Wall clock time and date at job start Tue Mar 31 2020 17:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 O 1.21281 * 119.99736 * 240.00187 * 4 2 1 6 6 N 1.34779 * 120.00201 * 59.99469 * 4 2 1 7 7 C 1.46503 * 119.99606 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46575 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.47194 * 60.00272 * 8 7 6 10 10 O 1.42895 * 109.47621 * 299.99942 * 8 7 6 11 11 C 1.52997 * 109.47060 * 179.97438 * 8 7 6 12 12 N 1.46500 * 109.47520 * 185.00200 * 11 8 7 13 13 C 1.36932 * 120.00401 * 179.97438 * 12 11 8 14 14 H 1.08004 * 120.00018 * 0.02562 * 13 12 11 15 15 C 1.38813 * 120.00486 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99676 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00639 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46538 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47046 * 119.99875 * 17 15 13 20 20 H 1.48493 * 109.47060 * 240.00370 * 17 15 13 21 21 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 22 22 C 1.33990 * 124.92689 * 240.00124 * 21 2 1 23 23 C 1.46784 * 106.18740 * 179.97438 * 22 21 2 24 24 C 1.39405 * 134.37016 * 179.97438 * 23 22 21 25 25 C 1.36732 * 119.71714 * 179.97438 * 24 23 22 26 26 C 1.38743 * 120.41731 * 359.97438 * 25 24 23 27 27 C 1.37853 * 120.68625 * 0.03182 * 26 25 24 28 28 C 1.38943 * 119.81340 * 359.97129 * 27 26 25 29 29 O 1.34451 * 124.91783 * 59.70118 * 21 2 1 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 33 33 H 0.96991 * 119.99747 * 0.02562 * 6 4 2 34 34 H 1.08992 * 109.47080 * 299.99586 * 7 6 4 35 35 H 1.09001 * 109.47138 * 60.00172 * 7 6 4 36 36 H 0.96696 * 114.00034 * 300.00232 * 10 8 7 37 37 H 1.09004 * 109.47346 * 305.00346 * 11 8 7 38 38 H 1.09002 * 109.47196 * 65.00121 * 11 8 7 39 39 H 0.97004 * 119.99706 * 0.02562 * 12 11 8 40 40 H 0.97000 * 119.99910 * 179.97438 * 16 15 13 41 41 H 1.08006 * 126.90366 * 359.96516 * 22 21 2 42 42 H 1.08003 * 120.14270 * 359.97438 * 24 23 22 43 43 H 1.07998 * 119.79423 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.66163 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.09251 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1947 -0.9407 -3.6508 8 6 1.6842 -0.2197 -4.9000 9 1 2.0475 0.8080 -4.9003 10 8 0.2552 -0.2197 -4.8995 11 6 2.1943 -0.9408 -6.1492 12 7 1.8063 -0.1845 -7.3424 13 6 2.1557 -0.6400 -8.5855 14 1 2.7171 -1.5571 -8.6865 15 6 1.7877 0.0764 -9.7161 16 7 1.1031 1.1939 -9.5932 17 14 2.2638 -0.5453 -11.4121 18 1 3.0242 -1.8139 -11.2786 19 1 1.0370 -0.7861 -12.2134 20 1 3.1082 0.4693 -12.0922 21 6 2.0324 -0.7104 1.2304 22 6 2.8060 -0.1565 2.1739 23 6 3.0465 -1.2046 3.1731 24 6 3.7583 -1.2653 4.3701 25 6 3.7831 -2.4301 5.0857 26 6 3.1043 -3.5503 4.6279 27 6 2.3953 -3.5092 3.4464 28 6 2.3573 -2.3353 2.7040 29 8 1.7646 -1.9902 1.5435 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.1494 0.5390 -2.5435 34 1 3.2846 -0.9410 -3.6510 35 1 1.8310 -1.9682 -3.6506 36 1 -0.1381 -1.1031 -4.8992 37 1 3.2806 -1.0187 -6.1058 38 1 1.7600 -1.9395 -6.1951 39 1 1.3024 0.6395 -7.2517 40 1 0.8462 1.6947 -10.3832 41 1 3.1779 0.8573 2.1949 42 1 4.2880 -0.3959 4.7309 43 1 4.3338 -2.4784 6.0135 44 1 3.1325 -4.4642 5.2027 45 1 1.8708 -4.3869 3.0989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272560082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:28 Heat of formation + Delta-G solvation = -50.630463 kcal Electronic energy + Delta-G solvation = -27089.128653 eV Core-core repulsion = 23073.216807 eV Total energy + Delta-G solvation = -4015.911846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.74319 -40.00425 -38.17190 -37.65705 -34.71153 -34.37561 -34.01664 -32.64855 -31.32156 -30.67252 -29.34893 -28.72449 -25.81668 -24.80432 -23.28044 -22.77770 -22.06642 -21.49188 -21.40808 -20.16214 -17.91146 -17.61366 -17.19578 -16.76605 -16.56607 -16.25654 -16.04535 -15.77293 -15.15903 -14.96294 -14.50651 -14.40122 -14.18866 -13.96951 -13.67201 -13.56289 -13.34266 -13.01075 -12.93067 -12.63604 -12.50838 -12.42099 -12.29999 -12.01344 -11.98098 -11.83657 -11.20640 -10.99038 -10.85527 -10.66798 -10.41753 -10.17902 -10.05445 -9.83518 -9.53841 -9.18846 -8.93650 -8.87776 -8.42247 -6.96877 -5.79107 -3.08798 0.61593 1.10186 2.01882 2.38744 2.46259 3.01553 3.41694 3.44745 3.47385 3.49627 3.91075 4.34837 4.40519 4.52264 4.54502 4.60005 4.65859 4.68383 4.80299 4.83701 4.92152 5.01083 5.12558 5.19764 5.26458 5.30549 5.41640 5.52996 5.56493 5.58206 5.70067 5.75526 5.90672 5.93289 5.97197 6.13772 6.14442 6.15280 6.30353 6.38341 6.47834 6.63350 6.95797 7.33524 7.66634 7.87761 8.05005 8.38978 9.50851 10.06903 10.42597 11.43279 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033221 B = 0.001753 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.644320 B =15969.536586 C =16309.572198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 H 0.130 0.870 4 C 0.514 3.486 5 O -0.528 6.528 6 N -0.717 5.717 7 C 0.090 3.910 8 C 0.089 3.911 9 H 0.106 0.894 10 O -0.553 6.553 11 C 0.127 3.873 12 N -0.726 5.726 13 C -0.244 4.244 14 H 0.071 0.929 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.068 3.932 22 C -0.207 4.207 23 C -0.129 4.129 24 C -0.073 4.073 25 C -0.139 4.139 26 C -0.097 4.097 27 C -0.106 4.106 28 C 0.057 3.943 29 O -0.176 6.176 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.406 0.594 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.373 0.627 37 H 0.029 0.971 38 H 0.023 0.977 39 H 0.388 0.612 40 H 0.255 0.745 41 H 0.159 0.841 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 -2.971 31.172 31.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.058 4.058 3 H 0.148 0.852 4 C 0.298 3.702 5 O -0.404 6.404 6 N -0.369 5.369 7 C -0.035 4.035 8 C 0.029 3.971 9 H 0.123 0.877 10 O -0.358 6.358 11 C -0.002 4.002 12 N -0.370 5.370 13 C -0.375 4.375 14 H 0.089 0.911 15 C -0.209 4.209 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.019 3.981 22 C -0.226 4.226 23 C -0.130 4.130 24 C -0.091 4.091 25 C -0.157 4.157 26 C -0.115 4.115 27 C -0.124 4.124 28 C 0.009 3.991 29 O -0.077 6.077 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.242 0.758 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.221 0.779 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.223 0.777 40 H 0.065 0.935 41 H 0.176 0.824 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.152 0.848 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.153 -3.334 30.931 31.131 hybrid contribution -0.026 -0.170 -1.016 1.030 sum 1.127 -3.504 29.915 30.140 Atomic orbital electron populations 1.21837 0.90728 1.04028 1.03833 1.20069 0.98752 0.99410 0.87571 0.85220 1.20263 0.80695 0.84877 0.84348 1.90768 1.37293 1.25785 1.86576 1.45848 1.53603 1.32384 1.05092 1.22128 1.00324 0.96866 0.84156 1.22398 0.81425 1.00987 0.92241 0.87667 1.86569 1.18609 1.33743 1.96830 1.21200 0.97578 0.94604 0.86801 1.42235 1.66798 1.27805 1.00204 1.19269 1.28967 1.05653 0.83607 0.91138 1.24763 1.00806 0.97381 0.97910 1.69687 1.43163 1.16527 1.28423 0.86105 0.77610 0.77839 0.84550 1.20544 1.21807 1.21807 1.21442 0.98422 0.82041 0.96168 1.22174 1.04707 1.00440 0.95254 1.19911 1.01994 0.93760 0.97295 1.20277 0.97692 0.98437 0.92655 1.20762 1.01275 0.92971 1.00677 1.20919 0.96654 0.98931 0.95002 1.19977 1.02758 0.94943 0.94752 1.19645 0.96896 0.96131 0.86411 1.83978 1.61392 1.27370 1.34923 0.90362 0.91221 0.90725 0.75848 0.90344 0.90985 0.77946 0.95362 0.95897 0.77735 0.93515 0.82388 0.85593 0.85427 0.84846 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.07 37.16 0.34 -0.69 16 2 C -0.04 -0.32 3.11 -92.92 -0.29 -0.61 16 3 H 0.13 0.74 8.08 -51.93 -0.42 0.32 16 4 C 0.51 6.24 7.15 -10.99 -0.08 6.17 16 5 O -0.53 -8.83 15.78 -1.98 -0.03 -8.86 16 6 N -0.72 -7.72 5.34 -60.29 -0.32 -8.04 16 7 C 0.09 1.13 5.34 -4.04 -0.02 1.11 16 8 C 0.09 1.31 3.08 -26.73 -0.08 1.23 16 9 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 10 O -0.55 -8.22 13.03 -35.23 -0.46 -8.67 16 11 C 0.13 2.41 5.90 -4.04 -0.02 2.39 16 12 N -0.73 -18.13 5.55 -59.91 -0.33 -18.46 16 13 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 14 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 17 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C 0.07 0.77 5.12 -35.80 -0.18 0.58 16 22 C -0.21 -2.13 10.97 -37.62 -0.41 -2.54 16 23 C -0.13 -1.44 6.40 -105.16 -0.67 -2.11 16 24 C -0.07 -0.64 10.05 -39.69 -0.40 -1.04 16 25 C -0.14 -1.05 9.98 -39.94 -0.40 -1.45 16 26 C -0.10 -0.75 10.01 -39.54 -0.40 -1.15 16 27 C -0.11 -1.04 10.07 -39.46 -0.40 -1.44 16 28 C 0.06 0.70 7.42 -38.47 -0.29 0.41 16 29 O -0.18 -2.37 10.25 -3.64 -0.04 -2.41 16 30 H 0.08 0.44 7.56 -51.93 -0.39 0.05 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.41 3.56 7.77 -40.82 -0.32 3.25 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.37 4.62 9.05 45.56 0.41 5.04 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.39 10.36 7.67 -40.82 -0.31 10.04 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 41 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -36.16 386.60 -8.86 -45.01 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.65 Total: 12.25 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.55 Total: -6.57 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.07 Total: -53.92 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.53 Total: -19.94 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.16 -8.86 -45.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272560082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.618 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds