Wall clock time and date at job start Tue Mar 31 2020 17:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 O 1.21283 * 120.00262 * 120.00231 * 4 2 1 6 6 N 1.34777 * 119.99928 * 299.72137 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.52997 * 109.47555 * 180.02562 * 7 6 4 9 9 H 1.08992 * 109.47101 * 305.00652 * 8 7 6 10 10 O 1.42908 * 109.46701 * 65.00138 * 8 7 6 11 11 C 1.53002 * 109.47339 * 185.00128 * 8 7 6 12 12 N 1.46499 * 109.46822 * 180.02562 * 11 8 7 13 13 C 1.36937 * 119.99692 * 179.97438 * 12 11 8 14 14 H 1.08000 * 120.00088 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00000 * 179.97438 * 13 12 11 16 16 N 1.31616 * 119.99980 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00213 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46915 * 60.00242 * 17 15 13 19 19 H 1.48502 * 109.47274 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47235 * 300.00458 * 17 15 13 21 21 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 22 22 C 1.33998 * 124.91799 * 119.71993 * 21 2 1 23 23 C 1.46788 * 106.18122 * 179.90071 * 22 21 2 24 24 C 1.39401 * 134.36880 * 180.12269 * 23 22 21 25 25 C 1.36740 * 119.71928 * 180.26660 * 24 23 22 26 26 C 1.38746 * 120.41312 * 359.97438 * 25 24 23 27 27 C 1.37845 * 120.68542 * 0.02562 * 26 25 24 28 28 C 1.38946 * 119.82076 * 359.97438 * 27 26 25 29 29 O 1.34450 * 124.92593 * 300.02717 * 21 2 1 30 30 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 31 31 H 1.09003 * 109.47307 * 60.00755 * 1 2 3 32 32 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 34 34 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 35 35 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 36 36 H 0.96700 * 113.99815 * 60.00342 * 10 8 7 37 37 H 1.09000 * 109.47257 * 300.00018 * 11 8 7 38 38 H 1.08997 * 109.46706 * 60.00439 * 11 8 7 39 39 H 0.97003 * 120.00588 * 0.02562 * 12 11 8 40 40 H 0.97005 * 119.99734 * 179.97438 * 16 15 13 41 41 H 1.07999 * 126.90980 * 0.03206 * 22 21 2 42 42 H 1.08004 * 120.14265 * 0.28271 * 24 23 22 43 43 H 1.07995 * 119.79122 * 180.02562 * 25 24 23 44 44 H 1.07995 * 119.65438 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.08707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7112 -0.2466 2.4546 7 6 2.2044 -0.9336 3.6508 8 6 1.6985 -0.2094 4.9000 9 1 1.9858 0.8409 4.8525 10 8 0.2746 -0.3112 4.9657 11 6 2.3137 -0.8506 6.1455 12 7 1.8287 -0.1575 7.3416 13 6 2.2462 -0.5595 8.5823 14 1 2.9332 -1.3871 8.6791 15 6 1.7871 0.0975 9.7157 16 7 0.9502 1.1065 9.5978 17 14 2.3571 -0.4502 11.4082 18 1 3.8345 -0.3282 11.4964 19 1 1.7264 0.4065 12.4443 20 1 1.9633 -1.8649 11.6293 21 6 2.0323 -0.7105 -1.2304 22 6 2.8016 -0.1551 -2.1765 23 6 3.0465 -1.2048 -3.1729 24 6 3.7584 -1.2655 -4.3700 25 6 3.7841 -2.4308 -5.0850 26 6 3.1071 -3.5515 -4.6260 27 6 2.3979 -3.5103 -3.4447 28 6 2.3589 -2.3361 -2.7029 29 8 1.7688 -1.9919 -1.5408 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.1535 0.5421 2.5436 34 1 1.8416 -1.9614 3.6551 35 1 3.2944 -0.9332 3.6465 36 1 -0.0531 -1.2199 5.0102 37 1 2.0263 -1.9010 6.1931 38 1 3.3997 -0.7729 6.0954 39 1 1.2113 0.5856 7.2548 40 1 0.6292 1.5654 10.3898 41 1 3.1693 0.8601 -2.2001 42 1 4.2876 -0.3960 -4.7310 43 1 4.3356 -2.4793 -6.0122 44 1 3.1353 -4.4654 -5.2008 45 1 1.8748 -4.3885 -3.0963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272560083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:31 Heat of formation + Delta-G solvation = -77.101488 kcal Electronic energy + Delta-G solvation = -27086.846422 eV Core-core repulsion = 23069.786706 eV Total energy + Delta-G solvation = -4017.059716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.49925 -40.98701 -39.05307 -38.71985 -36.08482 -35.56717 -35.14753 -33.38867 -33.14392 -31.34475 -30.64350 -29.56248 -27.24278 -25.74945 -24.51869 -23.85704 -22.92788 -22.77469 -22.22898 -21.07445 -19.27333 -18.72463 -18.33250 -17.79087 -17.43679 -17.20661 -17.09906 -16.65965 -16.42557 -16.12231 -15.89063 -15.47325 -15.11990 -14.93845 -14.90701 -14.67470 -14.29422 -14.13706 -14.03602 -13.88579 -13.45516 -13.24294 -13.19391 -12.98046 -12.94281 -12.72817 -12.63365 -12.58206 -12.20704 -11.97973 -11.86023 -11.80807 -11.22804 -11.09907 -10.97394 -10.78577 -10.19709 -9.58869 -9.13025 -9.01364 -7.95143 -5.24560 -0.07403 0.40144 1.27173 1.47522 1.49914 1.50293 1.56569 1.71872 2.09425 2.55930 2.77142 3.21443 3.35401 3.44356 3.58327 3.64134 3.72842 3.90559 3.98224 4.02647 4.09053 4.14411 4.20322 4.28309 4.39157 4.42223 4.52960 4.60113 4.67325 4.70431 4.75862 4.82187 4.92608 4.93013 5.14801 5.19678 5.25764 5.31310 5.34389 5.47282 5.47534 5.50336 5.76980 6.21876 6.25842 6.44310 6.78079 7.13513 7.33415 8.08591 8.32347 9.27573 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033336 B = 0.001752 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.735773 B =15982.395455 C =16316.956718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 H 0.167 0.833 4 C 0.513 3.487 5 O -0.579 6.579 6 N -0.704 5.704 7 C 0.102 3.898 8 C 0.110 3.890 9 H 0.106 0.894 10 O -0.561 6.561 11 C 0.121 3.879 12 N -0.738 5.738 13 C -0.252 4.252 14 H 0.075 0.925 15 C -0.073 4.073 16 N -0.966 5.966 17 Si 0.974 3.026 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.279 1.279 21 C 0.042 3.958 22 C -0.206 4.206 23 C -0.153 4.153 24 C -0.080 4.080 25 C -0.137 4.137 26 C -0.091 4.091 27 C -0.128 4.128 28 C 0.020 3.980 29 O -0.205 6.205 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.418 0.582 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.384 0.616 37 H 0.028 0.972 38 H 0.032 0.968 39 H 0.378 0.622 40 H 0.252 0.748 41 H 0.186 0.814 42 H 0.149 0.851 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -2.462 -32.816 32.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 H 0.184 0.816 4 C 0.299 3.701 5 O -0.458 6.458 6 N -0.357 5.357 7 C -0.023 4.023 8 C 0.050 3.950 9 H 0.124 0.876 10 O -0.367 6.367 11 C -0.007 4.007 12 N -0.381 5.381 13 C -0.384 4.384 14 H 0.093 0.907 15 C -0.266 4.266 16 N -0.616 5.616 17 Si 0.803 3.197 18 H -0.204 1.204 19 H -0.220 1.220 20 H -0.205 1.205 21 C -0.005 4.005 22 C -0.224 4.224 23 C -0.154 4.154 24 C -0.098 4.098 25 C -0.155 4.155 26 C -0.108 4.108 27 C -0.147 4.147 28 C -0.027 4.027 29 O -0.107 6.107 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.256 0.744 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.233 0.767 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.204 0.796 42 H 0.167 0.833 43 H 0.178 0.822 44 H 0.182 0.818 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.108 -2.804 -32.620 32.808 hybrid contribution -0.137 -0.363 1.417 1.469 sum 1.971 -3.166 -31.203 31.425 Atomic orbital electron populations 1.21839 0.89412 1.03182 1.05489 1.20209 0.99686 1.00238 0.84792 0.81562 1.20868 0.79662 0.84212 0.85310 1.90748 1.39680 1.28139 1.87283 1.45719 1.53226 1.32444 1.04308 1.21852 0.99906 0.96570 0.83967 1.22082 0.81189 1.00642 0.91068 0.87593 1.86550 1.19931 1.33747 1.96496 1.21401 0.97159 0.95362 0.86740 1.42373 1.55421 1.39220 1.01119 1.19601 1.21482 1.12183 0.85090 0.90741 1.25577 1.00552 0.98854 1.01595 1.69822 1.37489 1.25182 1.29103 0.85210 0.77752 0.77318 0.79436 1.20393 1.22047 1.20467 1.21947 0.99558 0.81645 0.97399 1.22585 1.03836 1.01386 0.94632 1.20305 1.02784 0.93789 0.98557 1.20665 0.97338 0.99906 0.91919 1.21222 1.00599 0.92234 1.01446 1.21361 0.95088 1.00324 0.94073 1.20321 1.03866 0.94749 0.95743 1.20185 0.98165 0.97627 0.86756 1.83923 1.62531 1.28612 1.35665 0.88633 0.89065 0.93333 0.74377 0.91337 0.90728 0.76689 0.95435 0.94982 0.78956 0.93964 0.79648 0.83332 0.82178 0.81770 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.07 71.98 0.65 -1.17 16 2 C -0.03 -0.47 3.11 -12.29 -0.04 -0.51 16 3 H 0.17 1.43 8.08 -2.39 -0.02 1.41 16 4 C 0.51 12.25 7.15 87.66 0.63 12.88 16 5 O -0.58 -19.84 15.77 4.51 0.07 -19.77 16 6 N -0.70 -14.34 5.40 -463.06 -2.50 -16.84 16 7 C 0.10 2.50 5.31 86.38 0.46 2.96 16 8 C 0.11 3.13 3.09 30.59 0.09 3.22 16 9 H 0.11 3.02 8.14 -2.39 -0.02 3.01 16 10 O -0.56 -16.39 13.03 -148.98 -1.94 -18.33 16 11 C 0.12 4.53 5.92 86.38 0.51 5.04 16 12 N -0.74 -36.85 5.49 -343.46 -1.89 -38.73 16 13 C -0.25 -14.02 9.99 84.03 0.84 -13.19 16 14 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 15 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 16 N -0.97 -59.02 13.06 21.65 0.28 -58.74 16 17 Si 0.97 46.00 29.55 68.60 2.03 48.02 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 C 0.04 0.96 5.13 24.72 0.13 1.09 16 22 C -0.21 -4.09 10.97 23.54 0.26 -3.83 16 23 C -0.15 -3.41 6.40 -20.21 -0.13 -3.54 16 24 C -0.08 -1.30 10.05 22.20 0.22 -1.08 16 25 C -0.14 -1.77 9.98 22.04 0.22 -1.55 16 26 C -0.09 -1.27 10.01 22.30 0.22 -1.05 16 27 C -0.13 -2.58 10.07 22.35 0.23 -2.36 16 28 C 0.02 0.51 7.42 22.99 0.17 0.68 16 29 O -0.21 -5.86 10.24 -1.31 -0.01 -5.88 16 30 H 0.09 0.87 7.57 -2.39 -0.02 0.85 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.42 6.43 7.90 -92.71 -0.73 5.70 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.38 9.46 9.05 -74.06 -0.67 8.79 16 37 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.38 20.33 7.54 -92.71 -0.70 19.63 16 40 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 41 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 45 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -80.13 386.60 -0.10 -80.23 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -1.06 Total: 36.16 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 4.93 Total: -6.13 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -4.10 Total: -114.31 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.88 Total: -43.98 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -80.13 -0.10 -80.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272560083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.127 kcal (2) G-P(sol) polarization free energy of solvation -80.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds