Wall clock time and date at job start Tue Mar 31 2020 17:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46921 * 2 1 4 4 C 1.50702 * 109.46945 * 239.99761 * 2 1 3 5 5 O 1.21281 * 120.00051 * 239.99842 * 4 2 1 6 6 N 1.34779 * 119.99840 * 60.00163 * 4 2 1 7 7 C 1.46494 * 119.99921 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47283 * 179.97438 * 7 6 4 9 9 H 1.08999 * 109.47269 * 305.00317 * 8 7 6 10 10 O 1.42903 * 109.46459 * 65.00211 * 8 7 6 11 11 C 1.53001 * 109.47376 * 185.00021 * 8 7 6 12 12 N 1.46497 * 109.46900 * 180.02562 * 11 8 7 13 13 C 1.36940 * 119.99699 * 180.02562 * 12 11 8 14 14 H 1.08003 * 120.00008 * 0.02562 * 13 12 11 15 15 C 1.38812 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00041 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99798 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47344 * 90.00426 * 17 15 13 19 19 H 1.48507 * 109.46989 * 209.99999 * 17 15 13 20 20 H 1.48500 * 109.47285 * 330.00003 * 17 15 13 21 21 C 1.50696 * 109.47154 * 119.99868 * 2 1 3 22 22 C 1.33997 * 124.92387 * 239.99617 * 21 2 1 23 23 C 1.46792 * 106.18560 * 179.97438 * 22 21 2 24 24 C 1.39403 * 134.36844 * 179.97438 * 23 22 21 25 25 C 1.36735 * 119.71372 * 179.97438 * 24 23 22 26 26 C 1.38743 * 120.42130 * 359.97438 * 25 24 23 27 27 C 1.37851 * 120.68081 * 0.02562 * 26 25 24 28 28 C 1.38937 * 119.81965 * 359.97438 * 27 26 25 29 29 O 1.34460 * 124.92481 * 59.69585 * 21 2 1 30 30 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46886 * 299.99878 * 1 2 3 32 32 H 1.08999 * 109.47534 * 60.00018 * 1 2 3 33 33 H 0.96999 * 119.99691 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.47040 * 60.00167 * 7 6 4 35 35 H 1.08999 * 109.47079 * 299.99869 * 7 6 4 36 36 H 0.96700 * 114.00311 * 60.00313 * 10 8 7 37 37 H 1.08999 * 109.47164 * 300.00361 * 11 8 7 38 38 H 1.08997 * 109.47124 * 60.00063 * 11 8 7 39 39 H 0.96996 * 120.00310 * 359.97438 * 12 11 8 40 40 H 0.97001 * 119.99921 * 180.02562 * 16 15 13 41 41 H 1.08000 * 126.90640 * 359.97132 * 22 21 2 42 42 H 1.07999 * 120.14377 * 359.97438 * 24 23 22 43 43 H 1.08007 * 119.79181 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.65965 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.09072 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9403 -3.6507 8 6 1.6848 -0.2195 -4.9000 9 1 0.5984 -0.1420 -4.8563 10 8 2.2537 1.0900 -4.9602 11 6 2.0900 -1.0095 -6.1461 12 7 1.6016 -0.3189 -7.3422 13 6 1.8458 -0.8436 -8.5833 14 1 2.3981 -1.7666 -8.6803 15 6 1.3826 -0.1895 -9.7167 16 7 0.7082 0.9345 -9.5984 17 14 1.7151 -0.9056 -11.4096 18 1 0.6069 -1.8192 -11.7871 19 1 1.8095 0.1946 -12.4026 20 1 2.9932 -1.6613 -11.3852 21 6 2.0323 -0.7104 1.2304 22 6 2.8060 -0.1564 2.1739 23 6 3.0465 -1.2045 3.1731 24 6 3.7584 -1.2651 4.3702 25 6 3.7831 -2.4300 5.0858 26 6 3.1042 -3.5501 4.6281 27 6 2.3951 -3.5090 3.4468 28 6 2.3571 -2.3352 2.7043 29 8 1.7645 -1.9902 1.5437 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.1493 0.5389 -2.5435 34 1 1.8324 -1.9681 -3.6508 35 1 3.2854 -0.9399 -3.6506 36 1 3.2198 1.0976 -5.0012 37 1 3.1764 -1.0869 -6.1898 38 1 1.6561 -2.0083 -6.1001 39 1 1.1046 0.5095 -7.2551 40 1 0.3841 1.3913 -10.3904 41 1 3.1779 0.8573 2.1949 42 1 4.2881 -0.3958 4.7308 43 1 4.3339 -2.4783 6.0136 44 1 3.1317 -4.4638 5.2034 45 1 1.8704 -4.3867 3.0992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272560080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:18 Heat of formation + Delta-G solvation = -77.283372 kcal Electronic energy + Delta-G solvation = -27075.308052 eV Core-core repulsion = 23058.240449 eV Total energy + Delta-G solvation = -4017.067603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.49808 -40.98802 -39.05439 -38.72044 -36.08782 -35.56978 -35.14553 -33.38804 -33.14648 -31.34532 -30.64427 -29.56571 -27.24440 -25.75074 -24.52276 -23.85849 -22.92760 -22.77615 -22.22971 -21.07626 -19.27607 -18.72536 -18.33299 -17.79538 -17.43827 -17.25747 -16.99897 -16.65374 -16.41693 -16.28511 -15.80836 -15.44616 -15.11518 -14.96155 -14.89125 -14.65793 -14.36789 -14.13532 -14.01826 -13.85226 -13.49230 -13.23358 -13.18751 -12.97596 -12.95352 -12.76111 -12.63510 -12.58447 -12.16918 -11.97262 -11.86020 -11.81261 -11.22950 -11.10106 -10.98595 -10.78397 -10.19817 -9.58932 -9.13074 -9.01559 -7.95570 -5.24921 -0.07466 0.40140 1.27051 1.47478 1.48916 1.49988 1.57414 1.71898 2.09217 2.55602 2.77131 3.21416 3.35413 3.44789 3.58400 3.63052 3.72584 3.90888 3.98240 4.02481 4.08699 4.14310 4.20160 4.28372 4.39063 4.42168 4.52937 4.59851 4.67197 4.70347 4.74917 4.82063 4.92486 4.93010 5.14231 5.19573 5.25599 5.31216 5.34354 5.47264 5.47616 5.50326 5.76960 6.21815 6.25666 6.44248 6.79115 7.13467 7.33176 8.08268 8.32009 9.27406 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033158 B = 0.001753 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.233938 B =15969.106430 C =16322.595375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 H 0.167 0.833 4 C 0.513 3.487 5 O -0.579 6.579 6 N -0.705 5.705 7 C 0.102 3.898 8 C 0.110 3.890 9 H 0.105 0.895 10 O -0.561 6.561 11 C 0.121 3.879 12 N -0.738 5.738 13 C -0.250 4.250 14 H 0.075 0.925 15 C -0.073 4.073 16 N -0.966 5.966 17 Si 0.974 3.026 18 H -0.287 1.287 19 H -0.294 1.294 20 H -0.270 1.270 21 C 0.042 3.958 22 C -0.205 4.205 23 C -0.153 4.153 24 C -0.080 4.080 25 C -0.137 4.137 26 C -0.091 4.091 27 C -0.129 4.129 28 C 0.020 3.980 29 O -0.206 6.206 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.418 0.582 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.385 0.615 37 H 0.029 0.971 38 H 0.031 0.969 39 H 0.378 0.622 40 H 0.252 0.748 41 H 0.186 0.814 42 H 0.149 0.851 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -1.504 32.855 33.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.049 4.049 3 H 0.184 0.816 4 C 0.300 3.700 5 O -0.458 6.458 6 N -0.357 5.357 7 C -0.023 4.023 8 C 0.050 3.950 9 H 0.123 0.877 10 O -0.367 6.367 11 C -0.007 4.007 12 N -0.381 5.381 13 C -0.382 4.382 14 H 0.093 0.907 15 C -0.266 4.266 16 N -0.616 5.616 17 Si 0.803 3.197 18 H -0.214 1.214 19 H -0.221 1.221 20 H -0.195 1.195 21 C -0.006 4.006 22 C -0.224 4.224 23 C -0.154 4.154 24 C -0.098 4.098 25 C -0.155 4.155 26 C -0.108 4.108 27 C -0.147 4.147 28 C -0.027 4.027 29 O -0.108 6.108 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.234 0.766 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.203 0.797 42 H 0.167 0.833 43 H 0.178 0.822 44 H 0.182 0.818 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.852 -2.337 32.661 32.868 hybrid contribution 0.281 -0.042 -1.421 1.449 sum 3.133 -2.379 31.240 31.487 Atomic orbital electron populations 1.21854 0.89431 1.03211 1.05543 1.20203 0.99689 1.00228 0.84793 0.81602 1.20867 0.79685 0.84185 0.85306 1.90747 1.39706 1.28113 1.87280 1.45719 1.53373 1.32301 1.04307 1.21852 0.99818 0.96663 0.83959 1.22071 0.98925 0.82887 0.91079 0.87733 1.86551 1.26555 1.27065 1.96530 1.21401 0.97255 0.95282 0.86732 1.42379 1.66686 1.27981 1.01092 1.19639 1.28440 1.05099 0.85046 0.90722 1.25575 1.01403 0.98041 1.01591 1.69828 1.43528 1.19237 1.29027 0.85139 0.77981 0.76943 0.79660 1.21384 1.22088 1.19528 1.21946 0.99496 0.81711 0.97399 1.22585 1.03795 1.01422 0.94613 1.20305 1.02794 0.93796 0.98528 1.20664 0.97331 0.99897 0.91924 1.21222 1.00587 0.92240 1.01450 1.21363 0.95081 1.00328 0.94069 1.20321 1.03879 0.94758 0.95734 1.20183 0.98147 0.97616 0.86782 1.83926 1.62318 1.28727 1.35791 0.93288 0.89026 0.88584 0.74378 0.91010 0.91036 0.76616 0.95310 0.95085 0.78957 0.93966 0.79659 0.83319 0.82170 0.81771 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.07 71.98 0.65 -1.16 16 2 C -0.03 -0.47 3.11 -12.29 -0.04 -0.51 16 3 H 0.17 1.46 8.08 -2.39 -0.02 1.44 16 4 C 0.51 12.25 7.15 87.66 0.63 12.88 16 5 O -0.58 -19.83 15.78 4.16 0.07 -19.76 16 6 N -0.70 -14.34 5.40 -463.06 -2.50 -16.84 16 7 C 0.10 2.50 5.31 86.38 0.46 2.96 16 8 C 0.11 3.13 3.09 30.60 0.09 3.23 16 9 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 10 O -0.56 -16.23 13.03 -148.98 -1.94 -18.17 16 11 C 0.12 4.52 5.92 86.38 0.51 5.04 16 12 N -0.74 -36.85 5.49 -343.46 -1.89 -38.73 16 13 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 14 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 15 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 16 N -0.97 -59.05 13.06 21.65 0.28 -58.76 16 17 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 C 0.04 0.96 5.12 24.72 0.13 1.09 16 22 C -0.21 -4.08 10.97 23.54 0.26 -3.83 16 23 C -0.15 -3.40 6.40 -20.21 -0.13 -3.53 16 24 C -0.08 -1.30 10.05 22.20 0.22 -1.07 16 25 C -0.14 -1.77 9.98 22.04 0.22 -1.55 16 26 C -0.09 -1.27 10.01 22.30 0.22 -1.05 16 27 C -0.13 -2.59 10.07 22.35 0.23 -2.36 16 28 C 0.02 0.51 7.42 22.99 0.17 0.68 16 29 O -0.21 -5.87 10.25 -1.82 -0.02 -5.89 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.10 0.83 7.56 -2.39 -0.02 0.81 16 33 H 0.42 6.44 7.89 -92.71 -0.73 5.71 16 34 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.38 9.25 9.05 -74.06 -0.67 8.58 16 37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.38 20.33 7.54 -92.71 -0.70 19.63 16 40 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 44 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 45 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -80.24 386.60 -0.10 -80.35 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -1.06 Total: 35.80 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.93 Total: -6.05 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -4.10 Total: -114.34 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -1.89 Total: -43.83 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -80.24 -0.10 -80.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272560080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.064 kcal (2) G-P(sol) polarization free energy of solvation -80.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds