Wall clock time and date at job start Tue Mar 31 2020 17:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.53784 * 2 1 4 4 C 1.54883 * 110.48588 * 237.38620 * 2 1 3 5 5 C 1.54892 * 102.74967 * 203.38036 * 4 2 1 6 6 C 1.54266 * 104.19199 * 37.94417 * 5 4 2 7 7 C 1.53870 * 106.60097 * 336.38792 * 6 5 4 8 8 H 1.09003 * 110.07337 * 119.31062 * 7 6 5 9 9 N 1.46502 * 110.03591 * 240.72140 * 7 6 5 10 10 C 1.34786 * 119.99441 * 272.16787 * 9 7 6 11 11 O 1.21358 * 120.00402 * 359.97438 * 10 9 7 12 12 C 1.49322 * 119.99399 * 179.97438 * 10 9 7 13 13 O 1.21382 * 120.00158 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99356 * 179.97438 * 12 10 9 15 15 C 1.39741 * 119.99631 * 185.44791 * 14 12 10 16 16 C 1.39004 * 120.00644 * 214.72811 * 15 14 12 17 17 C 1.37969 * 119.98933 * 179.97438 * 16 15 14 18 18 C 1.38935 * 120.00957 * 0.02562 * 17 16 15 19 19 O 1.35759 * 119.99440 * 179.97438 * 18 17 16 20 20 C 1.34803 * 116.99572 * 354.39989 * 19 18 17 21 21 H 1.07997 * 120.00736 * 354.64687 * 20 19 18 22 22 C 1.38659 * 119.99999 * 174.64003 * 20 19 18 23 23 N 1.31564 * 119.99440 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00304 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46886 * 90.00423 * 24 22 20 26 26 H 1.48495 * 109.47467 * 210.00336 * 24 22 20 27 27 H 1.48501 * 109.47106 * 330.00334 * 24 22 20 28 28 C 1.38933 * 120.01494 * 0.02562 * 18 17 16 29 29 C 1.37965 * 120.00679 * 359.97438 * 28 18 17 30 30 H 1.09006 * 109.46905 * 297.39016 * 1 2 3 31 31 H 1.09003 * 109.47309 * 57.38688 * 1 2 3 32 32 H 1.08993 * 109.47636 * 177.38794 * 1 2 3 33 33 H 1.09001 * 110.75668 * 321.69952 * 4 2 1 34 34 H 1.09003 * 110.76013 * 85.06525 * 4 2 1 35 35 H 1.09004 * 110.48431 * 156.62074 * 5 4 2 36 36 H 1.09000 * 110.48339 * 279.12997 * 5 4 2 37 37 H 1.09005 * 110.03042 * 217.10355 * 6 5 4 38 38 H 1.08995 * 110.03569 * 95.67683 * 6 5 4 39 39 H 0.96993 * 120.00382 * 92.16097 * 9 7 6 40 40 H 0.96996 * 120.00722 * 5.45297 * 14 12 10 41 41 H 1.07995 * 120.00562 * 0.02562 * 16 15 14 42 42 H 1.07998 * 119.99183 * 180.28066 * 17 16 15 43 43 H 0.97000 * 119.99306 * 179.97438 * 23 22 20 44 44 H 1.07997 * 119.99969 * 179.97438 * 28 18 17 45 45 H 1.08005 * 120.00699 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0721 -0.7820 -1.2221 5 6 3.4907 -1.1980 -0.7599 6 6 3.3164 -1.5406 0.7341 7 6 2.0699 -0.7788 1.2173 8 1 1.3172 -1.4816 1.5747 9 7 2.4344 0.1528 2.2876 10 6 2.4431 -0.2637 3.5694 11 8 2.1485 -1.4101 3.8371 12 6 2.8152 0.6857 4.6602 13 8 3.1103 1.8323 4.3925 14 7 2.8234 0.2694 5.9421 15 6 3.0599 1.1837 6.9721 16 6 3.7609 0.7882 8.1054 17 6 3.9946 1.6913 9.1219 18 6 3.5292 2.9958 9.0130 19 8 3.7589 3.8841 10.0136 20 6 4.3411 3.4083 11.1325 21 1 4.5237 2.3491 11.2378 22 6 4.7057 4.2789 12.1483 23 7 4.4830 5.5692 12.0201 24 14 5.5118 3.6197 13.6990 25 1 6.9861 3.6033 13.5219 26 1 5.1611 4.4920 14.8485 27 1 5.0291 2.2397 13.9595 28 6 2.8277 3.3912 7.8809 29 6 2.5935 2.4886 6.8640 30 1 -0.3633 0.4728 0.9125 31 1 -0.3634 0.5539 -0.8656 32 1 -0.3634 -1.0265 -0.0468 33 1 1.4579 -1.6600 -1.4222 34 1 2.1251 -0.1382 -2.1001 35 1 3.8315 -2.0723 -1.3146 36 1 4.1902 -0.3715 -0.8849 37 1 4.1927 -1.2172 1.2960 38 1 3.1691 -2.6135 0.8564 39 1 2.6696 1.0691 2.0737 40 1 2.6652 -0.6647 6.1497 41 1 4.1231 -0.2257 8.1899 42 1 4.5431 1.3852 10.0004 43 1 4.7377 6.1782 12.7309 44 1 2.4656 4.4052 7.7967 45 1 2.0485 2.7961 5.9837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318361856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:20 Heat of formation + Delta-G solvation = -100.007082 kcal Electronic energy + Delta-G solvation = -27233.174206 eV Core-core repulsion = 23215.121229 eV Total energy + Delta-G solvation = -4018.052977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -42.13223 -40.94845 -40.15503 -38.95785 -38.21999 -35.75853 -34.69184 -34.15457 -32.22692 -31.93716 -30.03895 -28.95608 -27.43474 -26.35673 -25.14611 -23.95029 -22.87071 -21.92252 -21.22422 -21.01845 -19.92942 -19.53450 -18.99093 -18.25123 -17.53585 -17.27194 -16.92037 -16.39957 -16.20129 -15.94314 -15.63679 -15.53275 -15.30919 -14.93152 -14.76833 -14.57706 -14.51811 -14.19856 -14.05355 -13.62357 -13.38654 -13.31162 -13.15222 -12.86076 -12.76193 -12.71270 -12.42905 -12.30611 -12.10449 -11.96051 -11.63284 -11.58113 -11.45493 -11.45204 -11.12670 -10.76515 -10.60291 -10.27767 -9.89822 -8.70154 -8.46549 -6.13522 0.03422 0.49093 0.70085 1.23421 1.37750 1.46625 1.55116 2.05327 2.18718 2.56041 2.79326 3.14088 3.31068 3.47190 3.49251 3.63956 3.88006 4.01097 4.07391 4.26498 4.43061 4.45237 4.47323 4.52894 4.56117 4.57356 4.64254 4.67897 4.91153 4.94656 4.97152 5.02962 5.10445 5.10594 5.21239 5.22255 5.27300 5.30823 5.34998 5.41386 5.46447 5.50403 5.62500 5.88357 6.01237 6.08624 6.29997 6.69205 6.87444 6.97888 7.76817 8.76384 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034967 B = 0.001884 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.569541 B =14859.225835 C =15164.842392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.088 0.912 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.137 4.137 7 C 0.138 3.862 8 H 0.087 0.913 9 N -0.681 5.681 10 C 0.519 3.481 11 O -0.537 6.537 12 C 0.499 3.501 13 O -0.529 6.529 14 N -0.621 5.621 15 C 0.051 3.949 16 C -0.073 4.073 17 C -0.220 4.220 18 C 0.113 3.887 19 O -0.226 6.226 20 C -0.413 4.413 21 H 0.107 0.893 22 C -0.024 4.024 23 N -0.919 5.919 24 Si 1.020 2.980 25 H -0.264 1.264 26 H -0.273 1.273 27 H -0.250 1.250 28 C -0.186 4.186 29 C -0.065 4.065 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.418 0.582 40 H 0.428 0.572 41 H 0.156 0.844 42 H 0.134 0.866 43 H 0.273 0.727 44 H 0.119 0.881 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 -16.231 -25.151 30.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.175 4.175 7 C 0.034 3.966 8 H 0.105 0.895 9 N -0.334 5.334 10 C 0.299 3.701 11 O -0.414 6.414 12 C 0.281 3.719 13 O -0.405 6.405 14 N -0.268 5.268 15 C -0.042 4.042 16 C -0.093 4.093 17 C -0.240 4.240 18 C 0.062 3.938 19 O -0.133 6.133 20 C -0.489 4.489 21 H 0.124 0.876 22 C -0.221 4.221 23 N -0.557 5.557 24 Si 0.839 3.161 25 H -0.189 1.189 26 H -0.198 1.198 27 H -0.174 1.174 28 C -0.206 4.206 29 C -0.085 4.085 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.256 0.744 40 H 0.267 0.733 41 H 0.174 0.826 42 H 0.152 0.848 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.697 -15.837 -25.072 30.025 hybrid contribution 0.416 0.279 1.053 1.166 sum -4.280 -15.558 -24.019 28.936 Atomic orbital electron populations 1.21816 0.93884 1.02460 1.02102 1.22275 0.96470 0.99842 0.93246 0.89371 1.22546 0.95590 1.00179 0.96766 1.22352 0.97662 1.01920 0.93982 1.22580 0.96950 1.00540 0.97471 1.22082 0.97238 0.91153 0.86123 0.89508 1.45988 1.66355 1.16460 1.04573 1.19728 0.78840 0.87111 0.84439 1.90759 1.48107 1.19109 1.83448 1.20466 0.78892 0.88238 0.84271 1.90791 1.46626 1.19931 1.83175 1.42830 1.67649 1.12773 1.03546 1.17337 1.05496 0.90774 0.90582 1.20842 0.96171 1.00411 0.91880 1.21129 1.07491 0.93205 1.02127 1.19914 0.94420 0.90294 0.89161 1.83963 1.70814 1.35439 1.23042 1.21863 1.39774 0.95007 0.92209 0.87593 1.26623 0.97541 0.95197 1.02777 1.70195 1.46429 1.03795 1.35289 0.84566 0.78212 0.78687 0.74645 1.18903 1.19835 1.17363 1.20240 1.05679 1.00913 0.93725 1.20695 0.98272 0.92095 0.97456 0.93525 0.91061 0.92044 0.90409 0.89784 0.90452 0.91216 0.92267 0.90950 0.74424 0.73272 0.82614 0.84821 0.91835 0.86307 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.12 71.98 0.66 -0.72 16 2 C -0.10 -0.96 3.16 -9.72 -0.03 -0.99 16 3 H 0.09 0.80 7.74 -2.38 -0.02 0.78 16 4 C -0.11 -0.81 6.33 31.88 0.20 -0.61 16 5 C -0.12 -1.07 6.83 31.67 0.22 -0.85 16 6 C -0.14 -1.78 6.59 31.32 0.21 -1.57 16 7 C 0.14 1.93 2.82 45.71 0.13 2.06 16 8 H 0.09 1.44 7.26 -2.39 -0.02 1.42 16 9 N -0.68 -11.81 4.98 -440.55 -2.19 -14.01 16 10 C 0.52 11.84 7.88 87.23 0.69 12.52 16 11 O -0.54 -13.88 16.14 -3.27 -0.05 -13.93 16 12 C 0.50 13.43 7.61 87.23 0.66 14.09 16 13 O -0.53 -16.72 14.26 -3.34 -0.05 -16.77 16 14 N -0.62 -16.55 5.32 -304.74 -1.62 -18.17 16 15 C 0.05 1.71 6.25 38.25 0.24 1.95 16 16 C -0.07 -2.44 9.96 22.39 0.22 -2.22 16 17 C -0.22 -9.20 9.12 22.37 0.20 -9.00 16 18 C 0.11 5.58 6.65 22.60 0.15 5.73 16 19 O -0.23 -13.45 9.75 -22.56 -0.22 -13.67 16 20 C -0.41 -23.48 9.44 67.92 0.64 -22.84 16 21 H 0.11 5.43 5.29 -2.91 -0.02 5.41 16 22 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 23 N -0.92 -56.00 13.67 21.62 0.30 -55.70 16 24 Si 1.02 42.06 29.55 68.60 2.03 44.09 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 28 C -0.19 -8.17 9.98 22.37 0.22 -7.94 16 29 C -0.07 -2.45 8.64 22.39 0.19 -2.25 16 30 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.55 8.12 -2.39 -0.02 0.53 16 33 H 0.08 0.50 8.04 -2.39 -0.02 0.48 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.92 7.92 -2.38 -0.02 0.90 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.42 6.52 7.83 -92.71 -0.73 5.79 16 40 H 0.43 9.29 8.30 -92.71 -0.77 8.52 16 41 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.13 5.52 5.70 -2.91 -0.02 5.51 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 45 H 0.13 4.72 6.52 -2.91 -0.02 4.70 16 Total: -1.00 -72.08 376.85 2.81 -69.27 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -0.45 Total: 32.40 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.07 Total: -13.51 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -3.52 Total: -87.88 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -0.32 Total: -44.37 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -72.08 2.81 -69.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318361856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.738 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds