * 27 10 9 29 29 H 1.08991 * 113.53027 * 87.52777 * 28 27 10 30 30 C 1.47358 * 125.70728 * 0.03120 * 5 3 2 31 31 H 4.39218 * 13.43037 * 0.02562 * 4 2 1 32 32 H 1.08999 * 109.83175 * 297.33154 * 6 5 3 33 33 H 1.08998 * 109.82896 * 58.30498 * 6 5 3 34 34 H 1.09000 * 110.40613 * 208.42305 * 9 7 6 35 35 H 1.08997 * 110.40308 * 330.73127 * 9 7 6 36 36 H 1.09001 * 109.47574 * 305.00030 * 12 10 9 37 37 H 1.09008 * 109.47454 * 65.00437 * 12 10 9 38 38 H 1.08994 * 113.47253 * 267.69845 * 16 15 13 39 39 H 1.09009 * 113.46790 * 38.13672 * 16 15 13 40 40 H 1.09001 * 114.39722 * 272.67497 * 17 16 15 41 41 H 0.97007 * 119.99616 * 179.97438 * 21 20 18 42 42 H 1.08997 * 113.46755 * 321.85573 * 26 15 13 43 43 H 1.09001 * 113.47237 * 92.24396 * 26 15 13 44 44 H 1.08994 * 110.31403 * 323.81584 * 30 5 3 45 45 H 1.08998 * 110.31469 * 86.00194 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 8 3.2140 0.0544 -1.0518 5 7 3.2798 -0.0528 1.1661 6 6 4.7430 -0.0648 1.3117 7 6 5.0604 -0.0717 2.8196 8 1 5.3695 -1.0440 3.2034 9 6 6.0648 1.0610 3.1267 10 6 5.1863 2.2865 3.4376 11 1 5.3445 2.6039 4.4683 12 6 5.5333 3.4304 2.4826 13 6 4.7578 4.6626 2.8720 14 8 4.0024 4.6292 3.8202 15 7 4.9038 5.8017 2.1664 16 6 5.6936 6.2330 1.0033 17 6 4.5958 7.2699 0.7141 18 6 5.1144 8.6125 0.2671 19 1 5.2794 9.3961 0.9917 20 6 5.3780 8.8404 -1.0669 21 7 5.1774 7.8860 -1.9492 22 14 6.0201 10.5047 -1.6210 23 1 7.3129 10.7861 -0.9466 24 1 6.2210 10.4931 -3.0923 25 1 5.0363 11.5585 -1.2646 26 6 4.3486 7.1622 2.2253 27 8 3.8030 1.8956 3.2659 28 6 3.7415 0.4710 3.4606 29 1 3.6047 0.1796 4.5019 30 6 2.6735 -0.1155 2.5077 31 1 -1.0500 0.0005 0.0001 32 1 5.1542 -0.9576 0.8407 33 1 5.1678 0.8269 0.8508 34 1 6.6761 0.8027 3.9914 35 1 6.6964 1.2542 2.2597 36 1 6.6014 3.6402 2.5397 37 1 5.2731 3.1445 1.4634 38 1 6.6519 6.6784 1.2702 39 1 5.7840 5.4678 0.2321 40 1 3.7761 6.8983 0.0992 41 1 5.3626 8.0465 -2.8878 42 1 3.2930 7.1889 2.4955 43 1 4.9521 7.8522 2.8151 44 1 1.7653 0.4863 2.5410 45 1 2.4538 -1.1489 2.7757 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268857723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:59 Heat of formation + Delta-G solvation = -4.470126 kcal Electronic energy + Delta-G solvation = -28583.968827 eV Core-core repulsion = 24570.058643 eV Total energy + Delta-G solvation = -4013.910184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08725 -39.49585 -38.95959 -37.09566 -35.83994 -33.50956 -32.93144 -32.65377 -31.53855 -29.55203 -28.60546 -27.24818 -25.21009 -24.91691 -24.07112 -22.17486 -21.53565 -20.85779 -20.17588 -18.81798 -18.12957 -17.21896 -16.83220 -16.79195 -16.37641 -16.05343 -15.66735 -15.44816 -15.25668 -14.72487 -14.42198 -14.30278 -13.86396 -13.54213 -13.47005 -13.02613 -12.90990 -12.47152 -12.44809 -12.07861 -11.83826 -11.73995 -11.50289 -11.47905 -11.34260 -11.20435 -11.12145 -11.07455 -10.91580 -10.84625 -10.79274 -10.48910 -10.32022 -9.75420 -9.56299 -9.17376 -8.92950 -8.91274 -8.55686 -7.79918 -6.15349 -4.21621 1.45379 2.12600 2.77805 3.24426 3.26691 3.32516 3.34103 3.42491 3.44774 3.61999 3.86090 4.08734 4.21372 4.35149 4.46381 4.68207 4.74166 4.79858 4.97394 5.06472 5.13472 5.17238 5.26512 5.28153 5.37861 5.39928 5.48056 5.51010 5.58752 5.71921 5.77152 5.97905 6.04440 6.09090 6.22732 6.29923 6.48335 6.58903 6.69685 6.82622 6.86961 7.00929 7.12864 7.58393 7.82066 7.85173 8.20869 8.60209 8.82038 8.84208 9.45141 10.94220 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012516 B = 0.003022 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.673536 B = 9263.118795 C =10390.112413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.223 4.223 3 C 0.645 3.355 4 O -0.519 6.519 5 N -0.603 5.603 6 C 0.119 3.881 7 C -0.131 4.131 8 H 0.113 0.887 9 C -0.144 4.144 10 C 0.097 3.903 11 H 0.079 0.921 12 C -0.136 4.136 13 C 0.533 3.467 14 O -0.556 6.556 15 N -0.646 5.646 16 C 0.097 3.903 17 C 0.035 3.965 18 C -0.519 4.519 19 H 0.063 0.937 20 C 0.069 3.931 21 N -0.885 5.885 22 Si 0.896 3.104 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.100 3.900 27 O -0.340 6.340 28 C 0.061 3.939 29 H 0.106 0.894 30 C 0.102 3.898 31 H 0.234 0.766 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.265 0.735 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 -19.964 10.133 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.226 4.226 3 C 0.434 3.566 4 O -0.396 6.396 5 N -0.336 5.336 6 C -0.003 4.003 7 C -0.150 4.150 8 H 0.131 0.869 9 C -0.182 4.182 10 C 0.039 3.961 11 H 0.097 0.903 12 C -0.176 4.176 13 C 0.323 3.677 14 O -0.435 6.435 15 N -0.380 5.380 16 C -0.025 4.025 17 C 0.016 3.984 18 C -0.557 4.557 19 H 0.081 0.919 20 C -0.135 4.135 21 N -0.521 5.521 22 Si 0.723 3.277 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.022 4.022 27 O -0.259 6.259 28 C 0.002 3.998 29 H 0.124 0.876 30 C -0.021 4.021 31 H 0.250 0.750 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.561 -20.037 9.837 22.376 hybrid contribution 0.453 0.762 -0.383 0.966 sum -1.108 -19.275 9.454 21.497 Atomic orbital electron populations 1.25242 0.95831 0.93014 0.97082 1.21349 0.93241 1.05087 1.02951 1.14323 0.82890 0.76864 0.82536 1.90887 1.68848 1.49470 1.30414 1.48074 1.07415 1.72643 1.05491 1.22020 0.79878 1.03014 0.95423 1.23681 0.96067 1.00247 0.95001 0.86867 1.23020 0.98124 0.93629 1.03437 1.22649 0.81271 0.92987 0.99219 0.90260 1.21833 1.01116 0.93152 1.01494 1.19900 0.82815 0.83375 0.81646 1.90647 1.39410 1.84534 1.28958 1.50017 1.45448 1.10075 1.32486 1.23641 0.97646 0.97126 0.84133 1.20378 0.94250 0.94596 0.89168 1.20875 1.44804 0.97181 0.92871 0.91913 1.25033 0.94908 0.96913 0.96642 1.69949 1.47234 1.32595 1.02349 0.86601 0.79503 0.84047 0.77535 1.20082 1.21212 1.20051 1.23304 0.97778 0.80388 1.00735 1.89242 1.25295 1.19106 1.92246 1.24142 0.94086 0.83384 0.98151 0.87640 1.22407 0.97589 1.00905 0.81234 0.74964 0.90780 0.90313 0.89709 0.89458 0.88045 0.88607 0.90852 0.92306 0.91429 0.92543 0.92633 0.91045 0.89274 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 19.25 29.55 0.57 -0.28 16 2 C -0.22 -2.85 12.48 -38.84 -0.48 -3.34 16 3 C 0.64 9.67 7.70 -14.33 -0.11 9.56 16 4 O -0.52 -9.67 17.42 5.27 0.09 -9.58 16 5 N -0.60 -7.33 3.30 -173.72 -0.57 -7.91 16 6 C 0.12 1.24 6.24 -3.17 -0.02 1.22 16 7 C -0.13 -1.00 4.23 -87.47 -0.37 -1.37 16 8 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 9 C -0.14 -1.18 5.93 -25.46 -0.15 -1.33 16 10 C 0.10 1.21 2.91 -26.23 -0.08 1.13 16 11 H 0.08 1.04 7.93 -51.93 -0.41 0.62 16 12 C -0.14 -2.01 5.03 -27.88 -0.14 -2.15 16 13 C 0.53 10.61 7.98 -10.98 -0.09 10.53 16 14 O -0.56 -12.62 16.26 -6.29 -0.10 -12.72 16 15 N -0.65 -13.55 3.69 -185.09 -0.68 -14.24 16 16 C 0.10 2.08 8.00 -8.39 -0.07 2.02 16 17 C 0.04 0.85 3.79 -91.11 -0.35 0.51 16 18 C -0.52 -13.45 8.83 -34.43 -0.30 -13.76 16 19 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 20 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 21 N -0.88 -24.63 13.26 55.43 0.74 -23.89 16 22 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.10 2.17 8.17 -8.51 -0.07 2.10 16 27 O -0.34 -4.90 10.05 -47.08 -0.47 -5.38 16 28 C 0.06 0.57 4.59 -24.04 -0.11 0.46 16 29 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 30 C 0.10 0.95 6.29 -2.69 -0.02 0.93 16 31 H 0.23 1.00 7.80 -54.09 -0.42 0.58 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.96 7.36 -51.93 -0.38 0.58 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.68 7.14 -51.93 -0.37 0.31 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.10 1.48 8.14 -51.92 -0.42 1.05 16 38 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 39 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 40 H 0.07 1.81 8.11 -51.93 -0.42 1.39 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 44 H 0.09 0.92 7.66 -51.93 -0.40 0.52 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -35.13 383.32 -8.73 -43.86 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.60 Total: 0.84 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -1.88 Total: 7.95 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.52 Total: -46.04 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.48 Total: -27.68 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.13 -8.73 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268857723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.392 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds