Wall clock time and date at job start Tue Mar 31 2020 17:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47486 * 2 1 4 4 C 1.52997 * 109.47382 * 239.99303 * 2 1 3 5 5 C 1.53002 * 117.49867 * 128.62141 * 4 2 1 6 6 C 1.52999 * 60.00115 * 252.51396 * 5 4 2 7 7 N 1.46507 * 109.46701 * 119.99261 * 2 1 3 8 8 C 1.46499 * 120.00019 * 60.00752 * 7 2 1 9 9 C 1.34774 * 119.99866 * 239.99751 * 7 2 1 10 10 O 1.21364 * 120.00081 * 3.37288 * 9 7 2 11 11 C 1.49316 * 119.99698 * 183.36998 * 9 7 2 12 12 O 1.21387 * 120.00179 * 354.28542 * 11 9 7 13 13 N 1.34779 * 119.99879 * 174.56176 * 11 9 7 14 14 C 1.39744 * 120.00069 * 184.69526 * 13 11 9 15 15 C 1.38999 * 120.00620 * 323.76882 * 14 13 11 16 16 C 1.37968 * 119.99501 * 179.79214 * 15 14 13 17 17 C 1.38938 * 120.00541 * 0.48626 * 16 15 14 18 18 O 1.35755 * 119.99763 * 179.72766 * 17 16 15 19 19 C 1.34802 * 117.00149 * 185.60589 * 18 17 16 20 20 H 1.07991 * 120.00198 * 5.46782 * 19 18 17 21 21 C 1.38658 * 119.99543 * 185.46872 * 19 18 17 22 22 N 1.31557 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99733 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47165 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47080 * 119.99975 * 23 21 19 26 26 H 1.48492 * 109.47413 * 240.00359 * 23 21 19 27 27 C 1.38947 * 120.01091 * 359.74615 * 17 16 15 28 28 C 1.37959 * 120.00765 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47036 * 60.00422 * 1 2 3 30 30 H 1.09003 * 109.47486 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47298 * 300.00712 * 1 2 3 32 32 H 1.08999 * 115.55044 * 274.33671 * 4 2 1 33 33 H 1.08994 * 117.49733 * 0.02562 * 5 4 2 34 34 H 1.09004 * 117.49698 * 145.01735 * 5 4 2 35 35 H 1.09002 * 117.49509 * 252.50830 * 6 5 4 36 36 H 1.08998 * 117.51726 * 107.48622 * 6 5 4 37 37 H 1.09001 * 109.46368 * 264.17391 * 8 7 2 38 38 H 1.08999 * 109.46964 * 24.16316 * 8 7 2 39 39 H 1.08993 * 109.47479 * 144.17131 * 8 7 2 40 40 H 0.96998 * 120.00316 * 4.69712 * 13 11 9 41 41 H 1.07998 * 120.00052 * 0.02562 * 15 14 13 42 42 H 1.07991 * 119.99825 * 180.23126 * 16 15 14 43 43 H 0.97005 * 119.99790 * 180.02562 * 22 21 19 44 44 H 1.07995 * 119.99117 * 180.02562 * 27 17 16 45 45 H 1.07999 * 120.00254 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.0742 0.0050 -2.1116 6 6 1.6358 -0.1497 -2.6095 7 7 2.0182 -0.6905 1.1963 8 6 1.6644 -2.0931 1.4283 9 6 2.7931 -0.0354 2.0834 10 8 3.0359 1.1428 1.9231 11 6 3.3526 -0.7593 3.2634 12 8 3.0270 -1.9083 3.4810 13 7 4.2150 -0.1352 4.0901 14 6 4.8143 -0.8408 5.1369 15 6 4.0961 -1.8164 5.8184 16 6 4.6894 -2.5160 6.8490 17 6 6.0014 -2.2383 7.2123 18 8 6.5832 -2.9228 8.2301 19 6 7.8149 -2.5269 8.6086 20 1 8.2577 -1.6456 8.1688 21 6 8.5132 -3.2512 9.5627 22 7 7.9738 -4.3251 10.0980 23 14 10.2203 -2.7030 10.0868 24 1 10.5969 -1.4756 9.3404 25 1 10.2225 -2.4161 11.5437 26 1 11.1983 -3.7811 9.7931 27 6 6.7179 -1.2597 6.5344 28 6 6.1267 -0.5632 5.5007 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.1266 -1.8046 -1.1640 33 1 3.3914 0.9965 -1.7889 34 1 3.8417 -0.6004 -2.5939 35 1 1.4570 -0.8568 -3.4196 36 1 1.0062 0.7400 -2.6147 37 1 0.7965 -2.1448 2.0857 38 1 1.4286 -2.5703 0.4771 39 1 2.5046 -2.6075 1.8945 40 1 4.4196 0.8038 3.9585 41 1 3.0749 -2.0295 5.5387 42 1 4.1327 -3.2765 7.3760 43 1 8.4622 -4.8317 10.7658 44 1 7.7378 -1.0444 6.8168 45 1 6.6836 0.1977 4.9741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317921417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:11 Heat of formation + Delta-G solvation = -23.108099 kcal Electronic energy + Delta-G solvation = -27598.006981 eV Core-core repulsion = 23583.288594 eV Total energy + Delta-G solvation = -4014.718387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.11441 -39.59203 -38.65831 -37.89954 -36.72050 -35.56629 -33.95320 -32.23766 -31.12891 -30.28451 -28.35859 -27.20373 -25.77895 -25.22444 -23.66019 -22.65654 -22.32692 -21.32434 -20.27033 -19.72118 -18.18953 -17.97406 -17.46597 -17.14687 -16.36351 -16.14858 -15.95667 -15.11555 -14.92586 -14.62830 -14.51925 -14.08724 -14.02364 -13.65201 -13.57434 -13.37269 -13.10085 -12.89766 -12.78227 -12.70710 -12.50120 -12.37862 -11.84388 -11.79876 -11.63360 -11.59502 -11.44652 -11.17253 -11.10821 -10.82432 -10.69891 -10.45646 -10.43524 -9.80438 -9.43683 -9.24508 -8.97072 -8.77109 -8.27066 -7.02764 -6.49726 -4.07311 1.25826 2.11347 2.13964 2.30710 3.08907 3.11600 3.17218 3.19641 3.30618 3.52184 3.93143 4.15976 4.33735 4.48532 4.52100 4.56159 4.78691 4.94248 4.94773 4.99880 5.05941 5.23796 5.24768 5.31914 5.41173 5.51140 5.51233 5.55520 5.67400 5.70966 5.73412 5.75325 5.87939 6.08499 6.11609 6.13965 6.23399 6.72611 6.73218 6.79954 6.91555 7.06382 7.16044 7.30428 7.43070 7.66438 7.71869 7.94661 8.09075 8.95618 9.64960 10.67980 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029620 B = 0.002036 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.088011 B =13750.824233 C =14039.659029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.103 0.897 4 C -0.169 4.169 5 C -0.176 4.176 6 C -0.170 4.170 7 N -0.579 5.579 8 C 0.061 3.939 9 C 0.511 3.489 10 O -0.527 6.527 11 C 0.498 3.502 12 O -0.504 6.504 13 N -0.624 5.624 14 C 0.022 3.978 15 C -0.062 4.062 16 C -0.180 4.180 17 C 0.151 3.849 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.220 4.220 28 C -0.081 4.081 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.413 0.587 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.270 0.730 44 H 0.133 0.867 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 8.155 -21.258 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.121 0.879 4 C -0.188 4.188 5 C -0.213 4.213 6 C -0.207 4.207 7 N -0.312 5.312 8 C -0.080 4.080 9 C 0.294 3.706 10 O -0.403 6.403 11 C 0.280 3.720 12 O -0.380 6.380 13 N -0.269 5.269 14 C -0.070 4.070 15 C -0.082 4.082 16 C -0.200 4.200 17 C 0.096 3.904 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.240 4.240 28 C -0.101 4.101 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.250 0.750 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.080 0.920 44 H 0.151 0.849 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.323 7.588 -20.886 25.409 hybrid contribution 1.002 0.637 0.069 1.189 sum -11.321 8.225 -20.817 25.083 Atomic orbital electron populations 1.22093 0.94007 1.02843 1.02588 1.20736 0.94313 0.97121 0.81829 0.87872 1.22633 1.04909 0.99915 0.91356 1.23051 0.92535 1.02222 1.03465 1.22938 0.98301 1.03200 0.96288 1.47700 1.48466 1.13584 1.21435 1.22431 1.03972 0.80106 1.01527 1.20176 0.79469 0.86879 0.84048 1.90734 1.58911 1.15271 1.75407 1.19986 0.81420 0.86756 0.83869 1.90671 1.58197 1.17015 1.72125 1.42873 1.42589 1.14006 1.27440 1.17234 0.93320 1.02178 0.94252 1.20708 0.99259 0.94887 0.93334 1.20126 0.93683 1.04765 1.01435 1.19471 0.92221 0.90858 0.87833 1.83995 1.31043 1.50878 1.41670 1.21384 0.91129 1.11390 1.22883 0.88924 1.25318 0.99772 0.95363 0.96116 1.70049 1.37683 1.15558 1.26065 0.85633 0.80218 0.78733 0.78769 1.19054 1.20111 1.20115 1.20990 1.01598 1.01335 1.00069 1.20522 0.92062 0.99819 0.97666 0.91084 0.91858 0.92037 0.87188 0.88490 0.88672 0.88537 0.88525 0.92045 0.91589 0.87117 0.75030 0.85321 0.85963 0.91968 0.84925 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.03 37.16 0.34 -0.74 16 2 C 0.16 1.41 2.86 -67.93 -0.19 1.22 16 3 H 0.10 1.04 6.66 -51.93 -0.35 0.69 16 4 C -0.17 -1.25 5.12 -90.62 -0.46 -1.72 16 5 C -0.18 -1.28 10.18 -26.73 -0.27 -1.55 16 6 C -0.17 -0.99 9.73 -26.73 -0.26 -1.25 16 7 N -0.58 -6.14 2.76 -174.50 -0.48 -6.62 16 8 C 0.06 0.58 8.52 59.85 0.51 1.09 16 9 C 0.51 6.70 7.73 -11.65 -0.09 6.61 16 10 O -0.53 -7.64 15.82 5.48 0.09 -7.55 16 11 C 0.50 7.25 7.61 -11.65 -0.09 7.16 16 12 O -0.50 -8.02 10.62 5.46 0.06 -7.96 16 13 N -0.62 -9.19 5.32 -10.27 -0.05 -9.24 16 14 C 0.02 0.39 6.28 -83.69 -0.53 -0.13 16 15 C -0.06 -1.17 8.68 -39.40 -0.34 -1.52 16 16 C -0.18 -3.83 9.98 -39.42 -0.39 -4.23 16 17 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 18 O -0.17 -4.85 9.75 0.11 0.00 -4.85 16 19 C -0.39 -10.71 9.44 30.89 0.29 -10.42 16 20 H 0.09 2.33 5.28 -52.49 -0.28 2.05 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 22 N -0.86 -24.85 13.67 55.48 0.76 -24.09 16 23 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 C -0.22 -4.63 9.13 -39.42 -0.36 -4.99 16 28 C -0.08 -1.44 9.96 -39.40 -0.39 -1.83 16 29 H 0.07 0.38 7.29 -51.93 -0.38 0.00 16 30 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.11 0.81 6.67 -51.93 -0.35 0.46 16 33 H 0.10 0.75 8.05 -51.93 -0.42 0.34 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.50 7.61 -51.93 -0.39 0.10 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.47 6.51 -51.93 -0.34 0.13 16 39 H 0.11 1.27 5.35 -51.94 -0.28 1.00 16 40 H 0.41 5.24 8.30 -40.82 -0.34 4.90 16 41 H 0.13 2.31 6.29 -52.49 -0.33 1.98 16 42 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.13 2.77 5.70 -52.49 -0.30 2.47 16 45 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -31.22 373.61 -7.44 -38.66 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.82 Total: 8.92 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.60 Total: -8.03 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.22 Total: -39.95 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.15 Total: -20.36 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.22 -7.44 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317921417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.552 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds