Wall clock time and date at job start Tue Mar 31 2020 17:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.53784 * 2 1 4 4 C 1.54883 * 110.48588 * 237.38620 * 2 1 3 5 5 C 1.54892 * 102.74967 * 203.38036 * 4 2 1 6 6 C 1.54266 * 104.19199 * 37.94417 * 5 4 2 7 7 C 1.53870 * 106.60097 * 336.38792 * 6 5 4 8 8 H 1.09003 * 110.07337 * 119.31062 * 7 6 5 9 9 N 1.46502 * 110.03591 * 240.72140 * 7 6 5 10 10 C 1.34786 * 119.99441 * 272.16787 * 9 7 6 11 11 O 1.21358 * 120.00402 * 359.97438 * 10 9 7 12 12 C 1.49322 * 119.99399 * 179.97438 * 10 9 7 13 13 O 1.21382 * 120.00158 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99356 * 179.97438 * 12 10 9 15 15 C 1.39741 * 119.99631 * 185.44791 * 14 12 10 16 16 C 1.39004 * 120.00644 * 214.72811 * 15 14 12 17 17 C 1.37969 * 119.98933 * 179.97438 * 16 15 14 18 18 C 1.38935 * 120.00957 * 0.02562 * 17 16 15 19 19 O 1.35759 * 119.99440 * 179.97438 * 18 17 16 20 20 C 1.34803 * 116.99572 * 354.39989 * 19 18 17 21 21 H 1.07997 * 120.00736 * 354.64687 * 20 19 18 22 22 C 1.38659 * 119.99999 * 174.64003 * 20 19 18 23 23 N 1.31564 * 119.99440 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00304 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46886 * 90.00423 * 24 22 20 26 26 H 1.48495 * 109.47467 * 210.00336 * 24 22 20 27 27 H 1.48501 * 109.47106 * 330.00334 * 24 22 20 28 28 C 1.38933 * 120.01494 * 0.02562 * 18 17 16 29 29 C 1.37965 * 120.00679 * 359.97438 * 28 18 17 30 30 H 1.09006 * 109.46905 * 297.39016 * 1 2 3 31 31 H 1.09003 * 109.47309 * 57.38688 * 1 2 3 32 32 H 1.08993 * 109.47636 * 177.38794 * 1 2 3 33 33 H 1.09001 * 110.75668 * 321.69952 * 4 2 1 34 34 H 1.09003 * 110.76013 * 85.06525 * 4 2 1 35 35 H 1.09004 * 110.48431 * 156.62074 * 5 4 2 36 36 H 1.09000 * 110.48339 * 279.12997 * 5 4 2 37 37 H 1.09005 * 110.03042 * 217.10355 * 6 5 4 38 38 H 1.08995 * 110.03569 * 95.67683 * 6 5 4 39 39 H 0.96993 * 120.00382 * 92.16097 * 9 7 6 40 40 H 0.96996 * 120.00722 * 5.45297 * 14 12 10 41 41 H 1.07995 * 120.00562 * 0.02562 * 16 15 14 42 42 H 1.07998 * 119.99183 * 180.28066 * 17 16 15 43 43 H 0.97000 * 119.99306 * 179.97438 * 23 22 20 44 44 H 1.07997 * 119.99969 * 179.97438 * 28 18 17 45 45 H 1.08005 * 120.00699 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0721 -0.7820 -1.2221 5 6 3.4907 -1.1980 -0.7599 6 6 3.3164 -1.5406 0.7341 7 6 2.0699 -0.7788 1.2173 8 1 1.3172 -1.4816 1.5747 9 7 2.4344 0.1528 2.2876 10 6 2.4431 -0.2637 3.5694 11 8 2.1485 -1.4101 3.8371 12 6 2.8152 0.6857 4.6602 13 8 3.1103 1.8323 4.3925 14 7 2.8234 0.2694 5.9421 15 6 3.0599 1.1837 6.9721 16 6 3.7609 0.7882 8.1054 17 6 3.9946 1.6913 9.1219 18 6 3.5292 2.9958 9.0130 19 8 3.7589 3.8841 10.0136 20 6 4.3411 3.4083 11.1325 21 1 4.5237 2.3491 11.2378 22 6 4.7057 4.2789 12.1483 23 7 4.4830 5.5692 12.0201 24 14 5.5118 3.6197 13.6990 25 1 6.9861 3.6033 13.5219 26 1 5.1611 4.4920 14.8485 27 1 5.0291 2.2397 13.9595 28 6 2.8277 3.3912 7.8809 29 6 2.5935 2.4886 6.8640 30 1 -0.3633 0.4728 0.9125 31 1 -0.3634 0.5539 -0.8656 32 1 -0.3634 -1.0265 -0.0468 33 1 1.4579 -1.6600 -1.4222 34 1 2.1251 -0.1382 -2.1001 35 1 3.8315 -2.0723 -1.3146 36 1 4.1902 -0.3715 -0.8849 37 1 4.1927 -1.2172 1.2960 38 1 3.1691 -2.6135 0.8564 39 1 2.6696 1.0691 2.0737 40 1 2.6652 -0.6647 6.1497 41 1 4.1231 -0.2257 8.1899 42 1 4.5431 1.3852 10.0004 43 1 4.7377 6.1782 12.7309 44 1 2.4656 4.4052 7.7967 45 1 2.0485 2.7961 5.9837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318361856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:21 Heat of formation + Delta-G solvation = -79.034238 kcal Electronic energy + Delta-G solvation = -27232.264755 eV Core-core repulsion = 23215.121229 eV Total energy + Delta-G solvation = -4017.143526 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.98710 -39.70288 -38.76883 -38.02177 -36.61733 -34.48910 -33.63787 -32.23288 -31.73888 -30.29992 -28.74820 -27.99499 -25.80532 -25.37906 -24.10681 -22.33733 -21.61416 -21.00366 -20.48354 -20.00377 -18.58820 -18.01542 -17.47310 -17.00706 -16.25115 -16.16396 -15.89000 -15.34498 -14.73672 -14.60249 -14.42934 -14.24456 -14.00516 -13.88117 -13.60616 -13.55886 -13.40836 -12.87585 -12.65258 -12.57335 -12.19765 -11.99658 -11.83575 -11.68413 -11.65557 -11.51949 -11.43002 -11.17306 -11.09002 -11.07710 -10.95671 -10.72639 -10.46425 -9.81899 -9.61009 -9.46431 -9.30609 -8.77156 -8.28256 -7.01644 -6.49302 -4.06863 1.24698 2.12624 2.17257 2.37004 3.09978 3.11700 3.16577 3.22506 3.60460 3.93531 3.99657 4.15637 4.36778 4.42770 4.52447 4.79236 4.94948 4.99673 5.04841 5.06128 5.08905 5.16610 5.24147 5.38870 5.45171 5.48460 5.50548 5.61919 5.68786 5.69977 5.75508 5.78478 5.92389 6.03170 6.11354 6.13581 6.16786 6.69357 6.72214 6.79389 6.98824 7.04836 7.16485 7.32514 7.47534 7.65931 7.73097 7.94894 8.08267 8.95868 9.65078 10.68337 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034967 B = 0.001884 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.569541 B =14859.225835 C =15164.842392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.137 4.137 7 C 0.141 3.859 8 H 0.097 0.903 9 N -0.696 5.696 10 C 0.512 3.488 11 O -0.522 6.522 12 C 0.495 3.505 13 O -0.509 6.509 14 N -0.625 5.625 15 C 0.025 3.975 16 C -0.081 4.081 17 C -0.219 4.219 18 C 0.150 3.850 19 O -0.173 6.173 20 C -0.392 4.392 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.178 4.178 29 C -0.063 4.063 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.413 0.587 40 H 0.414 0.586 41 H 0.113 0.887 42 H 0.133 0.867 43 H 0.271 0.729 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 -13.418 -23.099 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 H 0.102 0.898 4 C -0.156 4.156 5 C -0.163 4.163 6 C -0.176 4.176 7 C 0.037 3.963 8 H 0.115 0.885 9 N -0.349 5.349 10 C 0.293 3.707 11 O -0.398 6.398 12 C 0.276 3.724 13 O -0.384 6.384 14 N -0.270 5.270 15 C -0.067 4.067 16 C -0.101 4.101 17 C -0.239 4.239 18 C 0.096 3.904 19 O -0.075 6.075 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.166 4.166 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 C -0.198 4.198 29 C -0.083 4.083 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.249 0.751 40 H 0.250 0.750 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.081 0.919 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.798 -12.970 -22.934 26.781 hybrid contribution 0.569 -0.421 0.811 1.077 sum -4.229 -13.391 -22.123 26.204 Atomic orbital electron populations 1.21819 0.94102 1.02218 1.02199 1.22270 0.96359 0.99753 0.93854 0.89818 1.22550 0.96176 0.99908 0.96980 1.22362 0.97115 1.01434 0.95364 1.22598 0.97957 1.00764 0.96246 1.21888 0.97050 0.91255 0.86108 0.88515 1.45942 1.67919 1.15894 1.05183 1.20192 0.78468 0.87877 0.84193 1.90752 1.46907 1.18824 1.83268 1.20044 0.80100 0.88258 0.83989 1.90789 1.46052 1.18826 1.82783 1.42884 1.67576 1.12533 1.04050 1.17213 1.08262 0.90976 0.90233 1.20511 0.97311 0.99101 0.93210 1.20989 1.07893 0.93828 1.01196 1.19446 0.92849 0.89264 0.88887 1.83996 1.68268 1.33574 1.21712 1.21337 1.39727 0.94070 0.91691 0.88974 1.25319 0.97040 0.95031 0.99163 1.70043 1.43586 1.02064 1.33665 0.85696 0.79240 0.78770 0.79651 1.19848 1.20225 1.19139 1.20094 1.05749 1.00336 0.93604 1.20553 0.98230 0.91661 0.97830 0.92342 0.92167 0.92292 0.90962 0.91033 0.91353 0.91377 0.91038 0.90829 0.75064 0.75011 0.86849 0.84898 0.91920 0.85930 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.12 37.16 0.34 -0.51 16 2 C -0.10 -0.62 3.16 -88.96 -0.28 -0.90 16 3 H 0.08 0.49 7.74 -51.93 -0.40 0.08 16 4 C -0.12 -0.59 6.33 -24.74 -0.16 -0.75 16 5 C -0.13 -0.70 6.83 -25.07 -0.17 -0.88 16 6 C -0.14 -1.02 6.59 -25.62 -0.17 -1.19 16 7 C 0.14 1.12 2.82 -66.81 -0.19 0.94 16 8 H 0.10 0.88 7.26 -51.93 -0.38 0.51 16 9 N -0.70 -6.70 4.98 -53.19 -0.26 -6.96 16 10 C 0.51 6.37 7.88 -11.64 -0.09 6.28 16 11 O -0.52 -7.30 16.14 5.49 0.09 -7.21 16 12 C 0.49 7.22 7.61 -11.65 -0.09 7.13 16 13 O -0.51 -8.53 14.26 5.47 0.08 -8.45 16 14 N -0.62 -9.22 5.32 -10.27 -0.05 -9.28 16 15 C 0.03 0.45 6.25 -83.69 -0.52 -0.07 16 16 C -0.08 -1.46 9.96 -39.40 -0.39 -1.85 16 17 C -0.22 -4.64 9.12 -39.42 -0.36 -5.00 16 18 C 0.15 3.58 6.65 -39.07 -0.26 3.33 16 19 O -0.17 -4.86 9.75 0.10 0.00 -4.86 16 20 C -0.39 -10.75 9.44 30.89 0.29 -10.46 16 21 H 0.09 2.31 5.29 -52.49 -0.28 2.04 16 22 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 24 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 28 C -0.18 -3.82 9.98 -39.42 -0.39 -4.21 16 29 C -0.06 -1.21 8.64 -39.40 -0.34 -1.55 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.07 0.34 8.04 -51.93 -0.42 -0.08 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.61 7.92 -51.93 -0.41 0.20 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.41 3.62 7.83 -40.82 -0.32 3.30 16 40 H 0.41 5.19 8.30 -40.82 -0.34 4.86 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.13 2.77 5.70 -52.49 -0.30 2.47 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 45 H 0.12 2.23 6.52 -52.48 -0.34 1.89 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -31.75 376.85 -7.74 -39.49 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.12 Total: 9.30 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.88 Total: -8.72 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.44 Total: -40.38 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.17 Total: -20.52 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.75 -7.74 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318361856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.545 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds