Wall clock time and date at job start Tue Mar 31 2020 17:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 H 1.08999 * 109.47352 * 2 1 4 4 C 1.50702 * 109.47561 * 120.00555 * 2 1 3 5 5 O 1.21273 * 120.00560 * 119.99883 * 4 2 1 6 6 N 1.34782 * 119.99485 * 299.99900 * 4 2 1 7 7 C 1.46498 * 119.99736 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.47186 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.46787 * 59.99742 * 8 7 6 10 10 O 1.42898 * 109.46694 * 300.00197 * 8 7 6 11 11 C 1.52997 * 109.47275 * 179.97438 * 8 7 6 12 12 N 1.46498 * 109.47019 * 184.99715 * 11 8 7 13 13 C 1.36944 * 119.99972 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99736 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99901 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00149 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99555 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47204 * 89.99956 * 17 15 13 19 19 H 1.48506 * 109.46955 * 209.99663 * 17 15 13 20 20 H 1.48494 * 109.47330 * 329.99734 * 17 15 13 21 21 C 1.50705 * 109.47327 * 240.00377 * 2 1 3 22 22 C 1.33997 * 124.92353 * 119.99736 * 21 2 1 23 23 C 1.46785 * 106.18379 * 179.97438 * 22 21 2 24 24 C 1.39402 * 134.36782 * 179.97438 * 23 22 21 25 25 C 1.36738 * 119.71519 * 179.97438 * 24 23 22 26 26 C 1.38742 * 120.41803 * 0.02562 * 25 24 23 27 27 C 1.37855 * 120.68496 * 0.02562 * 26 25 24 28 28 C 1.38938 * 119.81787 * 359.97438 * 27 26 25 29 29 O 1.34451 * 124.92103 * 299.97730 * 21 2 1 30 30 H 1.09002 * 109.47411 * 299.99610 * 1 2 3 31 31 H 1.09002 * 109.47431 * 59.99642 * 1 2 3 32 32 H 1.08999 * 109.47352 * 179.97438 * 1 2 3 33 33 H 0.96994 * 120.00023 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47264 * 299.99683 * 7 6 4 35 35 H 1.08997 * 109.47468 * 60.00422 * 7 6 4 36 36 H 0.96700 * 113.99907 * 299.99593 * 10 8 7 37 37 H 1.08998 * 109.46971 * 304.99866 * 11 8 7 38 38 H 1.09005 * 109.47042 * 64.99774 * 11 8 7 39 39 H 0.97001 * 120.00375 * 359.97438 * 12 11 8 40 40 H 0.97000 * 119.99868 * 180.02562 * 16 15 13 41 41 H 1.07996 * 126.90761 * 0.02562 * 22 21 2 42 42 H 1.08001 * 120.14630 * 0.02892 * 24 23 22 43 43 H 1.08002 * 119.79100 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.66016 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.08968 * 179.70288 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1947 -0.9410 3.6506 8 6 1.6843 -0.2202 4.9000 9 1 0.5943 -0.2201 4.8996 10 8 2.1606 1.1271 4.9004 11 6 2.1933 -0.9422 6.1491 12 7 1.6088 -0.3248 7.3422 13 6 1.9210 -0.8069 8.5854 14 1 2.5985 -1.6420 8.6862 15 6 1.3668 -0.2223 9.7158 16 7 0.5416 0.7957 9.5929 17 14 1.7933 -0.8795 11.4116 18 1 2.9876 -0.1671 11.9326 19 1 0.6468 -0.6609 12.3299 20 1 2.0844 -2.3328 11.3204 21 6 2.0323 -0.7103 -1.2305 22 6 2.8059 -0.1563 -2.1740 23 6 3.0475 -1.2047 -3.1726 24 6 3.7590 -1.2652 -4.3698 25 6 3.7860 -2.4308 -5.0841 26 6 3.1096 -3.5518 -4.6249 27 6 2.3999 -3.5106 -3.4439 28 6 2.3597 -2.3361 -2.7027 29 8 1.7695 -1.9920 -1.5406 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.1494 0.5387 2.5436 34 1 1.8309 -1.9686 3.6505 35 1 3.2846 -0.9414 3.6508 36 1 3.1246 1.2034 4.9008 37 1 1.9046 -1.9923 6.1049 38 1 3.2797 -0.8657 6.1956 39 1 1.0007 0.4254 7.2517 40 1 0.1546 1.2044 10.3829 41 1 3.1776 0.8574 -2.1950 42 1 4.2875 -0.3954 -4.7312 43 1 4.3372 -2.4792 -6.0116 44 1 3.1388 -4.4661 -5.1992 45 1 1.8730 -4.3875 -3.0979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272560081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:23 Heat of formation + Delta-G solvation = -77.330787 kcal Electronic energy + Delta-G solvation = -27078.101193 eV Core-core repulsion = 23061.031534 eV Total energy + Delta-G solvation = -4017.069659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.49847 -40.98981 -39.05574 -38.71884 -36.10357 -35.56515 -35.13334 -33.38966 -33.15721 -31.34482 -30.64387 -29.56602 -27.24513 -25.75086 -24.52044 -23.85739 -22.93424 -22.77492 -22.22792 -21.07887 -19.27742 -18.72706 -18.33222 -17.79329 -17.42925 -17.25764 -17.02209 -16.66003 -16.41905 -16.25210 -15.83114 -15.44387 -15.11514 -14.95051 -14.88984 -14.65322 -14.38644 -14.14351 -14.01863 -13.83891 -13.49280 -13.23521 -13.18784 -12.98031 -12.95513 -12.76122 -12.63585 -12.58426 -12.16736 -11.97997 -11.85976 -11.81750 -11.22407 -11.09917 -10.98790 -10.79237 -10.19619 -9.58882 -9.12981 -9.01936 -7.95878 -5.25272 -0.07428 0.40174 1.27109 1.47415 1.48873 1.50091 1.57385 1.72064 2.09099 2.55509 2.77164 3.21475 3.35168 3.45821 3.57583 3.63390 3.72692 3.90989 3.98173 4.00936 4.08820 4.14394 4.20812 4.28311 4.38921 4.41993 4.52966 4.59819 4.67235 4.70359 4.74898 4.82089 4.92704 4.93082 5.14287 5.20078 5.25547 5.30649 5.34411 5.47350 5.47483 5.50353 5.77055 6.21945 6.25412 6.44709 6.79341 7.13805 7.32752 8.07615 8.31089 9.27144 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032963 B = 0.001754 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.227297 B =15955.567554 C =16310.530768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 H 0.167 0.833 4 C 0.513 3.487 5 O -0.579 6.579 6 N -0.704 5.704 7 C 0.102 3.898 8 C 0.111 3.889 9 H 0.103 0.897 10 O -0.560 6.560 11 C 0.121 3.879 12 N -0.739 5.739 13 C -0.251 4.251 14 H 0.075 0.925 15 C -0.074 4.074 16 N -0.966 5.966 17 Si 0.974 3.026 18 H -0.286 1.286 19 H -0.294 1.294 20 H -0.270 1.270 21 C 0.042 3.958 22 C -0.205 4.205 23 C -0.153 4.153 24 C -0.080 4.080 25 C -0.137 4.137 26 C -0.091 4.091 27 C -0.129 4.129 28 C 0.020 3.980 29 O -0.206 6.206 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.419 0.581 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.385 0.615 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.186 0.814 42 H 0.149 0.851 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 -1.133 -32.866 33.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.049 4.049 3 H 0.184 0.816 4 C 0.300 3.700 5 O -0.458 6.458 6 N -0.357 5.357 7 C -0.023 4.023 8 C 0.051 3.949 9 H 0.121 0.879 10 O -0.367 6.367 11 C -0.006 4.006 12 N -0.382 5.382 13 C -0.382 4.382 14 H 0.093 0.907 15 C -0.266 4.266 16 N -0.617 5.617 17 Si 0.803 3.197 18 H -0.213 1.213 19 H -0.221 1.221 20 H -0.195 1.195 21 C -0.006 4.006 22 C -0.224 4.224 23 C -0.154 4.154 24 C -0.098 4.098 25 C -0.155 4.155 26 C -0.108 4.108 27 C -0.147 4.147 28 C -0.027 4.027 29 O -0.108 6.108 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.257 0.743 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.234 0.766 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.204 0.796 42 H 0.167 0.833 43 H 0.178 0.822 44 H 0.182 0.818 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.261 -2.009 -32.649 32.873 hybrid contribution 0.298 0.000 1.409 1.440 sum 3.558 -2.009 -31.240 31.506 Atomic orbital electron populations 1.21850 0.89464 1.03196 1.05536 1.20203 0.99661 1.00241 0.84789 0.81577 1.20866 0.79695 0.84185 0.85303 1.90746 1.39712 1.28106 1.87275 1.45703 1.53397 1.32300 1.04271 1.21839 0.99867 0.96636 0.83980 1.22059 0.99622 0.82157 0.91094 0.87915 1.86552 1.28037 1.25349 1.96734 1.21410 0.96498 0.95991 0.86703 1.42397 1.55545 1.39063 1.01170 1.19641 1.21797 1.11764 0.85027 0.90697 1.25578 1.00336 0.99081 1.01625 1.69826 1.36066 1.26620 1.29139 0.85136 0.76756 0.78093 0.79719 1.21350 1.22091 1.19536 1.21951 0.99527 0.81662 0.97428 1.22583 1.03719 1.01433 0.94659 1.20305 1.02779 0.93801 0.98534 1.20665 0.97322 0.99900 0.91922 1.21222 1.00599 0.92222 1.01456 1.21363 0.95103 1.00329 0.94050 1.20322 1.03852 0.94753 0.95775 1.20186 0.98200 0.97612 0.86742 1.83925 1.62604 1.28574 1.35657 0.88615 0.89013 0.93310 0.74346 0.91075 0.90983 0.76565 0.95109 0.95210 0.79046 0.93958 0.79642 0.83309 0.82169 0.81777 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.07 71.98 0.65 -1.18 16 2 C -0.03 -0.47 3.11 -12.29 -0.04 -0.50 16 3 H 0.17 1.45 8.08 -2.39 -0.02 1.43 16 4 C 0.51 12.25 7.15 87.66 0.63 12.88 16 5 O -0.58 -19.83 15.77 4.60 0.07 -19.75 16 6 N -0.70 -14.35 5.34 -463.06 -2.47 -16.83 16 7 C 0.10 2.50 5.34 86.38 0.46 2.96 16 8 C 0.11 3.15 3.09 30.59 0.09 3.24 16 9 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 10 O -0.56 -15.88 13.03 -148.98 -1.94 -17.82 16 11 C 0.12 4.55 5.90 86.38 0.51 5.06 16 12 N -0.74 -36.91 5.55 -343.45 -1.91 -38.82 16 13 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 14 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 15 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 16 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 17 Si 0.97 46.05 29.55 68.60 2.03 48.07 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 19 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 C 0.04 0.96 5.13 24.72 0.13 1.08 16 22 C -0.21 -4.07 10.97 23.54 0.26 -3.81 16 23 C -0.15 -3.40 6.40 -20.21 -0.13 -3.53 16 24 C -0.08 -1.29 10.05 22.20 0.22 -1.07 16 25 C -0.14 -1.77 9.98 22.04 0.22 -1.55 16 26 C -0.09 -1.27 10.01 22.30 0.22 -1.05 16 27 C -0.13 -2.60 10.07 22.35 0.23 -2.37 16 28 C 0.02 0.51 7.42 22.99 0.17 0.68 16 29 O -0.21 -5.88 10.24 -1.29 -0.01 -5.90 16 30 H 0.10 0.84 7.57 -2.39 -0.02 0.82 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.42 6.51 7.77 -92.71 -0.72 5.79 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.39 8.88 9.05 -74.06 -0.67 8.21 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.38 20.29 7.67 -92.71 -0.71 19.58 16 40 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 44 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 45 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -80.24 386.58 -0.08 -80.32 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -1.06 Total: 35.56 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.93 Total: -6.05 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -4.10 Total: -114.44 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.88 Total: -43.47 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -80.24 -0.08 -80.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272560081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.990 kcal (2) G-P(sol) polarization free energy of solvation -80.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds