Wall clock time and date at job start Tue Mar 31 2020 17:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.01630 * 2 1 4 4 C 1.54265 * 110.03510 * 238.60671 * 2 1 3 5 5 C 1.54886 * 104.19939 * 217.10872 * 4 2 1 6 6 C 1.54885 * 102.74810 * 37.94033 * 5 4 2 7 7 C 1.53880 * 110.03316 * 121.44024 * 2 1 3 8 8 H 1.08994 * 110.03670 * 238.57208 * 7 2 1 9 9 N 1.46508 * 110.03046 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99810 * 203.61931 * 9 7 2 11 11 O 1.21372 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.49311 * 119.99913 * 180.02562 * 10 9 7 13 13 O 1.21395 * 120.00092 * 359.97438 * 12 10 9 14 14 N 1.34784 * 120.00116 * 179.97438 * 12 10 9 15 15 C 1.39742 * 120.00051 * 174.79029 * 14 12 10 16 16 C 1.38999 * 120.00929 * 326.08029 * 15 14 12 17 17 C 1.37960 * 119.99394 * 179.74465 * 16 15 14 18 18 C 1.38939 * 120.00655 * 0.55138 * 17 16 15 19 19 O 1.35759 * 119.99669 * 179.72186 * 18 17 16 20 20 C 1.34800 * 117.00532 * 185.89871 * 19 18 17 21 21 H 1.07998 * 119.99460 * 5.40711 * 20 19 18 22 22 C 1.38647 * 120.00276 * 185.40677 * 20 19 18 23 23 N 1.31559 * 120.00069 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99905 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47365 * 60.00250 * 24 22 20 26 26 H 1.48502 * 109.47308 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47244 * 299.99837 * 24 22 20 28 28 C 1.38937 * 120.01239 * 359.70438 * 18 17 16 29 29 C 1.37962 * 120.00872 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47114 * 299.93813 * 1 2 3 32 32 H 1.08998 * 109.47311 * 59.93725 * 1 2 3 33 33 H 1.08997 * 110.48653 * 98.42259 * 4 2 1 34 34 H 1.09004 * 110.48027 * 335.78660 * 4 2 1 35 35 H 1.09006 * 110.75162 * 279.63051 * 5 4 2 36 36 H 1.08998 * 110.91260 * 156.33096 * 5 4 2 37 37 H 1.08998 * 110.49100 * 80.73817 * 6 5 4 38 38 H 1.09005 * 110.48788 * 203.38337 * 6 5 4 39 39 H 0.96994 * 120.00037 * 23.61482 * 9 7 2 40 40 H 0.97001 * 119.99688 * 354.79374 * 14 12 10 41 41 H 1.07998 * 119.99804 * 0.02562 * 16 15 14 42 42 H 1.07997 * 119.99879 * 180.29818 * 17 16 15 43 43 H 0.97003 * 120.00213 * 180.02562 * 23 22 20 44 44 H 1.07998 * 119.99565 * 179.97438 * 28 18 17 45 45 H 1.08001 * 120.00736 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3137 -1.5005 -0.7197 6 6 2.8874 -1.9410 0.7027 7 6 2.0571 -0.7541 1.2334 8 1 2.6867 -0.0962 1.8325 9 7 0.9359 -1.2465 2.0377 10 6 1.1083 -1.5008 3.3499 11 8 2.1925 -1.3223 3.8653 12 6 -0.0343 -2.0031 4.1694 13 8 -1.1186 -2.1821 3.6538 14 7 0.1382 -2.2579 5.4817 15 6 -0.9547 -2.6233 6.2721 16 6 -2.2116 -2.0910 6.0093 17 6 -3.2914 -2.4559 6.7865 18 6 -3.1205 -3.3466 7.8391 19 8 -4.1821 -3.7012 8.6073 20 6 -3.9283 -4.4708 9.6845 21 1 -2.9087 -4.7047 9.9527 22 6 -4.9762 -4.9622 10.4479 23 7 -6.2182 -4.6768 10.1214 24 14 -4.6244 -6.0293 11.9402 25 1 -3.8000 -5.2660 12.9114 26 1 -5.9052 -6.4227 12.5805 27 1 -3.8882 -7.2470 11.5155 28 6 -1.8633 -3.8747 8.1054 29 6 -0.7841 -3.5145 7.3250 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5129 0.8906 32 1 -0.3634 0.5148 -0.8894 33 1 2.3297 -0.0528 -2.0255 34 1 1.3142 -1.4653 -1.5972 35 1 4.1710 -0.8287 -0.6754 36 1 3.5356 -2.3672 -1.3423 37 1 2.2771 -2.8429 0.6560 38 1 3.7637 -2.1043 1.3301 39 1 0.0695 -1.3894 1.6257 40 1 1.0211 -2.1877 5.8774 41 1 -2.3436 -1.3953 5.1938 42 1 -4.2689 -2.0461 6.5793 43 1 -6.9514 -5.0203 10.6558 44 1 -1.7307 -4.5667 8.9239 45 1 0.1930 -3.9253 7.5318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318361859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:45 Heat of formation + Delta-G solvation = -70.128466 kcal Electronic energy + Delta-G solvation = -27401.399867 eV Core-core repulsion = 23384.642524 eV Total energy + Delta-G solvation = -4016.757343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -41.03835 -39.77770 -38.78487 -38.02402 -36.61156 -34.46064 -33.64250 -32.23206 -31.68985 -30.29682 -28.74025 -27.96182 -25.71689 -25.46764 -24.34788 -22.34812 -21.54430 -21.14286 -20.29240 -19.79288 -18.78824 -18.02854 -17.34160 -16.88524 -16.38007 -15.93450 -15.91303 -15.64355 -14.73866 -14.64535 -14.57989 -14.17406 -14.13757 -13.90493 -13.60236 -13.39934 -13.17235 -12.86843 -12.75735 -12.58834 -12.36026 -11.95633 -11.69804 -11.66174 -11.51344 -11.46518 -11.39983 -11.22568 -11.07612 -11.07216 -10.99678 -10.72968 -10.47960 -9.82380 -9.60470 -9.45187 -9.30106 -8.76609 -8.27949 -7.00947 -6.48818 -4.06537 1.25135 2.12991 2.18542 2.37910 3.11147 3.11753 3.15435 3.23262 3.61391 3.93853 4.02094 4.14941 4.37266 4.43265 4.52865 4.81552 4.91443 5.00457 5.02009 5.05244 5.06512 5.19270 5.24553 5.35656 5.40167 5.50656 5.50966 5.64001 5.69167 5.70084 5.76182 5.83161 5.91638 6.03161 6.09707 6.13358 6.16491 6.70092 6.72430 6.79776 6.99702 7.05084 7.16473 7.32816 7.48122 7.66319 7.74066 7.95159 8.08436 8.96161 9.65368 10.68714 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.001938 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.924768 B =14443.690815 C =14912.662246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.136 4.136 7 C 0.141 3.859 8 H 0.095 0.905 9 N -0.698 5.698 10 C 0.510 3.490 11 O -0.523 6.523 12 C 0.495 3.505 13 O -0.510 6.510 14 N -0.624 5.624 15 C 0.026 3.974 16 C -0.064 4.064 17 C -0.178 4.178 18 C 0.150 3.850 19 O -0.173 6.173 20 C -0.393 4.393 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.219 4.219 29 C -0.082 4.082 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.415 0.585 40 H 0.414 0.586 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.271 0.729 44 H 0.133 0.867 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.069 7.567 -19.223 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.122 4.122 3 H 0.102 0.898 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.175 4.175 7 C 0.037 3.963 8 H 0.113 0.887 9 N -0.355 5.355 10 C 0.291 3.709 11 O -0.399 6.399 12 C 0.276 3.724 13 O -0.385 6.385 14 N -0.270 5.270 15 C -0.067 4.067 16 C -0.084 4.084 17 C -0.198 4.198 18 C 0.095 3.905 19 O -0.075 6.075 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.239 4.239 29 C -0.102 4.102 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.256 0.744 40 H 0.250 0.750 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.151 0.849 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 16.570 7.592 -19.150 26.437 hybrid contribution 0.297 -0.661 0.780 1.065 sum 16.866 6.931 -18.370 25.884 Atomic orbital electron populations 1.21886 0.94529 1.02142 1.02741 1.22028 0.96491 0.99835 0.93868 0.89763 1.22470 0.97517 0.99089 0.96761 1.22460 0.97737 1.00202 0.95792 1.22815 1.00137 0.98067 0.96476 1.21781 0.87293 0.95660 0.91592 0.88701 1.46215 1.15615 1.65376 1.08266 1.20210 0.88549 0.78784 0.83364 1.90751 1.26347 1.50943 1.71811 1.20050 0.88757 0.80426 0.83168 1.90785 1.26258 1.50319 1.71182 1.42887 1.11670 1.65102 1.07313 1.17221 0.87440 1.04536 0.97470 1.20572 0.90836 0.98473 0.98472 1.20096 0.99114 1.02732 0.97828 1.19451 0.87771 0.92738 0.90523 1.83993 1.28840 1.60161 1.34545 1.21283 0.94521 1.29338 1.01720 0.89039 1.25309 0.94404 0.97569 0.99239 1.70029 0.98416 1.42235 1.38702 0.85769 0.78080 0.79623 0.79902 1.19454 1.20257 1.19465 1.20987 0.92326 1.06339 1.04232 1.20502 0.98531 0.95855 0.95302 0.92075 0.91794 0.91706 0.91246 0.91116 0.91181 0.91154 0.90905 0.90786 0.74445 0.75002 0.85814 0.85935 0.91865 0.84905 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 7.72 37.16 0.29 -0.66 16 2 C -0.10 -0.62 3.50 -89.50 -0.31 -0.93 16 3 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.62 6.36 -25.07 -0.16 -0.78 16 5 C -0.12 -0.68 6.91 -24.74 -0.17 -0.86 16 6 C -0.14 -1.02 6.52 -25.07 -0.16 -1.19 16 7 C 0.14 1.14 3.21 -66.80 -0.21 0.92 16 8 H 0.09 0.85 7.61 -51.93 -0.40 0.46 16 9 N -0.70 -6.87 4.52 -53.19 -0.24 -7.11 16 10 C 0.51 6.42 7.87 -11.65 -0.09 6.33 16 11 O -0.52 -7.35 16.16 5.48 0.09 -7.26 16 12 C 0.49 7.26 7.62 -11.65 -0.09 7.17 16 13 O -0.51 -8.56 14.19 5.46 0.08 -8.48 16 14 N -0.62 -9.25 5.32 -10.27 -0.05 -9.30 16 15 C 0.03 0.46 6.27 -83.69 -0.52 -0.07 16 16 C -0.06 -1.22 8.64 -39.40 -0.34 -1.56 16 17 C -0.18 -3.82 9.98 -39.42 -0.39 -4.21 16 18 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 19 O -0.17 -4.85 9.75 0.11 0.00 -4.85 16 20 C -0.39 -10.76 9.44 30.88 0.29 -10.47 16 21 H 0.09 2.29 5.29 -52.49 -0.28 2.02 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 24 Si 0.94 20.18 29.55 -169.99 -5.02 15.15 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 26 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 C -0.22 -4.63 9.12 -39.42 -0.36 -4.99 16 29 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 30 H 0.06 0.38 6.85 -51.93 -0.36 0.02 16 31 H 0.06 0.44 7.78 -51.93 -0.40 0.04 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.37 7.85 -51.93 -0.41 -0.04 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.59 8.05 -51.93 -0.42 0.18 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.41 3.83 5.21 -40.82 -0.21 3.62 16 40 H 0.41 5.21 8.30 -40.82 -0.34 4.87 16 41 H 0.12 2.25 6.45 -52.49 -0.34 1.92 16 42 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 43 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16 45 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -31.66 372.14 -7.74 -39.40 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.96 Total: 9.86 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.99 Total: -8.86 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.46 Total: -40.56 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.17 Total: -20.60 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.66 -7.74 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318361859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.729 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.96 seconds