Wall clock time and date at job start Tue Mar 31 2020 17:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 O 1.21283 * 120.00262 * 120.00231 * 4 2 1 6 6 N 1.34777 * 119.99928 * 299.72137 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.52997 * 109.47555 * 180.02562 * 7 6 4 9 9 H 1.08992 * 109.47101 * 305.00652 * 8 7 6 10 10 O 1.42908 * 109.46701 * 65.00138 * 8 7 6 11 11 C 1.53002 * 109.47339 * 185.00128 * 8 7 6 12 12 N 1.46499 * 109.46822 * 180.02562 * 11 8 7 13 13 C 1.36937 * 119.99692 * 179.97438 * 12 11 8 14 14 H 1.08000 * 120.00088 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00000 * 179.97438 * 13 12 11 16 16 N 1.31616 * 119.99980 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00213 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46915 * 60.00242 * 17 15 13 19 19 H 1.48502 * 109.47274 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47235 * 300.00458 * 17 15 13 21 21 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 22 22 C 1.33998 * 124.91799 * 119.71993 * 21 2 1 23 23 C 1.46788 * 106.18122 * 179.90071 * 22 21 2 24 24 C 1.39401 * 134.36880 * 180.12269 * 23 22 21 25 25 C 1.36740 * 119.71928 * 180.26660 * 24 23 22 26 26 C 1.38746 * 120.41312 * 359.97438 * 25 24 23 27 27 C 1.37845 * 120.68542 * 0.02562 * 26 25 24 28 28 C 1.38946 * 119.82076 * 359.97438 * 27 26 25 29 29 O 1.34450 * 124.92593 * 300.02717 * 21 2 1 30 30 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 31 31 H 1.09003 * 109.47307 * 60.00755 * 1 2 3 32 32 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 34 34 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 35 35 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 36 36 H 0.96700 * 113.99815 * 60.00342 * 10 8 7 37 37 H 1.09000 * 109.47257 * 300.00018 * 11 8 7 38 38 H 1.08997 * 109.46706 * 60.00439 * 11 8 7 39 39 H 0.97003 * 120.00588 * 0.02562 * 12 11 8 40 40 H 0.97005 * 119.99734 * 179.97438 * 16 15 13 41 41 H 1.07999 * 126.90980 * 0.03206 * 22 21 2 42 42 H 1.08004 * 120.14265 * 0.28271 * 24 23 22 43 43 H 1.07995 * 119.79122 * 180.02562 * 25 24 23 44 44 H 1.07995 * 119.65438 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.08707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7112 -0.2466 2.4546 7 6 2.2044 -0.9336 3.6508 8 6 1.6985 -0.2094 4.9000 9 1 1.9858 0.8409 4.8525 10 8 0.2746 -0.3112 4.9657 11 6 2.3137 -0.8506 6.1455 12 7 1.8287 -0.1575 7.3416 13 6 2.2462 -0.5595 8.5823 14 1 2.9332 -1.3871 8.6791 15 6 1.7871 0.0975 9.7157 16 7 0.9502 1.1065 9.5978 17 14 2.3571 -0.4502 11.4082 18 1 3.8345 -0.3282 11.4964 19 1 1.7264 0.4065 12.4443 20 1 1.9633 -1.8649 11.6293 21 6 2.0323 -0.7105 -1.2304 22 6 2.8016 -0.1551 -2.1765 23 6 3.0465 -1.2048 -3.1729 24 6 3.7584 -1.2655 -4.3700 25 6 3.7841 -2.4308 -5.0850 26 6 3.1071 -3.5515 -4.6260 27 6 2.3979 -3.5103 -3.4447 28 6 2.3589 -2.3361 -2.7029 29 8 1.7688 -1.9919 -1.5408 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.1535 0.5421 2.5436 34 1 1.8416 -1.9614 3.6551 35 1 3.2944 -0.9332 3.6465 36 1 -0.0531 -1.2199 5.0102 37 1 2.0263 -1.9010 6.1931 38 1 3.3997 -0.7729 6.0954 39 1 1.2113 0.5856 7.2548 40 1 0.6292 1.5654 10.3898 41 1 3.1693 0.8601 -2.2001 42 1 4.2876 -0.3960 -4.7310 43 1 4.3356 -2.4793 -6.0122 44 1 3.1353 -4.4654 -5.2008 45 1 1.8748 -4.3885 -3.0963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272560083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:32 Heat of formation + Delta-G solvation = -50.353732 kcal Electronic energy + Delta-G solvation = -27085.686552 eV Core-core repulsion = 23069.786706 eV Total energy + Delta-G solvation = -4015.899846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.74399 -40.00222 -38.16985 -37.64816 -34.71468 -34.37938 -33.99922 -32.64873 -31.30539 -30.67165 -29.34841 -28.72329 -25.81485 -24.80219 -23.27896 -22.77732 -22.07055 -21.49374 -21.39360 -20.15704 -17.90828 -17.61366 -17.18459 -16.76655 -16.56169 -16.25454 -16.05761 -15.76725 -15.11887 -14.97990 -14.50648 -14.40333 -14.19392 -13.95554 -13.66396 -13.57028 -13.34517 -13.02776 -12.92525 -12.61144 -12.50384 -12.41463 -12.30088 -12.01435 -11.98166 -11.83110 -11.20611 -10.97882 -10.82133 -10.65950 -10.41719 -10.22519 -10.06829 -9.82556 -9.52411 -9.18985 -8.92036 -8.87696 -8.42253 -6.96317 -5.78113 -3.07932 0.61613 1.10180 2.01880 2.38657 2.46334 3.01487 3.42971 3.44753 3.47306 3.48419 3.91027 4.34870 4.40577 4.52283 4.54498 4.59993 4.65937 4.68915 4.80285 4.83849 4.92145 5.01089 5.12582 5.20934 5.26401 5.30486 5.41596 5.53335 5.56481 5.57474 5.70129 5.75552 5.91018 5.93339 5.97229 6.13777 6.14460 6.16280 6.30429 6.38360 6.48066 6.64079 6.95862 7.32950 7.66160 7.89746 8.04699 8.40039 9.51760 10.07995 10.43983 11.44042 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033336 B = 0.001752 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.735773 B =15982.395455 C =16316.956718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 H 0.130 0.870 4 C 0.514 3.486 5 O -0.528 6.528 6 N -0.717 5.717 7 C 0.090 3.910 8 C 0.090 3.910 9 H 0.105 0.895 10 O -0.552 6.552 11 C 0.126 3.874 12 N -0.725 5.725 13 C -0.246 4.246 14 H 0.069 0.931 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.068 3.932 22 C -0.207 4.207 23 C -0.129 4.129 24 C -0.073 4.073 25 C -0.139 4.139 26 C -0.097 4.097 27 C -0.106 4.106 28 C 0.057 3.943 29 O -0.176 6.176 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.406 0.594 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.374 0.626 37 H 0.023 0.977 38 H 0.029 0.971 39 H 0.389 0.611 40 H 0.256 0.744 41 H 0.159 0.841 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 -2.782 -31.112 31.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.058 4.058 3 H 0.148 0.852 4 C 0.298 3.702 5 O -0.404 6.404 6 N -0.369 5.369 7 C -0.034 4.034 8 C 0.030 3.970 9 H 0.122 0.878 10 O -0.357 6.357 11 C -0.002 4.002 12 N -0.370 5.370 13 C -0.377 4.377 14 H 0.087 0.913 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.019 3.981 22 C -0.226 4.226 23 C -0.130 4.130 24 C -0.091 4.091 25 C -0.157 4.157 26 C -0.115 4.115 27 C -0.124 4.124 28 C 0.009 3.991 29 O -0.076 6.076 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.241 0.759 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.221 0.779 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.224 0.776 40 H 0.066 0.934 41 H 0.176 0.824 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.152 0.848 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.388 -3.115 -30.888 31.075 hybrid contribution 0.045 -0.181 1.024 1.041 sum 1.433 -3.297 -29.863 30.079 Atomic orbital electron populations 1.21836 0.90731 1.04040 1.03827 1.20070 0.98752 0.99402 0.87577 0.85214 1.20264 0.80694 0.84873 0.84348 1.90769 1.37265 1.25798 1.86576 1.45866 1.53565 1.32379 1.05133 1.22141 1.00244 0.96920 0.84138 1.22384 0.81549 1.00858 0.92245 0.87755 1.86570 1.19928 1.32630 1.96567 1.21191 0.96859 0.95340 0.86848 1.42212 1.55547 1.39111 1.00141 1.19176 1.22195 1.12601 0.83688 0.91269 1.24757 0.99807 0.98337 0.97881 1.69668 1.35825 1.23741 1.28550 0.86252 0.78046 0.77717 0.84048 1.21239 1.21628 1.21247 1.21445 0.98490 0.81975 0.96168 1.22176 1.04748 1.00388 0.95272 1.19912 1.01980 0.93746 0.97325 1.20278 0.97699 0.98444 0.92642 1.20765 1.01288 0.92960 1.00676 1.20916 0.96659 0.98928 0.95001 1.19976 1.02745 0.94937 0.94772 1.19644 0.96911 0.96145 0.86387 1.83976 1.61617 1.27258 1.34786 0.90368 0.90727 0.91216 0.75917 0.90972 0.90352 0.77882 0.95948 0.95379 0.77641 0.93420 0.82387 0.85594 0.85427 0.84847 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.07 37.16 0.34 -0.70 16 2 C -0.04 -0.32 3.11 -92.92 -0.29 -0.61 16 3 H 0.13 0.74 8.08 -51.93 -0.42 0.32 16 4 C 0.51 6.25 7.15 -10.98 -0.08 6.17 16 5 O -0.53 -8.83 15.77 -2.34 -0.04 -8.87 16 6 N -0.72 -7.73 5.40 -60.29 -0.33 -8.06 16 7 C 0.09 1.14 5.31 -4.04 -0.02 1.11 16 8 C 0.09 1.31 3.09 -26.73 -0.08 1.23 16 9 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 10 O -0.55 -8.36 13.03 -35.23 -0.46 -8.82 16 11 C 0.13 2.40 5.92 -4.04 -0.02 2.38 16 12 N -0.73 -18.12 5.49 -59.91 -0.33 -18.45 16 13 C -0.25 -6.86 9.99 -15.06 -0.15 -7.01 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 17 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.07 0.77 5.13 -35.80 -0.18 0.58 16 22 C -0.21 -2.13 10.97 -37.62 -0.41 -2.54 16 23 C -0.13 -1.44 6.40 -105.16 -0.67 -2.12 16 24 C -0.07 -0.64 10.05 -39.69 -0.40 -1.04 16 25 C -0.14 -1.05 9.98 -39.94 -0.40 -1.45 16 26 C -0.10 -0.75 10.01 -39.54 -0.40 -1.15 16 27 C -0.11 -1.04 10.07 -39.46 -0.40 -1.44 16 28 C 0.06 0.70 7.42 -38.47 -0.29 0.41 16 29 O -0.18 -2.37 10.24 -3.96 -0.04 -2.41 16 30 H 0.08 0.44 7.57 -51.93 -0.39 0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.41 3.54 7.90 -40.82 -0.32 3.21 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.37 4.79 9.05 45.56 0.41 5.20 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.39 10.39 7.54 -40.82 -0.31 10.08 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 41 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -36.13 386.60 -8.87 -44.99 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.65 Total: 12.45 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -3.55 Total: -6.59 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.07 Total: -53.91 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.54 Total: -20.10 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.13 -8.87 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272560083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.362 kcal (2) G-P(sol) polarization free energy of solvation -36.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds