Wall clock time and date at job start Tue Mar 31 2020 17:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 H 1.08999 * 109.47352 * 2 1 4 4 C 1.50702 * 109.47561 * 120.00555 * 2 1 3 5 5 O 1.21273 * 120.00560 * 119.99883 * 4 2 1 6 6 N 1.34782 * 119.99485 * 299.99900 * 4 2 1 7 7 C 1.46498 * 119.99736 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.47186 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.46787 * 59.99742 * 8 7 6 10 10 O 1.42898 * 109.46694 * 300.00197 * 8 7 6 11 11 C 1.52997 * 109.47275 * 179.97438 * 8 7 6 12 12 N 1.46498 * 109.47019 * 184.99715 * 11 8 7 13 13 C 1.36944 * 119.99972 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99736 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99901 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00149 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99555 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47204 * 89.99956 * 17 15 13 19 19 H 1.48506 * 109.46955 * 209.99663 * 17 15 13 20 20 H 1.48494 * 109.47330 * 329.99734 * 17 15 13 21 21 C 1.50705 * 109.47327 * 240.00377 * 2 1 3 22 22 C 1.33997 * 124.92353 * 119.99736 * 21 2 1 23 23 C 1.46785 * 106.18379 * 179.97438 * 22 21 2 24 24 C 1.39402 * 134.36782 * 179.97438 * 23 22 21 25 25 C 1.36738 * 119.71519 * 179.97438 * 24 23 22 26 26 C 1.38742 * 120.41803 * 0.02562 * 25 24 23 27 27 C 1.37855 * 120.68496 * 0.02562 * 26 25 24 28 28 C 1.38938 * 119.81787 * 359.97438 * 27 26 25 29 29 O 1.34451 * 124.92103 * 299.97730 * 21 2 1 30 30 H 1.09002 * 109.47411 * 299.99610 * 1 2 3 31 31 H 1.09002 * 109.47431 * 59.99642 * 1 2 3 32 32 H 1.08999 * 109.47352 * 179.97438 * 1 2 3 33 33 H 0.96994 * 120.00023 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47264 * 299.99683 * 7 6 4 35 35 H 1.08997 * 109.47468 * 60.00422 * 7 6 4 36 36 H 0.96700 * 113.99907 * 299.99593 * 10 8 7 37 37 H 1.08998 * 109.46971 * 304.99866 * 11 8 7 38 38 H 1.09005 * 109.47042 * 64.99774 * 11 8 7 39 39 H 0.97001 * 120.00375 * 359.97438 * 12 11 8 40 40 H 0.97000 * 119.99868 * 180.02562 * 16 15 13 41 41 H 1.07996 * 126.90761 * 0.02562 * 22 21 2 42 42 H 1.08001 * 120.14630 * 0.02892 * 24 23 22 43 43 H 1.08002 * 119.79100 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.66016 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.08968 * 179.70288 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1947 -0.9410 3.6506 8 6 1.6843 -0.2202 4.9000 9 1 0.5943 -0.2201 4.8996 10 8 2.1606 1.1271 4.9004 11 6 2.1933 -0.9422 6.1491 12 7 1.6088 -0.3248 7.3422 13 6 1.9210 -0.8069 8.5854 14 1 2.5985 -1.6420 8.6862 15 6 1.3668 -0.2223 9.7158 16 7 0.5416 0.7957 9.5929 17 14 1.7933 -0.8795 11.4116 18 1 2.9876 -0.1671 11.9326 19 1 0.6468 -0.6609 12.3299 20 1 2.0844 -2.3328 11.3204 21 6 2.0323 -0.7103 -1.2305 22 6 2.8059 -0.1563 -2.1740 23 6 3.0475 -1.2047 -3.1726 24 6 3.7590 -1.2652 -4.3698 25 6 3.7860 -2.4308 -5.0841 26 6 3.1096 -3.5518 -4.6249 27 6 2.3999 -3.5106 -3.4439 28 6 2.3597 -2.3361 -2.7027 29 8 1.7695 -1.9920 -1.5406 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.1494 0.5387 2.5436 34 1 1.8309 -1.9686 3.6505 35 1 3.2846 -0.9414 3.6508 36 1 3.1246 1.2034 4.9008 37 1 1.9046 -1.9923 6.1049 38 1 3.2797 -0.8657 6.1956 39 1 1.0007 0.4254 7.2517 40 1 0.1546 1.2044 10.3829 41 1 3.1776 0.8574 -2.1950 42 1 4.2875 -0.3954 -4.7312 43 1 4.3372 -2.4792 -6.0116 44 1 3.1388 -4.4661 -5.1992 45 1 1.8730 -4.3875 -3.0979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272560081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:24 Heat of formation + Delta-G solvation = -50.563756 kcal Electronic energy + Delta-G solvation = -27076.940488 eV Core-core repulsion = 23061.031534 eV Total energy + Delta-G solvation = -4015.908954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.74306 -40.00479 -38.17130 -37.65790 -34.71488 -34.37430 -34.01543 -32.64831 -31.32129 -30.67175 -29.34686 -28.72938 -25.81539 -24.80600 -23.27836 -22.77734 -22.06594 -21.49224 -21.40558 -20.16514 -17.90817 -17.61319 -17.19362 -16.77145 -16.56369 -16.29509 -15.96821 -15.75599 -15.30834 -14.88671 -14.49590 -14.40190 -14.15817 -13.94373 -13.74117 -13.54958 -13.33723 -13.02994 -12.94048 -12.60400 -12.51096 -12.39452 -12.33826 -12.02225 -11.96927 -11.84321 -11.20594 -10.98914 -10.83699 -10.66766 -10.41758 -10.20835 -10.05965 -9.83211 -9.53686 -9.18794 -8.92897 -8.87718 -8.42241 -6.96753 -5.78766 -3.08535 0.61573 1.10198 2.01777 2.38822 2.46539 3.01283 3.42195 3.44754 3.47357 3.49056 3.90958 4.35086 4.41025 4.52025 4.53799 4.59466 4.66004 4.68586 4.80173 4.83764 4.92535 5.01158 5.12526 5.19023 5.25561 5.29949 5.41449 5.53156 5.56576 5.58202 5.69232 5.75666 5.90616 5.93260 5.97257 6.13793 6.14439 6.15437 6.30468 6.38382 6.48045 6.63400 6.95915 7.33588 7.66293 7.87606 8.05050 8.39322 9.51100 10.07131 10.42824 11.43536 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032963 B = 0.001754 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.227297 B =15955.567554 C =16310.530768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 H 0.131 0.869 4 C 0.514 3.486 5 O -0.528 6.528 6 N -0.717 5.717 7 C 0.090 3.910 8 C 0.089 3.911 9 H 0.106 0.894 10 O -0.553 6.553 11 C 0.127 3.873 12 N -0.725 5.725 13 C -0.245 4.245 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.068 3.932 22 C -0.207 4.207 23 C -0.129 4.129 24 C -0.073 4.073 25 C -0.139 4.139 26 C -0.097 4.097 27 C -0.106 4.106 28 C 0.057 3.943 29 O -0.176 6.176 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.406 0.594 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.373 0.627 37 H 0.029 0.971 38 H 0.023 0.977 39 H 0.388 0.612 40 H 0.255 0.745 41 H 0.159 0.841 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 -1.572 -31.156 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.058 4.058 3 H 0.148 0.852 4 C 0.298 3.702 5 O -0.404 6.404 6 N -0.369 5.369 7 C -0.035 4.035 8 C 0.029 3.971 9 H 0.123 0.877 10 O -0.358 6.358 11 C -0.002 4.002 12 N -0.370 5.370 13 C -0.376 4.376 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.019 3.981 22 C -0.226 4.226 23 C -0.130 4.130 24 C -0.091 4.091 25 C -0.157 4.157 26 C -0.115 4.115 27 C -0.124 4.124 28 C 0.009 3.991 29 O -0.076 6.076 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.242 0.758 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.220 0.780 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.223 0.777 40 H 0.065 0.935 41 H 0.176 0.824 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.152 0.848 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.354 -2.451 -30.911 31.097 hybrid contribution 0.508 0.197 1.015 1.152 sum 2.862 -2.255 -29.896 30.117 Atomic orbital electron populations 1.21836 0.90796 1.04032 1.03806 1.20067 0.98708 0.99438 0.87570 0.85180 1.20262 0.80726 0.84846 0.84346 1.90767 1.37296 1.25776 1.86570 1.45849 1.53743 1.32248 1.05092 1.22128 0.99983 0.97208 0.84158 1.22401 0.99957 0.82449 0.92247 0.87660 1.86572 1.26765 1.25600 1.96833 1.21199 0.96405 0.95774 0.86801 1.42230 1.55424 1.39182 1.00198 1.19225 1.22608 1.12117 0.83626 0.91196 1.24759 0.99780 0.98378 0.97901 1.69675 1.34520 1.25072 1.28534 0.86175 0.77345 0.78218 0.84339 1.21674 1.21710 1.20748 1.21450 0.98455 0.81999 0.96193 1.22174 1.04637 1.00443 0.95308 1.19914 1.01982 0.93771 0.97302 1.20277 0.97697 0.98436 0.92658 1.20764 1.01293 0.92951 1.00681 1.20919 0.96673 0.98927 0.94985 1.19978 1.02717 0.94941 0.94789 1.19645 0.96941 0.96125 0.86372 1.83978 1.61682 1.27206 1.34770 0.90473 0.90677 0.91185 0.75847 0.90343 0.90984 0.77954 0.95353 0.95909 0.77732 0.93466 0.82388 0.85595 0.85428 0.84846 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.07 37.15 0.34 -0.69 16 2 C -0.04 -0.32 3.11 -92.93 -0.29 -0.61 16 3 H 0.13 0.75 8.08 -51.93 -0.42 0.33 16 4 C 0.51 6.25 7.15 -10.98 -0.08 6.17 16 5 O -0.53 -8.83 15.77 -2.39 -0.04 -8.87 16 6 N -0.72 -7.73 5.34 -60.29 -0.32 -8.05 16 7 C 0.09 1.13 5.34 -4.04 -0.02 1.11 16 8 C 0.09 1.31 3.09 -26.73 -0.08 1.23 16 9 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 10 O -0.55 -8.22 13.03 -35.23 -0.46 -8.68 16 11 C 0.13 2.41 5.90 -4.04 -0.02 2.39 16 12 N -0.73 -18.14 5.55 -59.91 -0.33 -18.47 16 13 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 14 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 17 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 C 0.07 0.76 5.13 -35.80 -0.18 0.58 16 22 C -0.21 -2.12 10.97 -37.62 -0.41 -2.53 16 23 C -0.13 -1.44 6.40 -105.16 -0.67 -2.11 16 24 C -0.07 -0.64 10.05 -39.69 -0.40 -1.04 16 25 C -0.14 -1.05 9.98 -39.94 -0.40 -1.45 16 26 C -0.10 -0.75 10.01 -39.54 -0.40 -1.15 16 27 C -0.11 -1.04 10.07 -39.46 -0.40 -1.44 16 28 C 0.06 0.70 7.42 -38.47 -0.29 0.41 16 29 O -0.18 -2.37 10.24 -4.04 -0.04 -2.42 16 30 H 0.08 0.42 7.57 -51.93 -0.39 0.03 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.41 3.57 7.77 -40.82 -0.32 3.26 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.37 4.60 9.05 45.56 0.41 5.01 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.39 10.36 7.67 -40.82 -0.31 10.05 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 41 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 386.58 15.07 5.83 5.83 Total: -1.00 -36.15 386.58 -8.87 -45.01 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.65 Total: 12.28 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.55 Total: -6.57 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.07 Total: -53.94 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.54 Total: -19.96 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.15 -8.87 -45.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272560081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.549 kcal (2) G-P(sol) polarization free energy of solvation -36.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds