Wall clock time and date at job start Tue Mar 31 2020 17:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.01729 * 2 1 4 4 C 1.54273 * 110.07493 * 121.42246 * 2 1 3 5 5 C 1.54889 * 104.19397 * 142.91693 * 4 2 1 6 6 C 1.54884 * 102.75247 * 322.05561 * 5 4 2 7 7 C 1.53876 * 110.03310 * 238.61371 * 2 1 3 8 8 H 1.09000 * 110.03237 * 359.97438 * 7 2 1 9 9 N 1.46500 * 110.03445 * 121.38233 * 7 2 1 10 10 C 1.34784 * 119.99534 * 205.00188 * 9 7 2 11 11 O 1.21360 * 120.00049 * 359.97438 * 10 9 7 12 12 C 1.49316 * 119.99434 * 180.02562 * 10 9 7 13 13 O 1.21397 * 120.00345 * 359.71688 * 12 10 9 14 14 N 1.34774 * 119.99865 * 179.97438 * 12 10 9 15 15 C 1.39743 * 119.99981 * 175.21740 * 14 12 10 16 16 C 1.38998 * 120.00734 * 214.86619 * 15 14 12 17 17 C 1.37972 * 119.99185 * 179.72040 * 16 15 14 18 18 C 1.38939 * 120.00655 * 0.57868 * 17 16 15 19 19 O 1.35758 * 119.99441 * 179.69602 * 18 17 16 20 20 C 1.34797 * 116.99940 * 185.32547 * 19 18 17 21 21 H 1.07994 * 120.00279 * 354.96440 * 20 19 18 22 22 C 1.38653 * 119.99455 * 174.96662 * 20 19 18 23 23 N 1.31554 * 120.00527 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99539 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47005 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46785 * 119.99923 * 24 22 20 27 27 H 1.48499 * 109.47063 * 239.99744 * 24 22 20 28 28 C 1.38940 * 120.01334 * 359.67660 * 18 17 16 29 29 C 1.37962 * 120.00697 * 0.04813 * 28 18 17 30 30 H 1.09006 * 109.46696 * 181.38852 * 1 2 3 31 31 H 1.09000 * 109.46901 * 301.38776 * 1 2 3 32 32 H 1.08995 * 109.47151 * 61.39005 * 1 2 3 33 33 H 1.08995 * 110.47959 * 261.59415 * 4 2 1 34 34 H 1.08997 * 110.48442 * 24.23664 * 4 2 1 35 35 H 1.09006 * 110.75371 * 80.37475 * 5 4 2 36 36 H 1.08996 * 110.75108 * 203.55316 * 5 4 2 37 37 H 1.08998 * 110.48890 * 279.27077 * 6 5 4 38 38 H 1.08997 * 110.48881 * 156.62148 * 6 5 4 39 39 H 0.96997 * 119.99964 * 24.99473 * 9 7 2 40 40 H 0.96996 * 120.00466 * 355.22123 * 14 12 10 41 41 H 1.07994 * 120.00156 * 359.97438 * 16 15 14 42 42 H 1.07995 * 119.99401 * 180.25216 * 17 16 15 43 43 H 0.96997 * 120.00490 * 180.02562 * 23 22 20 44 44 H 1.08000 * 119.99486 * 180.02562 * 28 18 17 45 45 H 1.07999 * 120.00507 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0595 -0.7554 1.2365 5 6 3.3150 -1.4997 0.7180 6 6 2.8885 -1.9396 -0.7045 7 6 2.0571 -0.7529 -1.2341 8 1 1.2229 -1.1187 -1.8328 9 7 2.9024 0.1325 -2.0390 10 6 3.0586 -0.1003 -3.3574 11 8 2.4995 -1.0435 -3.8775 12 6 3.9206 0.8018 -4.1776 13 8 4.4766 1.7477 -3.6581 14 7 4.0773 0.5689 -5.4958 15 6 4.8016 1.4681 -6.2829 16 6 4.4216 1.7022 -7.5993 17 6 5.1335 2.5944 -8.3744 18 6 6.2373 3.2498 -7.8430 19 8 6.9413 4.1230 -8.6079 20 6 8.0636 4.6408 -8.0699 21 1 8.3226 4.4204 -7.0450 22 6 8.8853 5.4566 -8.8327 23 7 8.5701 5.7247 -10.0814 24 14 10.4402 6.1748 -8.0870 25 1 10.5671 5.7243 -6.6777 26 1 11.6198 5.7130 -8.8619 27 1 10.3701 7.6576 -8.1288 28 6 6.6206 3.0120 -6.5289 29 6 5.9058 2.1243 -5.7515 30 1 -0.3633 -1.0274 0.0249 31 1 -0.3633 0.5352 0.8773 32 1 -0.3633 0.4921 -0.9021 33 1 2.3306 -0.0535 2.0250 34 1 1.3160 -1.4665 1.5964 35 1 4.1719 -0.8273 0.6738 36 1 3.5367 -2.3648 1.3428 37 1 2.2788 -2.8419 -0.6581 38 1 3.7646 -2.1019 -1.3324 39 1 3.3495 0.8861 -1.6231 40 1 3.6874 -0.2228 -5.8982 41 1 3.5668 1.1888 -8.0140 42 1 4.8358 2.7793 -9.3959 43 1 9.1451 6.2951 -10.6151 44 1 7.4785 3.5220 -6.1160 45 1 6.2035 1.9398 -4.7299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318361858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:26 Heat of formation + Delta-G solvation = -98.585708 kcal Electronic energy + Delta-G solvation = -27332.847232 eV Core-core repulsion = 23314.855890 eV Total energy + Delta-G solvation = -4017.991342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -42.14216 -40.96209 -40.16882 -38.97729 -38.22016 -35.74340 -34.63934 -34.16664 -32.15784 -31.92071 -30.05751 -29.02297 -27.42256 -26.43654 -25.13440 -23.95053 -22.90502 -21.90280 -21.14653 -20.98199 -20.06338 -19.50378 -18.80455 -18.37441 -17.52176 -17.25388 -16.99457 -16.32674 -16.17877 -15.95970 -15.72759 -15.51412 -15.32021 -15.01264 -14.85223 -14.68609 -14.50512 -14.19549 -13.82440 -13.59437 -13.40439 -13.28304 -13.23063 -12.81531 -12.73900 -12.54076 -12.46103 -12.33401 -12.10618 -11.93681 -11.73161 -11.59162 -11.48212 -11.46902 -11.13475 -10.73035 -10.58631 -10.27568 -9.88493 -8.70865 -8.48019 -6.14672 0.04848 0.50304 0.68432 1.23961 1.36021 1.43584 1.53931 2.05277 2.17393 2.56287 2.78684 3.12230 3.32273 3.48194 3.48607 3.62621 3.89724 4.05449 4.07775 4.27166 4.42432 4.44455 4.45191 4.56900 4.57472 4.60533 4.63902 4.69489 4.88089 4.94837 4.96001 5.04438 5.06543 5.10594 5.20965 5.26423 5.28922 5.29869 5.33610 5.41546 5.48766 5.51064 5.65881 5.87582 6.00952 6.09187 6.30089 6.69387 6.87641 6.96830 7.74836 8.74710 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.002060 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.121501 B =13589.280280 C =14326.302610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.134 4.134 7 C 0.136 3.864 8 H 0.087 0.913 9 N -0.681 5.681 10 C 0.519 3.481 11 O -0.536 6.536 12 C 0.498 3.502 13 O -0.530 6.530 14 N -0.619 5.619 15 C 0.048 3.952 16 C -0.071 4.071 17 C -0.179 4.179 18 C 0.113 3.887 19 O -0.224 6.224 20 C -0.413 4.413 21 H 0.101 0.899 22 C -0.021 4.021 23 N -0.916 5.916 24 Si 1.017 2.983 25 H -0.254 1.254 26 H -0.267 1.267 27 H -0.268 1.268 28 C -0.227 4.227 29 C -0.068 4.068 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.417 0.583 40 H 0.429 0.571 41 H 0.164 0.836 42 H 0.131 0.869 43 H 0.273 0.727 44 H 0.122 0.878 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.259 -15.238 22.535 30.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.101 0.899 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.172 4.172 7 C 0.033 3.967 8 H 0.105 0.895 9 N -0.334 5.334 10 C 0.299 3.701 11 O -0.414 6.414 12 C 0.280 3.720 13 O -0.407 6.407 14 N -0.266 5.266 15 C -0.045 4.045 16 C -0.091 4.091 17 C -0.199 4.199 18 C 0.062 3.938 19 O -0.130 6.130 20 C -0.489 4.489 21 H 0.118 0.882 22 C -0.219 4.219 23 N -0.554 5.554 24 Si 0.837 3.163 25 H -0.177 1.177 26 H -0.192 1.192 27 H -0.193 1.193 28 C -0.247 4.247 29 C -0.088 4.088 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.255 0.745 40 H 0.268 0.732 41 H 0.182 0.818 42 H 0.149 0.851 43 H 0.083 0.917 44 H 0.140 0.860 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.284 -15.065 22.180 30.380 hybrid contribution 0.926 0.608 -0.253 1.136 sum -13.358 -14.457 21.927 29.466 Atomic orbital electron populations 1.21857 0.93393 1.02627 1.02221 1.22068 0.96987 0.99795 0.93135 0.89941 1.22453 0.97161 0.99215 0.96366 1.22525 0.97979 1.00572 0.95143 1.22776 0.99604 0.97660 0.97180 1.22062 0.92655 0.90100 0.91880 0.89452 1.45998 1.48656 1.31875 1.06830 1.19710 0.81871 0.84630 0.83866 1.90758 1.48058 1.30388 1.72156 1.20486 0.82498 0.85522 0.83455 1.90777 1.47590 1.30656 1.71642 1.42786 1.51254 1.25330 1.07237 1.17375 0.95390 0.99564 0.92151 1.20779 0.99383 0.97049 0.91846 1.20307 0.97051 1.01132 1.01425 1.19970 0.92965 0.89989 0.90914 1.83936 1.35598 1.51860 1.41621 1.21836 0.98729 1.29570 0.98770 0.88217 1.26554 1.02542 0.96967 0.95818 1.70172 1.39575 1.36725 1.08964 0.84547 0.75170 0.78002 0.78611 1.17706 1.19231 1.19291 1.21103 1.04317 1.04987 0.94324 1.20937 0.92728 0.95520 0.99615 0.91697 0.91137 0.93275 0.90387 0.90141 0.91775 0.90282 0.89629 0.92642 0.74511 0.73185 0.81824 0.85131 0.91750 0.86021 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.85 71.98 0.64 -0.63 16 2 C -0.10 -0.99 3.26 -10.07 -0.03 -1.03 16 3 H 0.08 0.83 7.62 -2.38 -0.02 0.81 16 4 C -0.11 -0.87 6.36 31.67 0.20 -0.67 16 5 C -0.12 -1.19 6.91 31.88 0.22 -0.97 16 6 C -0.13 -1.72 6.54 31.67 0.21 -1.51 16 7 C 0.14 1.91 2.90 45.72 0.13 2.05 16 8 H 0.09 1.43 7.10 -2.39 -0.02 1.41 16 9 N -0.68 -11.95 5.02 -440.54 -2.21 -14.16 16 10 C 0.52 11.88 7.88 87.23 0.69 12.57 16 11 O -0.54 -13.79 16.14 -3.28 -0.05 -13.84 16 12 C 0.50 13.49 7.73 87.23 0.67 14.16 16 13 O -0.53 -16.94 13.91 -3.39 -0.05 -16.98 16 14 N -0.62 -16.45 5.32 -304.74 -1.62 -18.07 16 15 C 0.05 1.61 6.30 38.25 0.24 1.85 16 16 C -0.07 -2.29 9.96 22.39 0.22 -2.06 16 17 C -0.18 -7.31 9.98 22.37 0.22 -7.08 16 18 C 0.11 5.56 6.65 22.61 0.15 5.71 16 19 O -0.22 -13.32 9.75 -22.50 -0.22 -13.54 16 20 C -0.41 -24.01 9.48 67.92 0.64 -23.36 16 21 H 0.10 5.39 5.19 -2.91 -0.02 5.37 16 22 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 23 N -0.92 -55.76 13.67 21.61 0.30 -55.46 16 24 Si 1.02 42.95 29.55 68.60 2.03 44.98 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 27 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 28 C -0.23 -10.28 9.16 22.37 0.20 -10.08 16 29 C -0.07 -2.63 8.69 22.39 0.19 -2.44 16 30 H 0.06 0.51 8.12 -2.38 -0.02 0.49 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.49 7.84 -2.39 -0.02 0.47 16 35 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.90 8.04 -2.39 -0.02 0.89 16 39 H 0.42 6.68 7.79 -92.71 -0.72 5.96 16 40 H 0.43 9.16 8.30 -92.71 -0.77 8.39 16 41 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 42 H 0.13 5.07 8.06 -2.91 -0.02 5.04 16 43 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.12 5.63 5.63 -2.91 -0.02 5.61 16 45 H 0.13 4.93 6.22 -2.91 -0.02 4.91 16 Total: -1.00 -72.35 375.95 2.80 -69.55 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.45 Total: 31.71 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 5.07 Total: -14.19 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -3.54 Total: -87.69 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.32 Total: -44.36 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -72.35 2.80 -69.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318361858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.033 kcal (2) G-P(sol) polarization free energy of solvation -72.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds