Wall clock time and date at job start Tue Mar 31 2020 17:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47486 * 2 1 4 4 C 1.52997 * 109.47382 * 239.99303 * 2 1 3 5 5 C 1.53002 * 117.49867 * 128.62141 * 4 2 1 6 6 C 1.52999 * 60.00115 * 252.51396 * 5 4 2 7 7 N 1.46507 * 109.46701 * 119.99261 * 2 1 3 8 8 C 1.46499 * 120.00019 * 60.00752 * 7 2 1 9 9 C 1.34774 * 119.99866 * 239.99751 * 7 2 1 10 10 O 1.21364 * 120.00081 * 3.37288 * 9 7 2 11 11 C 1.49316 * 119.99698 * 183.36998 * 9 7 2 12 12 O 1.21387 * 120.00179 * 354.28542 * 11 9 7 13 13 N 1.34779 * 119.99879 * 174.56176 * 11 9 7 14 14 C 1.39744 * 120.00069 * 184.69526 * 13 11 9 15 15 C 1.38999 * 120.00620 * 323.76882 * 14 13 11 16 16 C 1.37968 * 119.99501 * 179.79214 * 15 14 13 17 17 C 1.38938 * 120.00541 * 0.48626 * 16 15 14 18 18 O 1.35755 * 119.99763 * 179.72766 * 17 16 15 19 19 C 1.34802 * 117.00149 * 185.60589 * 18 17 16 20 20 H 1.07991 * 120.00198 * 5.46782 * 19 18 17 21 21 C 1.38658 * 119.99543 * 185.46872 * 19 18 17 22 22 N 1.31557 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99733 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47165 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47080 * 119.99975 * 23 21 19 26 26 H 1.48492 * 109.47413 * 240.00359 * 23 21 19 27 27 C 1.38947 * 120.01091 * 359.74615 * 17 16 15 28 28 C 1.37959 * 120.00765 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47036 * 60.00422 * 1 2 3 30 30 H 1.09003 * 109.47486 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47298 * 300.00712 * 1 2 3 32 32 H 1.08999 * 115.55044 * 274.33671 * 4 2 1 33 33 H 1.08994 * 117.49733 * 0.02562 * 5 4 2 34 34 H 1.09004 * 117.49698 * 145.01735 * 5 4 2 35 35 H 1.09002 * 117.49509 * 252.50830 * 6 5 4 36 36 H 1.08998 * 117.51726 * 107.48622 * 6 5 4 37 37 H 1.09001 * 109.46368 * 264.17391 * 8 7 2 38 38 H 1.08999 * 109.46964 * 24.16316 * 8 7 2 39 39 H 1.08993 * 109.47479 * 144.17131 * 8 7 2 40 40 H 0.96998 * 120.00316 * 4.69712 * 13 11 9 41 41 H 1.07998 * 120.00052 * 0.02562 * 15 14 13 42 42 H 1.07991 * 119.99825 * 180.23126 * 16 15 14 43 43 H 0.97005 * 119.99790 * 180.02562 * 22 21 19 44 44 H 1.07995 * 119.99117 * 180.02562 * 27 17 16 45 45 H 1.07999 * 120.00254 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.0742 0.0050 -2.1116 6 6 1.6358 -0.1497 -2.6095 7 7 2.0182 -0.6905 1.1963 8 6 1.6644 -2.0931 1.4283 9 6 2.7931 -0.0354 2.0834 10 8 3.0359 1.1428 1.9231 11 6 3.3526 -0.7593 3.2634 12 8 3.0270 -1.9083 3.4810 13 7 4.2150 -0.1352 4.0901 14 6 4.8143 -0.8408 5.1369 15 6 4.0961 -1.8164 5.8184 16 6 4.6894 -2.5160 6.8490 17 6 6.0014 -2.2383 7.2123 18 8 6.5832 -2.9228 8.2301 19 6 7.8149 -2.5269 8.6086 20 1 8.2577 -1.6456 8.1688 21 6 8.5132 -3.2512 9.5627 22 7 7.9738 -4.3251 10.0980 23 14 10.2203 -2.7030 10.0868 24 1 10.5969 -1.4756 9.3404 25 1 10.2225 -2.4161 11.5437 26 1 11.1983 -3.7811 9.7931 27 6 6.7179 -1.2597 6.5344 28 6 6.1267 -0.5632 5.5007 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.1266 -1.8046 -1.1640 33 1 3.3914 0.9965 -1.7889 34 1 3.8417 -0.6004 -2.5939 35 1 1.4570 -0.8568 -3.4196 36 1 1.0062 0.7400 -2.6147 37 1 0.7965 -2.1448 2.0857 38 1 1.4286 -2.5703 0.4771 39 1 2.5046 -2.6075 1.8945 40 1 4.4196 0.8038 3.9585 41 1 3.0749 -2.0295 5.5387 42 1 4.1327 -3.2765 7.3760 43 1 8.4622 -4.8317 10.7658 44 1 7.7378 -1.0444 6.8168 45 1 6.6836 0.1977 4.9741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317921417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:10 Heat of formation + Delta-G solvation = -42.277886 kcal Electronic energy + Delta-G solvation = -27598.838245 eV Core-core repulsion = 23583.288594 eV Total energy + Delta-G solvation = -4015.549651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.24996 -40.94136 -40.05605 -38.75396 -38.26522 -36.50682 -35.31828 -34.16431 -31.94443 -31.78561 -29.89873 -28.07652 -27.44112 -26.39684 -24.62531 -23.92251 -23.16359 -22.72752 -21.46342 -20.51013 -19.89474 -19.20014 -18.90248 -18.40275 -17.68911 -17.28986 -16.90102 -16.40023 -16.17286 -16.05558 -15.61575 -15.50504 -15.23119 -15.13451 -14.79268 -14.56471 -14.32840 -14.12932 -13.87446 -13.66682 -13.51717 -13.34364 -13.25001 -13.14697 -12.95210 -12.75107 -12.49898 -12.34625 -12.32446 -12.07801 -11.87293 -11.44813 -11.35610 -11.08625 -10.98915 -10.64582 -10.42149 -9.88953 -9.83704 -8.70083 -8.46615 -6.13498 0.05319 0.50854 0.69266 1.16870 1.37741 1.45444 1.55873 2.02832 2.18445 2.34976 2.79448 2.87906 3.13511 3.21163 3.48561 3.59281 3.92201 4.02280 4.03083 4.10488 4.16073 4.27576 4.33577 4.41265 4.46952 4.51903 4.61267 4.70776 4.74457 4.81751 4.92746 5.00190 5.02017 5.04249 5.12738 5.14988 5.25037 5.25741 5.29998 5.33797 5.40658 5.51435 5.64220 5.88053 6.01566 6.06612 6.19826 6.62257 6.87015 6.98049 7.77281 8.76540 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029620 B = 0.002036 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.088011 B =13750.824233 C =14039.659029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.160 3.840 3 H 0.088 0.912 4 C -0.176 4.176 5 C -0.190 4.190 6 C -0.150 4.150 7 N -0.570 5.570 8 C 0.061 3.939 9 C 0.512 3.488 10 O -0.544 6.544 11 C 0.500 3.500 12 O -0.516 6.516 13 N -0.621 5.621 14 C 0.050 3.950 15 C -0.063 4.063 16 C -0.187 4.187 17 C 0.114 3.886 18 O -0.227 6.227 19 C -0.412 4.412 20 H 0.106 0.894 21 C -0.024 4.024 22 N -0.919 5.919 23 Si 1.019 2.981 24 H -0.248 1.248 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.221 4.221 28 C -0.073 4.073 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.427 0.573 41 H 0.141 0.859 42 H 0.119 0.881 43 H 0.273 0.727 44 H 0.133 0.867 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 9.960 -24.287 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.058 3.942 3 H 0.106 0.894 4 C -0.195 4.195 5 C -0.227 4.227 6 C -0.188 4.188 7 N -0.301 5.301 8 C -0.080 4.080 9 C 0.294 3.706 10 O -0.422 6.422 11 C 0.283 3.717 12 O -0.392 6.392 13 N -0.268 5.268 14 C -0.043 4.043 15 C -0.083 4.083 16 C -0.207 4.207 17 C 0.063 3.937 18 O -0.133 6.133 19 C -0.488 4.488 20 H 0.124 0.876 21 C -0.222 4.222 22 N -0.557 5.557 23 Si 0.839 3.161 24 H -0.171 1.171 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.241 4.241 28 C -0.093 4.093 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.266 0.734 41 H 0.159 0.841 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.150 0.850 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.012 9.428 -23.994 28.878 hybrid contribution 0.904 0.184 0.667 1.138 sum -12.109 9.612 -23.327 27.985 Atomic orbital electron populations 1.22073 0.92297 1.03597 1.03053 1.20902 0.95561 0.96287 0.81411 0.89353 1.22592 1.05568 0.99889 0.91427 1.23090 0.93562 1.01856 1.04165 1.23030 0.96952 1.03448 0.95346 1.47848 1.47061 1.13988 1.21252 1.22446 1.03175 0.79304 1.03064 1.19833 0.80130 0.86623 0.83964 1.90736 1.59966 1.15749 1.75755 1.20354 0.80672 0.86604 0.84100 1.90691 1.58363 1.17684 1.72466 1.42822 1.42663 1.14583 1.26771 1.17343 0.93047 1.00451 0.93476 1.20844 0.99815 0.94975 0.92635 1.20274 0.93158 1.05151 1.02106 1.19936 0.93290 0.92081 0.88406 1.83961 1.31934 1.53109 1.44282 1.21894 0.91296 1.12146 1.23420 0.87630 1.26613 1.04300 0.95316 0.95926 1.70196 1.40001 1.17700 1.27822 0.84511 0.74258 0.78879 0.78470 1.17149 1.19526 1.19544 1.21113 1.01623 1.00828 1.00494 1.20835 0.92157 0.99800 0.96494 0.89259 0.90923 0.92978 0.86845 0.89411 0.88444 0.87153 0.87610 0.91578 0.88845 0.89068 0.73450 0.84137 0.86329 0.91836 0.84959 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.03 71.98 0.65 -1.00 16 2 C 0.16 2.42 2.86 44.99 0.13 2.55 16 3 H 0.09 1.64 6.66 -2.39 -0.02 1.62 16 4 C -0.18 -2.14 5.12 -10.79 -0.06 -2.20 16 5 C -0.19 -2.39 10.18 30.59 0.31 -2.08 16 6 C -0.15 -1.30 9.73 30.59 0.30 -1.00 16 7 N -0.57 -10.88 2.76 -824.34 -2.28 -13.16 16 8 C 0.06 1.02 8.52 127.77 1.09 2.11 16 9 C 0.51 12.46 7.73 87.23 0.67 13.14 16 10 O -0.54 -14.82 15.82 -3.29 -0.05 -14.88 16 11 C 0.50 13.57 7.61 87.23 0.66 14.23 16 12 O -0.52 -15.55 10.62 -3.36 -0.04 -15.59 16 13 N -0.62 -16.72 5.32 -304.74 -1.62 -18.34 16 14 C 0.05 1.65 6.28 38.24 0.24 1.89 16 15 C -0.06 -2.33 8.68 22.39 0.19 -2.13 16 16 C -0.19 -8.15 9.98 22.37 0.22 -7.93 16 17 C 0.11 5.60 6.65 22.61 0.15 5.75 16 18 O -0.23 -13.43 9.75 -22.51 -0.22 -13.65 16 19 C -0.41 -23.41 9.44 67.92 0.64 -22.77 16 20 H 0.11 5.43 5.28 -2.92 -0.02 5.41 16 21 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 22 N -0.92 -55.93 13.67 21.61 0.30 -55.64 16 23 Si 1.02 42.10 29.55 68.60 2.03 44.13 16 24 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 27 C -0.22 -9.24 9.13 22.37 0.20 -9.04 16 28 C -0.07 -2.44 9.96 22.38 0.22 -2.22 16 29 H 0.09 0.66 7.29 -2.38 -0.02 0.64 16 30 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 31 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.11 1.32 6.67 -2.39 -0.02 1.30 16 33 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 34 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.74 7.61 -2.39 -0.02 0.72 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.04 6.51 -2.39 -0.02 1.03 16 39 H 0.09 1.95 5.35 -2.51 -0.01 1.93 16 40 H 0.43 9.55 8.30 -92.71 -0.77 8.79 16 41 H 0.14 4.88 6.29 -2.91 -0.02 4.86 16 42 H 0.12 5.12 8.06 -2.92 -0.02 5.10 16 43 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 44 H 0.13 5.49 5.70 -2.91 -0.02 5.48 16 45 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -71.42 373.61 4.49 -66.93 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.27 Total: 31.78 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 6.10 Total: -11.59 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -3.60 Total: -87.14 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.31 Total: -44.11 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -71.42 4.49 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317921417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.649 kcal (2) G-P(sol) polarization free energy of solvation -71.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds