Wall clock time and date at job start Tue Mar 31 2020 17:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 O 1.21281 * 119.99736 * 240.00187 * 4 2 1 6 6 N 1.34779 * 120.00201 * 59.99469 * 4 2 1 7 7 C 1.46503 * 119.99606 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46575 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.47194 * 60.00272 * 8 7 6 10 10 O 1.42895 * 109.47621 * 299.99942 * 8 7 6 11 11 C 1.52997 * 109.47060 * 179.97438 * 8 7 6 12 12 N 1.46500 * 109.47520 * 185.00200 * 11 8 7 13 13 C 1.36932 * 120.00401 * 179.97438 * 12 11 8 14 14 H 1.08004 * 120.00018 * 0.02562 * 13 12 11 15 15 C 1.38813 * 120.00486 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99676 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00639 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46538 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47046 * 119.99875 * 17 15 13 20 20 H 1.48493 * 109.47060 * 240.00370 * 17 15 13 21 21 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 22 22 C 1.33990 * 124.92689 * 240.00124 * 21 2 1 23 23 C 1.46784 * 106.18740 * 179.97438 * 22 21 2 24 24 C 1.39405 * 134.37016 * 179.97438 * 23 22 21 25 25 C 1.36732 * 119.71714 * 179.97438 * 24 23 22 26 26 C 1.38743 * 120.41731 * 359.97438 * 25 24 23 27 27 C 1.37853 * 120.68625 * 0.03182 * 26 25 24 28 28 C 1.38943 * 119.81340 * 359.97129 * 27 26 25 29 29 O 1.34451 * 124.91783 * 59.70118 * 21 2 1 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 33 33 H 0.96991 * 119.99747 * 0.02562 * 6 4 2 34 34 H 1.08992 * 109.47080 * 299.99586 * 7 6 4 35 35 H 1.09001 * 109.47138 * 60.00172 * 7 6 4 36 36 H 0.96696 * 114.00034 * 300.00232 * 10 8 7 37 37 H 1.09004 * 109.47346 * 305.00346 * 11 8 7 38 38 H 1.09002 * 109.47196 * 65.00121 * 11 8 7 39 39 H 0.97004 * 119.99706 * 0.02562 * 12 11 8 40 40 H 0.97000 * 119.99910 * 179.97438 * 16 15 13 41 41 H 1.08006 * 126.90366 * 359.96516 * 22 21 2 42 42 H 1.08003 * 120.14270 * 359.97438 * 24 23 22 43 43 H 1.07998 * 119.79423 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.66163 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.09251 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1947 -0.9407 -3.6508 8 6 1.6842 -0.2197 -4.9000 9 1 2.0475 0.8080 -4.9003 10 8 0.2552 -0.2197 -4.8995 11 6 2.1943 -0.9408 -6.1492 12 7 1.8063 -0.1845 -7.3424 13 6 2.1557 -0.6400 -8.5855 14 1 2.7171 -1.5571 -8.6865 15 6 1.7877 0.0764 -9.7161 16 7 1.1031 1.1939 -9.5932 17 14 2.2638 -0.5453 -11.4121 18 1 3.0242 -1.8139 -11.2786 19 1 1.0370 -0.7861 -12.2134 20 1 3.1082 0.4693 -12.0922 21 6 2.0324 -0.7104 1.2304 22 6 2.8060 -0.1565 2.1739 23 6 3.0465 -1.2046 3.1731 24 6 3.7583 -1.2653 4.3701 25 6 3.7831 -2.4301 5.0857 26 6 3.1043 -3.5503 4.6279 27 6 2.3953 -3.5092 3.4464 28 6 2.3573 -2.3353 2.7040 29 8 1.7646 -1.9902 1.5435 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.1494 0.5390 -2.5435 34 1 3.2846 -0.9410 -3.6510 35 1 1.8310 -1.9682 -3.6506 36 1 -0.1381 -1.1031 -4.8992 37 1 3.2806 -1.0187 -6.1058 38 1 1.7600 -1.9395 -6.1951 39 1 1.3024 0.6395 -7.2517 40 1 0.8462 1.6947 -10.3832 41 1 3.1779 0.8573 2.1949 42 1 4.2880 -0.3959 4.7309 43 1 4.3338 -2.4784 6.0135 44 1 3.1325 -4.4642 5.2027 45 1 1.8708 -4.3869 3.0989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272560082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:27 Heat of formation + Delta-G solvation = -77.415331 kcal Electronic energy + Delta-G solvation = -27090.290132 eV Core-core repulsion = 23073.216807 eV Total energy + Delta-G solvation = -4017.073325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.49811 -40.98870 -39.05510 -38.71915 -36.10602 -35.56145 -35.13444 -33.39097 -33.15645 -31.34523 -30.64466 -29.56253 -27.24628 -25.75047 -24.52124 -23.85773 -22.93406 -22.77411 -22.22821 -21.07605 -19.28055 -18.72809 -18.33215 -17.79320 -17.42897 -17.22206 -17.08624 -16.66047 -16.43351 -16.14508 -15.87357 -15.47252 -15.11707 -14.93005 -14.91816 -14.67538 -14.28820 -14.15865 -14.03760 -13.88183 -13.45438 -13.24753 -13.19496 -12.98312 -12.94840 -12.79355 -12.63259 -12.57875 -12.12793 -11.96925 -11.86033 -11.81927 -11.22473 -11.10035 -10.99932 -10.79408 -10.19523 -9.58902 -9.13012 -9.02030 -7.96196 -5.25480 -0.07398 0.40190 1.27153 1.47434 1.47911 1.49938 1.58060 1.71901 2.09380 2.55289 2.77167 3.21510 3.34970 3.45193 3.57564 3.64475 3.72953 3.90419 3.98183 4.01180 4.09028 4.14475 4.20894 4.28342 4.38759 4.41863 4.52966 4.60145 4.67436 4.70423 4.76072 4.82354 4.92718 4.93051 5.14919 5.20133 5.25745 5.30740 5.34393 5.47273 5.47689 5.50370 5.76965 6.21826 6.25319 6.44739 6.78421 7.13821 7.32617 8.07464 8.30934 9.27069 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033221 B = 0.001753 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.644320 B =15969.536586 C =16309.572198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 H 0.167 0.833 4 C 0.513 3.487 5 O -0.579 6.579 6 N -0.704 5.704 7 C 0.102 3.898 8 C 0.110 3.890 9 H 0.105 0.895 10 O -0.560 6.560 11 C 0.121 3.879 12 N -0.739 5.739 13 C -0.249 4.249 14 H 0.075 0.925 15 C -0.074 4.074 16 N -0.966 5.966 17 Si 0.974 3.026 18 H -0.267 1.267 19 H -0.293 1.293 20 H -0.292 1.292 21 C 0.043 3.957 22 C -0.206 4.206 23 C -0.153 4.153 24 C -0.080 4.080 25 C -0.137 4.137 26 C -0.091 4.091 27 C -0.128 4.128 28 C 0.020 3.980 29 O -0.205 6.205 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.419 0.581 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.385 0.615 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.186 0.814 42 H 0.149 0.851 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 -2.762 32.890 33.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 H 0.184 0.816 4 C 0.300 3.700 5 O -0.459 6.459 6 N -0.357 5.357 7 C -0.023 4.023 8 C 0.050 3.950 9 H 0.122 0.878 10 O -0.367 6.367 11 C -0.006 4.006 12 N -0.382 5.382 13 C -0.381 4.381 14 H 0.093 0.907 15 C -0.267 4.267 16 N -0.617 5.617 17 Si 0.803 3.197 18 H -0.191 1.191 19 H -0.220 1.220 20 H -0.219 1.219 21 C -0.005 4.005 22 C -0.225 4.225 23 C -0.154 4.154 24 C -0.098 4.098 25 C -0.155 4.155 26 C -0.108 4.108 27 C -0.147 4.147 28 C -0.027 4.027 29 O -0.107 6.107 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.257 0.743 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.234 0.766 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.203 0.797 42 H 0.167 0.833 43 H 0.178 0.822 44 H 0.182 0.818 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.745 -3.137 32.676 32.873 hybrid contribution -0.178 -0.317 -1.413 1.459 sum 1.568 -3.454 31.263 31.493 Atomic orbital electron populations 1.21840 0.89381 1.03196 1.05487 1.20208 0.99710 1.00228 0.84793 0.81610 1.20865 0.79661 0.84218 0.85305 1.90748 1.39700 1.28126 1.87280 1.45702 1.53256 1.32435 1.04270 1.21841 0.99945 0.96559 0.83980 1.22070 0.81357 1.00448 0.91078 0.87769 1.86549 1.18497 1.34907 1.96734 1.21413 0.97815 0.94677 0.86705 1.42402 1.66688 1.27911 1.01173 1.19675 1.27950 1.05452 0.85010 0.90682 1.25578 1.01573 0.97889 1.01619 1.69834 1.44884 1.17906 1.29065 0.85070 0.77087 0.77626 0.79930 1.19148 1.21989 1.21931 1.21941 0.99476 0.81717 0.97389 1.22584 1.03818 1.01430 0.94632 1.20303 1.02801 0.93805 0.98524 1.20663 0.97338 0.99898 0.91935 1.21219 1.00587 0.92245 1.01448 1.21364 0.95084 1.00323 0.94076 1.20323 1.03874 0.94755 0.95716 1.20185 0.98144 0.97609 0.86784 1.83925 1.62303 1.28708 1.35794 0.88624 0.93294 0.89082 0.74344 0.90784 0.91275 0.76633 0.94997 0.95321 0.79041 0.93962 0.79674 0.83341 0.82181 0.81764 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.07 71.98 0.65 -1.15 16 2 C -0.03 -0.47 3.11 -12.29 -0.04 -0.51 16 3 H 0.17 1.45 8.08 -2.39 -0.02 1.43 16 4 C 0.51 12.24 7.15 87.66 0.63 12.87 16 5 O -0.58 -19.81 15.78 4.17 0.07 -19.75 16 6 N -0.70 -14.32 5.34 -463.06 -2.47 -16.79 16 7 C 0.10 2.49 5.34 86.38 0.46 2.95 16 8 C 0.11 3.13 3.08 30.59 0.09 3.23 16 9 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 10 O -0.56 -15.99 13.03 -148.98 -1.94 -17.93 16 11 C 0.12 4.54 5.90 86.38 0.51 5.05 16 12 N -0.74 -36.86 5.55 -343.45 -1.91 -38.77 16 13 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 14 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 15 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 16 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 17 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 C 0.04 0.97 5.12 24.72 0.13 1.09 16 22 C -0.21 -4.10 10.97 23.54 0.26 -3.85 16 23 C -0.15 -3.41 6.40 -20.21 -0.13 -3.54 16 24 C -0.08 -1.30 10.05 22.20 0.22 -1.08 16 25 C -0.14 -1.77 9.98 22.04 0.22 -1.55 16 26 C -0.09 -1.27 10.01 22.30 0.22 -1.05 16 27 C -0.13 -2.57 10.07 22.35 0.23 -2.35 16 28 C 0.02 0.51 7.42 22.99 0.17 0.68 16 29 O -0.21 -5.85 10.25 -1.79 -0.02 -5.87 16 30 H 0.10 0.86 7.56 -2.39 -0.02 0.85 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.42 6.49 7.77 -92.71 -0.72 5.77 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.38 9.06 9.05 -74.06 -0.67 8.39 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.38 20.27 7.67 -92.71 -0.71 19.56 16 40 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -80.17 386.60 -0.10 -80.27 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -1.06 Total: 35.59 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 4.93 Total: -6.03 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -4.10 Total: -114.37 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.89 Total: -43.55 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -80.17 -0.10 -80.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272560082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.853 kcal (2) G-P(sol) polarization free energy of solvation -80.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds