Wall clock time and date at job start Tue Mar 31 2020 17:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47598 * 2 1 4 4 N 1.46503 * 109.47097 * 240.00473 * 2 1 3 5 5 C 1.34775 * 120.00291 * 85.00031 * 4 2 1 6 6 O 1.21362 * 119.99821 * 0.02562 * 5 4 2 7 7 C 1.49313 * 119.99975 * 180.27780 * 5 4 2 8 8 O 1.21393 * 120.00371 * 359.72507 * 7 5 4 9 9 N 1.34786 * 119.99997 * 179.72390 * 7 5 4 10 10 C 1.39738 * 119.99794 * 185.13896 * 9 7 5 11 11 C 1.38999 * 120.00386 * 213.23050 * 10 9 7 12 12 C 1.37964 * 119.99132 * 179.74295 * 11 10 9 13 13 C 1.38931 * 120.00959 * 0.50988 * 12 11 10 14 14 O 1.35765 * 119.99664 * 179.74729 * 13 12 11 15 15 C 1.34801 * 117.00144 * 185.78785 * 14 13 12 16 16 H 1.07997 * 119.99928 * 5.40742 * 15 14 13 17 17 C 1.38646 * 119.99852 * 185.40801 * 15 14 13 18 18 N 1.31562 * 119.99844 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00098 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47069 * 90.00081 * 19 17 15 21 21 H 1.48507 * 109.47020 * 210.00254 * 19 17 15 22 22 H 1.48495 * 109.47205 * 329.99909 * 19 17 15 23 23 C 1.38941 * 120.01268 * 359.76429 * 13 12 11 24 24 C 1.37967 * 120.00641 * 359.97438 * 23 13 12 25 25 C 1.53000 * 109.47237 * 120.00597 * 2 1 3 26 26 C 1.53781 * 113.61100 * 274.49567 * 25 2 1 27 27 C 1.53963 * 87.01977 * 220.04822 * 26 25 2 28 28 C 1.53780 * 87.10933 * 25.36482 * 27 26 25 29 29 H 1.08998 * 109.47284 * 64.90103 * 1 2 3 30 30 H 1.08995 * 109.47332 * 184.90333 * 1 2 3 31 31 H 1.09009 * 109.46563 * 304.90824 * 1 2 3 32 32 H 0.97004 * 119.99695 * 265.00275 * 4 2 1 33 33 H 0.97002 * 119.99643 * 5.13643 * 9 7 5 34 34 H 1.08000 * 119.99958 * 359.97438 * 11 10 9 35 35 H 1.08003 * 119.99333 * 180.25030 * 12 11 10 36 36 H 0.96997 * 120.00084 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.99713 * 179.97438 * 23 13 12 38 38 H 1.07998 * 120.00337 * 179.97438 * 24 23 13 39 39 H 1.08999 * 112.85197 * 45.68995 * 25 2 1 40 40 H 1.09003 * 113.61976 * 334.56450 * 26 25 2 41 41 H 1.09001 * 113.61418 * 105.47238 * 26 25 2 42 42 H 1.08997 * 113.53506 * 270.81077 * 27 26 25 43 43 H 1.09000 * 113.74234 * 139.94749 * 27 26 25 44 44 H 1.08998 * 113.61503 * 220.09231 * 28 27 26 45 45 H 1.08994 * 113.61450 * 89.19071 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8589 1.1595 -2.4115 7 6 2.6389 -0.7235 -3.5779 8 8 2.9275 -1.9013 -3.5235 9 7 2.7623 -0.0524 -4.7402 10 6 3.1191 -0.7347 -5.9064 11 6 3.8918 -0.1019 -6.8731 12 6 4.2484 -0.7775 -8.0219 13 6 3.8263 -2.0866 -8.2175 14 8 4.1730 -2.7495 -9.3505 15 6 3.6335 -3.9711 -9.5342 16 1 2.8925 -4.3438 -8.8425 17 6 4.0301 -4.7492 -10.6110 18 7 3.5040 -5.9417 -10.7900 19 14 5.3114 -4.1044 -11.8077 20 1 6.6655 -4.4986 -11.3428 21 1 5.0638 -4.6784 -13.1548 22 1 5.2233 -2.6237 -11.8768 23 6 3.0490 -2.7175 -7.2540 24 6 2.6967 -2.0443 -6.1024 25 6 2.0400 -0.7214 1.2492 26 6 2.1412 0.1863 2.4864 27 6 3.4601 -0.5387 2.8109 28 6 3.5719 -0.8434 1.3077 29 1 -0.3634 0.4359 -0.9306 30 1 -0.3634 -1.0238 0.0878 31 1 -0.3633 0.5882 0.8429 32 1 2.2490 -1.6317 -1.1527 33 1 2.6035 0.9042 -4.7672 34 1 4.2162 0.9173 -6.7231 35 1 4.8522 -0.2872 -8.7713 36 1 3.7811 -6.4859 -11.5436 37 1 2.7207 -3.7351 -7.4065 38 1 2.0922 -2.5346 -5.3537 39 1 1.5196 -1.6603 1.4379 40 1 2.2709 1.2412 2.2447 41 1 1.3545 0.0128 3.2207 42 1 3.3279 -1.4274 3.4280 43 1 4.2440 0.1215 3.1821 44 1 3.9385 -1.8470 1.0917 45 1 4.0934 -0.0706 0.7432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320215489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:07 Heat of formation + Delta-G solvation = -49.111066 kcal Electronic energy + Delta-G solvation = -27285.907095 eV Core-core repulsion = 23270.061134 eV Total energy + Delta-G solvation = -4015.845960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.03106 -39.88943 -39.08413 -38.36309 -36.76130 -35.36870 -34.01624 -32.36650 -31.15213 -30.37352 -28.56051 -26.48789 -25.82953 -25.54971 -24.54129 -22.61814 -21.84598 -21.04658 -20.40537 -19.81664 -18.83271 -17.85245 -17.47618 -17.14035 -16.36634 -16.18821 -15.86209 -15.63314 -15.00998 -14.74249 -14.34533 -14.15250 -13.94732 -13.88930 -13.78343 -13.36851 -13.00912 -12.86587 -12.84687 -12.58332 -12.46875 -12.32727 -12.30813 -11.92333 -11.77860 -11.68929 -11.48681 -10.99321 -10.97745 -10.82137 -10.78365 -10.65896 -10.24919 -9.83064 -9.62921 -9.48701 -9.36005 -8.81265 -8.36360 -7.13848 -6.45057 -4.10558 1.21217 2.02820 2.09655 2.30684 3.16921 3.21483 3.24785 3.38317 3.53226 4.11331 4.15842 4.20887 4.23445 4.38103 4.43399 4.46295 4.74772 4.81120 4.81480 4.97902 5.05334 5.24230 5.30167 5.32434 5.37499 5.49502 5.49718 5.54692 5.55111 5.57637 5.75214 5.84499 5.95469 6.00663 6.02091 6.07447 6.12035 6.47778 6.64052 6.75920 6.92822 6.99788 7.21751 7.36899 7.52327 7.67095 7.74743 7.96397 8.04930 8.89604 9.50676 10.62273 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.002004 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.226240 B =13969.207727 C =14288.268230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.150 3.850 3 H 0.092 0.908 4 N -0.695 5.695 5 C 0.513 3.487 6 O -0.523 6.523 7 C 0.495 3.505 8 O -0.506 6.506 9 N -0.627 5.627 10 C 0.036 3.964 11 C -0.089 4.089 12 C -0.176 4.176 13 C 0.154 3.846 14 O -0.213 6.213 15 C -0.389 4.389 16 H 0.107 0.893 17 C 0.063 3.937 18 N -0.876 5.876 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.206 4.206 24 C -0.063 4.063 25 C -0.123 4.123 26 C -0.129 4.129 27 C -0.143 4.143 28 C -0.137 4.137 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.413 0.587 33 H 0.414 0.586 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.280 0.720 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 12.685 24.132 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.110 0.890 4 N -0.348 5.348 5 C 0.294 3.706 6 O -0.399 6.399 7 C 0.276 3.724 8 O -0.381 6.381 9 N -0.273 5.273 10 C -0.057 4.057 11 C -0.109 4.109 12 C -0.196 4.196 13 C 0.101 3.899 14 O -0.117 6.117 15 C -0.464 4.464 16 H 0.125 0.875 17 C -0.141 4.141 18 N -0.514 5.514 19 Si 0.732 3.268 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.225 4.225 24 C -0.083 4.083 25 C -0.142 4.142 26 C -0.167 4.167 27 C -0.180 4.180 28 C -0.174 4.174 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.249 0.751 33 H 0.251 0.749 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.972 12.539 23.820 27.083 hybrid contribution 0.416 -0.027 -0.479 0.635 sum -2.557 12.512 23.341 26.607 Atomic orbital electron populations 1.22180 0.94717 1.02475 1.02837 1.21134 0.94411 0.97203 0.82674 0.88997 1.45811 1.65233 1.15071 1.08667 1.20129 0.78884 0.86925 0.84686 1.90753 1.48916 1.15363 1.84889 1.20071 0.80384 0.87491 0.84405 1.90805 1.47344 1.15304 1.84650 1.42890 1.65818 1.12430 1.06116 1.17281 1.05966 0.94454 0.87960 1.20369 0.97461 0.99313 0.93724 1.19991 1.07153 0.93044 0.99408 1.19185 0.93203 0.91405 0.86099 1.83577 1.62948 1.30838 1.34381 1.20777 1.22372 0.89823 1.13468 0.87547 1.24491 0.97821 0.94328 0.97417 1.69649 1.42342 1.08893 1.30469 0.86166 0.80967 0.80329 0.79359 1.19863 1.20747 1.18292 1.21196 1.04767 1.01977 0.94590 1.20754 0.98018 0.92913 0.96629 1.22931 0.97074 0.99990 0.94162 1.22927 0.98063 0.99018 0.96681 1.22846 0.97819 1.00704 0.96654 1.22912 0.95271 1.02555 0.96684 0.91893 0.92164 0.91276 0.75059 0.74927 0.86243 0.85825 0.90971 0.84396 0.85915 0.88385 0.89786 0.91104 0.90090 0.91303 0.91078 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.48 37.16 0.35 -0.82 16 2 C 0.15 1.14 2.39 -67.93 -0.16 0.98 16 3 H 0.09 0.80 7.32 -51.93 -0.38 0.42 16 4 N -0.69 -6.54 4.75 -54.28 -0.26 -6.80 16 5 C 0.51 6.23 7.85 -11.65 -0.09 6.14 16 6 O -0.52 -7.10 16.14 5.49 0.09 -7.02 16 7 C 0.50 7.08 7.62 -11.65 -0.09 6.99 16 8 O -0.51 -8.44 14.16 5.46 0.08 -8.36 16 9 N -0.63 -8.88 5.32 -10.27 -0.05 -8.93 16 10 C 0.04 0.61 6.28 -83.69 -0.53 0.09 16 11 C -0.09 -1.45 9.96 -39.40 -0.39 -1.84 16 12 C -0.18 -3.35 9.98 -39.43 -0.39 -3.74 16 13 C 0.15 3.49 6.65 -39.06 -0.26 3.23 16 14 O -0.21 -5.51 8.58 0.09 0.00 -5.51 16 15 C -0.39 -10.83 9.90 30.88 0.31 -10.52 16 16 H 0.11 3.03 5.52 -52.49 -0.29 2.75 16 17 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 18 N -0.88 -25.09 13.96 55.48 0.77 -24.31 16 19 Si 0.91 21.40 28.62 -169.99 -4.86 16.53 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 23 C -0.21 -4.48 9.13 -39.42 -0.36 -4.84 16 24 C -0.06 -1.22 8.64 -39.40 -0.34 -1.56 16 25 C -0.12 -0.71 3.21 -89.80 -0.29 -1.00 16 26 C -0.13 -0.65 7.65 -25.82 -0.20 -0.85 16 27 C -0.14 -0.75 8.09 -25.82 -0.21 -0.96 16 28 C -0.14 -0.86 7.33 -25.92 -0.19 -1.05 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.41 3.64 8.07 -40.82 -0.33 3.31 16 33 H 0.41 4.89 8.29 -40.82 -0.34 4.55 16 34 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 36 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.14 3.16 5.71 -52.48 -0.30 2.86 16 38 H 0.12 2.31 6.42 -52.49 -0.34 1.97 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.43 7.92 -51.93 -0.41 0.01 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -30.90 379.40 -7.62 -38.53 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.17 Total: 8.28 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.94 Total: -8.13 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.46 Total: -40.04 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.17 Total: -20.89 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.53 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.90 -7.62 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320215489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.584 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds