Wall clock time and date at job start Tue Mar 31 2020 17:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.01630 * 2 1 4 4 C 1.54265 * 110.03510 * 238.60671 * 2 1 3 5 5 C 1.54886 * 104.19939 * 217.10872 * 4 2 1 6 6 C 1.54885 * 102.74810 * 37.94033 * 5 4 2 7 7 C 1.53880 * 110.03316 * 121.44024 * 2 1 3 8 8 H 1.08994 * 110.03670 * 238.57208 * 7 2 1 9 9 N 1.46508 * 110.03046 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99810 * 203.61931 * 9 7 2 11 11 O 1.21372 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.49311 * 119.99913 * 180.02562 * 10 9 7 13 13 O 1.21395 * 120.00092 * 359.97438 * 12 10 9 14 14 N 1.34784 * 120.00116 * 179.97438 * 12 10 9 15 15 C 1.39742 * 120.00051 * 174.79029 * 14 12 10 16 16 C 1.38999 * 120.00929 * 326.08029 * 15 14 12 17 17 C 1.37960 * 119.99394 * 179.74465 * 16 15 14 18 18 C 1.38939 * 120.00655 * 0.55138 * 17 16 15 19 19 O 1.35759 * 119.99669 * 179.72186 * 18 17 16 20 20 C 1.34800 * 117.00532 * 185.89871 * 19 18 17 21 21 H 1.07998 * 119.99460 * 5.40711 * 20 19 18 22 22 C 1.38647 * 120.00276 * 185.40677 * 20 19 18 23 23 N 1.31559 * 120.00069 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99905 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47365 * 60.00250 * 24 22 20 26 26 H 1.48502 * 109.47308 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47244 * 299.99837 * 24 22 20 28 28 C 1.38937 * 120.01239 * 359.70438 * 18 17 16 29 29 C 1.37962 * 120.00872 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47114 * 299.93813 * 1 2 3 32 32 H 1.08998 * 109.47311 * 59.93725 * 1 2 3 33 33 H 1.08997 * 110.48653 * 98.42259 * 4 2 1 34 34 H 1.09004 * 110.48027 * 335.78660 * 4 2 1 35 35 H 1.09006 * 110.75162 * 279.63051 * 5 4 2 36 36 H 1.08998 * 110.91260 * 156.33096 * 5 4 2 37 37 H 1.08998 * 110.49100 * 80.73817 * 6 5 4 38 38 H 1.09005 * 110.48788 * 203.38337 * 6 5 4 39 39 H 0.96994 * 120.00037 * 23.61482 * 9 7 2 40 40 H 0.97001 * 119.99688 * 354.79374 * 14 12 10 41 41 H 1.07998 * 119.99804 * 0.02562 * 16 15 14 42 42 H 1.07997 * 119.99879 * 180.29818 * 17 16 15 43 43 H 0.97003 * 120.00213 * 180.02562 * 23 22 20 44 44 H 1.07998 * 119.99565 * 179.97438 * 28 18 17 45 45 H 1.08001 * 120.00736 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3137 -1.5005 -0.7197 6 6 2.8874 -1.9410 0.7027 7 6 2.0571 -0.7541 1.2334 8 1 2.6867 -0.0962 1.8325 9 7 0.9359 -1.2465 2.0377 10 6 1.1083 -1.5008 3.3499 11 8 2.1925 -1.3223 3.8653 12 6 -0.0343 -2.0031 4.1694 13 8 -1.1186 -2.1821 3.6538 14 7 0.1382 -2.2579 5.4817 15 6 -0.9547 -2.6233 6.2721 16 6 -2.2116 -2.0910 6.0093 17 6 -3.2914 -2.4559 6.7865 18 6 -3.1205 -3.3466 7.8391 19 8 -4.1821 -3.7012 8.6073 20 6 -3.9283 -4.4708 9.6845 21 1 -2.9087 -4.7047 9.9527 22 6 -4.9762 -4.9622 10.4479 23 7 -6.2182 -4.6768 10.1214 24 14 -4.6244 -6.0293 11.9402 25 1 -3.8000 -5.2660 12.9114 26 1 -5.9052 -6.4227 12.5805 27 1 -3.8882 -7.2470 11.5155 28 6 -1.8633 -3.8747 8.1054 29 6 -0.7841 -3.5145 7.3250 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5129 0.8906 32 1 -0.3634 0.5148 -0.8894 33 1 2.3297 -0.0528 -2.0255 34 1 1.3142 -1.4653 -1.5972 35 1 4.1710 -0.8287 -0.6754 36 1 3.5356 -2.3672 -1.3423 37 1 2.2771 -2.8429 0.6560 38 1 3.7637 -2.1043 1.3301 39 1 0.0695 -1.3894 1.6257 40 1 1.0211 -2.1877 5.8774 41 1 -2.3436 -1.3953 5.1938 42 1 -4.2689 -2.0461 6.5793 43 1 -6.9514 -5.0203 10.6558 44 1 -1.7307 -4.5667 8.9239 45 1 0.1930 -3.9253 7.5318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318361859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:37 Heat of formation + Delta-G solvation = -90.657128 kcal Electronic energy + Delta-G solvation = -27402.290057 eV Core-core repulsion = 23384.642524 eV Total energy + Delta-G solvation = -4017.647533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 6.66 seconds Orbital eigenvalues (eV) -42.16407 -40.99570 -40.20421 -39.00010 -38.21806 -35.74032 -34.66879 -34.15473 -32.21372 -31.93501 -30.04086 -28.93515 -27.41996 -26.22733 -25.50377 -23.96636 -22.91908 -21.78682 -21.47366 -20.55301 -19.98601 -19.69005 -18.97611 -18.08485 -17.69969 -17.06300 -16.78909 -16.39497 -16.36376 -16.12283 -15.65956 -15.50305 -15.39272 -15.18593 -14.71859 -14.57289 -14.53388 -14.19342 -13.71650 -13.61611 -13.38718 -13.33086 -13.26207 -12.99749 -12.79980 -12.68057 -12.39344 -12.13963 -11.98749 -11.92509 -11.74390 -11.53112 -11.49679 -11.46497 -11.12377 -10.76474 -10.59969 -10.27826 -9.89652 -8.69570 -8.46117 -6.13251 0.02961 0.49240 0.70678 1.23916 1.37772 1.48178 1.53839 2.05200 2.19059 2.56355 2.79645 3.14339 3.31054 3.47540 3.51138 3.63536 3.87852 4.01083 4.07713 4.29855 4.38659 4.45163 4.45619 4.49521 4.52707 4.54685 4.64274 4.71583 4.82485 4.92206 5.01856 5.02783 5.11047 5.14701 5.19650 5.22191 5.25826 5.30182 5.34385 5.39062 5.46045 5.49117 5.62583 5.88507 6.01287 6.08650 6.29629 6.68667 6.87147 6.98106 7.77023 8.76545 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.001938 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.924768 B =14443.690815 C =14912.662246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.137 4.137 7 C 0.136 3.864 8 H 0.087 0.913 9 N -0.684 5.684 10 C 0.516 3.484 11 O -0.537 6.537 12 C 0.498 3.502 13 O -0.529 6.529 14 N -0.620 5.620 15 C 0.051 3.949 16 C -0.066 4.066 17 C -0.186 4.186 18 C 0.113 3.887 19 O -0.226 6.226 20 C -0.413 4.413 21 H 0.107 0.893 22 C -0.023 4.023 23 N -0.919 5.919 24 Si 1.019 2.981 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.256 1.256 28 C -0.220 4.220 29 C -0.074 4.074 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.419 0.581 40 H 0.428 0.572 41 H 0.136 0.864 42 H 0.119 0.881 43 H 0.273 0.727 44 H 0.134 0.866 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.238 7.722 -20.697 29.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.117 4.117 3 H 0.113 0.887 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.175 4.175 7 C 0.032 3.968 8 H 0.105 0.895 9 N -0.340 5.340 10 C 0.296 3.704 11 O -0.414 6.414 12 C 0.281 3.719 13 O -0.406 6.406 14 N -0.267 5.267 15 C -0.042 4.042 16 C -0.086 4.086 17 C -0.205 4.205 18 C 0.062 3.938 19 O -0.132 6.132 20 C -0.489 4.489 21 H 0.124 0.876 22 C -0.221 4.221 23 N -0.557 5.557 24 Si 0.838 3.162 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.180 1.180 28 C -0.239 4.239 29 C -0.093 4.093 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.260 0.740 40 H 0.267 0.733 41 H 0.153 0.847 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.152 0.848 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 19.810 7.778 -20.693 29.684 hybrid contribution -0.447 -0.536 0.904 1.142 sum 19.363 7.242 -19.789 28.618 Atomic orbital electron populations 1.21891 0.94611 1.02002 1.02888 1.22032 0.96345 1.00189 0.93137 0.88744 1.22467 0.97199 0.99223 0.96576 1.22454 0.98186 1.00683 0.94381 1.22793 0.99522 0.97475 0.97726 1.21997 0.86708 0.96049 0.92018 0.89461 1.46281 1.16427 1.63888 1.07362 1.19762 0.87486 0.79141 0.83974 1.90758 1.26443 1.52054 1.72185 1.20476 0.89064 0.79308 0.83081 1.90788 1.27342 1.50812 1.71631 1.42829 1.11469 1.65076 1.07326 1.17345 0.87738 1.02410 0.96699 1.20713 0.90909 0.98649 0.98331 1.20241 0.99956 1.02569 0.97775 1.19919 0.88337 0.94151 0.91417 1.83960 1.30902 1.62351 1.36033 1.21819 0.95503 1.29369 1.02234 0.87618 1.26617 0.93962 0.98933 1.02601 1.70185 0.99680 1.44905 1.40933 0.84633 0.78186 0.77783 0.75549 1.18047 1.19917 1.18049 1.21128 0.92120 1.06070 1.04612 1.20832 0.99414 0.94967 0.94131 0.92328 0.92794 0.90466 0.89800 0.91094 0.90418 0.90455 0.91629 0.91652 0.73980 0.73259 0.84658 0.86314 0.91828 0.84811 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 7.72 71.98 0.56 -1.03 16 2 C -0.10 -0.94 3.50 -10.07 -0.04 -0.97 16 3 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -0.87 6.36 31.67 0.20 -0.67 16 5 C -0.12 -1.02 6.91 31.88 0.22 -0.80 16 6 C -0.14 -1.80 6.52 31.67 0.21 -1.59 16 7 C 0.14 1.93 3.21 45.72 0.15 2.07 16 8 H 0.09 1.42 7.61 -2.39 -0.02 1.40 16 9 N -0.68 -12.22 4.52 -440.54 -1.99 -14.21 16 10 C 0.52 11.96 7.87 87.23 0.69 12.65 16 11 O -0.54 -13.96 16.16 -3.32 -0.05 -14.01 16 12 C 0.50 13.54 7.62 87.23 0.66 14.20 16 13 O -0.53 -16.83 14.19 -3.39 -0.05 -16.88 16 14 N -0.62 -16.61 5.32 -304.73 -1.62 -18.23 16 15 C 0.05 1.71 6.27 38.24 0.24 1.95 16 16 C -0.07 -2.48 8.64 22.39 0.19 -2.29 16 17 C -0.19 -8.17 9.98 22.37 0.22 -7.95 16 18 C 0.11 5.57 6.65 22.61 0.15 5.72 16 19 O -0.23 -13.45 9.75 -22.53 -0.22 -13.67 16 20 C -0.41 -23.53 9.44 67.92 0.64 -22.89 16 21 H 0.11 5.41 5.29 -2.91 -0.02 5.39 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 23 N -0.92 -56.00 13.67 21.61 0.30 -55.71 16 24 Si 1.02 42.03 29.55 68.60 2.03 44.06 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 28 C -0.22 -9.19 9.12 22.37 0.20 -8.99 16 29 C -0.07 -2.46 9.96 22.39 0.22 -2.24 16 30 H 0.06 0.62 6.85 -2.39 -0.02 0.61 16 31 H 0.05 0.66 7.78 -2.38 -0.02 0.64 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.55 7.85 -2.39 -0.02 0.53 16 35 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.96 8.05 -2.39 -0.02 0.94 16 38 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.42 7.02 5.21 -92.71 -0.48 6.53 16 40 H 0.43 9.34 8.30 -92.71 -0.77 8.57 16 41 H 0.14 4.77 6.45 -2.91 -0.02 4.75 16 42 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 43 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.13 5.52 5.71 -2.91 -0.02 5.51 16 45 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -71.90 372.14 3.17 -68.73 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.21 Total: 33.58 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 4.99 Total: -13.65 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -3.32 Total: -88.16 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.32 Total: -44.56 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -71.90 3.17 -68.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318361859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.927 kcal (2) G-P(sol) polarization free energy of solvation -71.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.67 seconds