Wall clock time and date at job start Tue Mar 31 2020 17:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.01729 * 2 1 4 4 C 1.54273 * 110.07493 * 121.42246 * 2 1 3 5 5 C 1.54889 * 104.19397 * 142.91693 * 4 2 1 6 6 C 1.54884 * 102.75247 * 322.05561 * 5 4 2 7 7 C 1.53876 * 110.03310 * 238.61371 * 2 1 3 8 8 H 1.09000 * 110.03237 * 359.97438 * 7 2 1 9 9 N 1.46500 * 110.03445 * 121.38233 * 7 2 1 10 10 C 1.34784 * 119.99534 * 205.00188 * 9 7 2 11 11 O 1.21360 * 120.00049 * 359.97438 * 10 9 7 12 12 C 1.49316 * 119.99434 * 180.02562 * 10 9 7 13 13 O 1.21397 * 120.00345 * 359.71688 * 12 10 9 14 14 N 1.34774 * 119.99865 * 179.97438 * 12 10 9 15 15 C 1.39743 * 119.99981 * 175.21740 * 14 12 10 16 16 C 1.38998 * 120.00734 * 214.86619 * 15 14 12 17 17 C 1.37972 * 119.99185 * 179.72040 * 16 15 14 18 18 C 1.38939 * 120.00655 * 0.57868 * 17 16 15 19 19 O 1.35758 * 119.99441 * 179.69602 * 18 17 16 20 20 C 1.34797 * 116.99940 * 185.32547 * 19 18 17 21 21 H 1.07994 * 120.00279 * 354.96440 * 20 19 18 22 22 C 1.38653 * 119.99455 * 174.96662 * 20 19 18 23 23 N 1.31554 * 120.00527 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99539 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47005 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46785 * 119.99923 * 24 22 20 27 27 H 1.48499 * 109.47063 * 239.99744 * 24 22 20 28 28 C 1.38940 * 120.01334 * 359.67660 * 18 17 16 29 29 C 1.37962 * 120.00697 * 0.04813 * 28 18 17 30 30 H 1.09006 * 109.46696 * 181.38852 * 1 2 3 31 31 H 1.09000 * 109.46901 * 301.38776 * 1 2 3 32 32 H 1.08995 * 109.47151 * 61.39005 * 1 2 3 33 33 H 1.08995 * 110.47959 * 261.59415 * 4 2 1 34 34 H 1.08997 * 110.48442 * 24.23664 * 4 2 1 35 35 H 1.09006 * 110.75371 * 80.37475 * 5 4 2 36 36 H 1.08996 * 110.75108 * 203.55316 * 5 4 2 37 37 H 1.08998 * 110.48890 * 279.27077 * 6 5 4 38 38 H 1.08997 * 110.48881 * 156.62148 * 6 5 4 39 39 H 0.96997 * 119.99964 * 24.99473 * 9 7 2 40 40 H 0.96996 * 120.00466 * 355.22123 * 14 12 10 41 41 H 1.07994 * 120.00156 * 359.97438 * 16 15 14 42 42 H 1.07995 * 119.99401 * 180.25216 * 17 16 15 43 43 H 0.96997 * 120.00490 * 180.02562 * 23 22 20 44 44 H 1.08000 * 119.99486 * 180.02562 * 28 18 17 45 45 H 1.07999 * 120.00507 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0595 -0.7554 1.2365 5 6 3.3150 -1.4997 0.7180 6 6 2.8885 -1.9396 -0.7045 7 6 2.0571 -0.7529 -1.2341 8 1 1.2229 -1.1187 -1.8328 9 7 2.9024 0.1325 -2.0390 10 6 3.0586 -0.1003 -3.3574 11 8 2.4995 -1.0435 -3.8775 12 6 3.9206 0.8018 -4.1776 13 8 4.4766 1.7477 -3.6581 14 7 4.0773 0.5689 -5.4958 15 6 4.8016 1.4681 -6.2829 16 6 4.4216 1.7022 -7.5993 17 6 5.1335 2.5944 -8.3744 18 6 6.2373 3.2498 -7.8430 19 8 6.9413 4.1230 -8.6079 20 6 8.0636 4.6408 -8.0699 21 1 8.3226 4.4204 -7.0450 22 6 8.8853 5.4566 -8.8327 23 7 8.5701 5.7247 -10.0814 24 14 10.4402 6.1748 -8.0870 25 1 10.5671 5.7243 -6.6777 26 1 11.6198 5.7130 -8.8619 27 1 10.3701 7.6576 -8.1288 28 6 6.6206 3.0120 -6.5289 29 6 5.9058 2.1243 -5.7515 30 1 -0.3633 -1.0274 0.0249 31 1 -0.3633 0.5352 0.8773 32 1 -0.3633 0.4921 -0.9021 33 1 2.3306 -0.0535 2.0250 34 1 1.3160 -1.4665 1.5964 35 1 4.1719 -0.8273 0.6738 36 1 3.5367 -2.3648 1.3428 37 1 2.2788 -2.8419 -0.6581 38 1 3.7646 -2.1019 -1.3324 39 1 3.3495 0.8861 -1.6231 40 1 3.6874 -0.2228 -5.8982 41 1 3.5668 1.1888 -8.0140 42 1 4.8358 2.7793 -9.3959 43 1 9.1451 6.2951 -10.6151 44 1 7.4785 3.5220 -6.1160 45 1 6.2035 1.9398 -4.7299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318361858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:28 Heat of formation + Delta-G solvation = -77.499489 kcal Electronic energy + Delta-G solvation = -27331.932864 eV Core-core repulsion = 23314.855890 eV Total energy + Delta-G solvation = -4017.076975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -40.99999 -39.73028 -38.76802 -38.02406 -36.61562 -34.45458 -33.59656 -32.22622 -31.67507 -30.27751 -28.77451 -28.06272 -25.87086 -25.32853 -24.10080 -22.37151 -21.63855 -20.95982 -20.45384 -19.90725 -18.67238 -17.94632 -17.37365 -17.01043 -16.45140 -16.08157 -15.91819 -15.34340 -14.86557 -14.55338 -14.43394 -14.23473 -13.94400 -13.73583 -13.64464 -13.58649 -13.33323 -12.96030 -12.75136 -12.61447 -12.02995 -11.92660 -11.79379 -11.76062 -11.60961 -11.45685 -11.34682 -11.21296 -11.09947 -11.07470 -11.03393 -10.75652 -10.44498 -9.79729 -9.63259 -9.45551 -9.22331 -8.75826 -8.26860 -7.01903 -6.48704 -4.05932 1.25813 2.12040 2.17488 2.38737 3.10371 3.13221 3.18898 3.22239 3.61531 3.94603 4.00801 4.15103 4.37456 4.42571 4.54069 4.79732 4.92989 4.98641 5.04825 5.05775 5.12343 5.21495 5.21662 5.38135 5.45297 5.48612 5.57475 5.62436 5.67505 5.70686 5.74674 5.79665 5.92619 6.03476 6.09873 6.13239 6.23832 6.62458 6.72233 6.88413 6.95304 7.04092 7.24161 7.38034 7.44660 7.67780 7.73142 7.96297 8.08808 8.96954 9.65475 10.68994 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.002060 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.121501 B =13589.280280 C =14326.302610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.082 0.918 4 C -0.120 4.120 5 C -0.127 4.127 6 C -0.134 4.134 7 C 0.140 3.860 8 H 0.096 0.904 9 N -0.695 5.695 10 C 0.512 3.488 11 O -0.522 6.522 12 C 0.495 3.505 13 O -0.510 6.510 14 N -0.624 5.624 15 C 0.022 3.978 16 C -0.085 4.085 17 C -0.178 4.178 18 C 0.150 3.850 19 O -0.173 6.173 20 C -0.391 4.391 21 H 0.094 0.906 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.275 1.275 28 C -0.222 4.222 29 C -0.060 4.060 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.412 0.588 40 H 0.414 0.586 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.270 0.730 44 H 0.132 0.868 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.893 -13.559 19.872 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.100 0.900 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.173 4.173 7 C 0.036 3.964 8 H 0.114 0.886 9 N -0.349 5.349 10 C 0.293 3.707 11 O -0.398 6.398 12 C 0.276 3.724 13 O -0.385 6.385 14 N -0.269 5.269 15 C -0.070 4.070 16 C -0.105 4.105 17 C -0.198 4.198 18 C 0.095 3.905 19 O -0.076 6.076 20 C -0.467 4.467 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.242 4.242 29 C -0.080 4.080 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.249 0.751 40 H 0.250 0.750 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.080 0.920 44 H 0.150 0.850 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.865 -13.331 19.452 26.863 hybrid contribution 0.788 0.352 0.368 0.938 sum -12.077 -12.979 19.821 26.593 Atomic orbital electron populations 1.21861 0.93954 1.02201 1.02196 1.22072 0.96590 0.99936 0.93744 0.89996 1.22465 0.97459 0.99065 0.96752 1.22534 0.97780 1.00186 0.95963 1.22785 1.00277 0.97615 0.96592 1.21858 0.93142 0.89828 0.91564 0.88568 1.45944 1.49343 1.31859 1.07717 1.20185 0.82112 0.85149 0.83254 1.90752 1.47353 1.29919 1.71772 1.20048 0.83020 0.85725 0.83607 1.90776 1.46843 1.29686 1.71235 1.42842 1.51541 1.25281 1.07234 1.17246 0.96818 1.01130 0.91845 1.20390 0.99070 0.98515 0.92494 1.20004 0.97951 1.01208 1.00591 1.19446 0.91791 0.89080 0.90150 1.83966 1.34400 1.49264 1.40002 1.21406 0.98133 1.28978 0.98173 0.88858 1.25311 0.99066 0.96772 0.95394 1.70043 1.37565 1.34735 1.07137 0.85632 0.79926 0.78791 0.79018 1.19012 1.20109 1.20102 1.21092 1.04153 1.04373 0.94558 1.20839 0.92154 0.95543 0.99453 0.92232 0.92147 0.92357 0.91255 0.91089 0.91293 0.91259 0.90468 0.90997 0.75086 0.74996 0.86426 0.85834 0.91989 0.85035 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.85 37.16 0.33 -0.47 16 2 C -0.10 -0.64 3.26 -89.50 -0.29 -0.93 16 3 H 0.08 0.51 7.62 -51.93 -0.40 0.11 16 4 C -0.12 -0.62 6.36 -25.07 -0.16 -0.78 16 5 C -0.13 -0.76 6.91 -24.74 -0.17 -0.93 16 6 C -0.13 -0.99 6.54 -25.07 -0.16 -1.15 16 7 C 0.14 1.12 2.90 -66.81 -0.19 0.93 16 8 H 0.10 0.88 7.10 -51.93 -0.37 0.51 16 9 N -0.70 -6.76 5.02 -53.19 -0.27 -7.03 16 10 C 0.51 6.40 7.88 -11.64 -0.09 6.30 16 11 O -0.52 -7.29 16.14 5.49 0.09 -7.20 16 12 C 0.49 7.25 7.73 -11.65 -0.09 7.16 16 13 O -0.51 -8.60 13.91 5.46 0.08 -8.52 16 14 N -0.62 -9.18 5.32 -10.27 -0.05 -9.24 16 15 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 16 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 17 C -0.18 -3.65 9.98 -39.42 -0.39 -4.04 16 18 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 19 O -0.17 -4.88 9.75 0.12 0.00 -4.88 16 20 C -0.39 -10.83 9.48 30.89 0.29 -10.53 16 21 H 0.09 2.41 5.19 -52.49 -0.27 2.13 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -24.96 13.67 55.48 0.76 -24.21 16 24 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 27 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 28 C -0.22 -4.91 9.16 -39.42 -0.36 -5.27 16 29 C -0.06 -1.19 8.69 -39.40 -0.34 -1.53 16 30 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.33 7.84 -51.93 -0.41 -0.08 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 39 H 0.41 3.69 7.79 -40.82 -0.32 3.38 16 40 H 0.41 5.14 8.30 -40.82 -0.34 4.80 16 41 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.13 2.92 5.63 -52.49 -0.30 2.62 16 45 H 0.13 2.39 6.22 -52.49 -0.33 2.06 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -31.83 375.95 -7.75 -39.57 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.08 Total: 9.40 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -2.91 Total: -8.96 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.44 Total: -40.47 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.17 Total: -20.60 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.83 -7.75 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318361858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.925 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.38 seconds