Wall clock time and date at job start Tue Mar 31 2020 17:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47598 * 2 1 4 4 N 1.46503 * 109.47097 * 240.00473 * 2 1 3 5 5 C 1.34775 * 120.00291 * 85.00031 * 4 2 1 6 6 O 1.21362 * 119.99821 * 0.02562 * 5 4 2 7 7 C 1.49313 * 119.99975 * 180.27780 * 5 4 2 8 8 O 1.21393 * 120.00371 * 359.72507 * 7 5 4 9 9 N 1.34786 * 119.99997 * 179.72390 * 7 5 4 10 10 C 1.39738 * 119.99794 * 185.13896 * 9 7 5 11 11 C 1.38999 * 120.00386 * 213.23050 * 10 9 7 12 12 C 1.37964 * 119.99132 * 179.74295 * 11 10 9 13 13 C 1.38931 * 120.00959 * 0.50988 * 12 11 10 14 14 O 1.35765 * 119.99664 * 179.74729 * 13 12 11 15 15 C 1.34801 * 117.00144 * 185.78785 * 14 13 12 16 16 H 1.07997 * 119.99928 * 5.40742 * 15 14 13 17 17 C 1.38646 * 119.99852 * 185.40801 * 15 14 13 18 18 N 1.31562 * 119.99844 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00098 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47069 * 90.00081 * 19 17 15 21 21 H 1.48507 * 109.47020 * 210.00254 * 19 17 15 22 22 H 1.48495 * 109.47205 * 329.99909 * 19 17 15 23 23 C 1.38941 * 120.01268 * 359.76429 * 13 12 11 24 24 C 1.37967 * 120.00641 * 359.97438 * 23 13 12 25 25 C 1.53000 * 109.47237 * 120.00597 * 2 1 3 26 26 C 1.53781 * 113.61100 * 274.49567 * 25 2 1 27 27 C 1.53963 * 87.01977 * 220.04822 * 26 25 2 28 28 C 1.53780 * 87.10933 * 25.36482 * 27 26 25 29 29 H 1.08998 * 109.47284 * 64.90103 * 1 2 3 30 30 H 1.08995 * 109.47332 * 184.90333 * 1 2 3 31 31 H 1.09009 * 109.46563 * 304.90824 * 1 2 3 32 32 H 0.97004 * 119.99695 * 265.00275 * 4 2 1 33 33 H 0.97002 * 119.99643 * 5.13643 * 9 7 5 34 34 H 1.08000 * 119.99958 * 359.97438 * 11 10 9 35 35 H 1.08003 * 119.99333 * 180.25030 * 12 11 10 36 36 H 0.96997 * 120.00084 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.99713 * 179.97438 * 23 13 12 38 38 H 1.07998 * 120.00337 * 179.97438 * 24 23 13 39 39 H 1.08999 * 112.85197 * 45.68995 * 25 2 1 40 40 H 1.09003 * 113.61976 * 334.56450 * 26 25 2 41 41 H 1.09001 * 113.61418 * 105.47238 * 26 25 2 42 42 H 1.08997 * 113.53506 * 270.81077 * 27 26 25 43 43 H 1.09000 * 113.74234 * 139.94749 * 27 26 25 44 44 H 1.08998 * 113.61503 * 220.09231 * 28 27 26 45 45 H 1.08994 * 113.61450 * 89.19071 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8589 1.1595 -2.4115 7 6 2.6389 -0.7235 -3.5779 8 8 2.9275 -1.9013 -3.5235 9 7 2.7623 -0.0524 -4.7402 10 6 3.1191 -0.7347 -5.9064 11 6 3.8918 -0.1019 -6.8731 12 6 4.2484 -0.7775 -8.0219 13 6 3.8263 -2.0866 -8.2175 14 8 4.1730 -2.7495 -9.3505 15 6 3.6335 -3.9711 -9.5342 16 1 2.8925 -4.3438 -8.8425 17 6 4.0301 -4.7492 -10.6110 18 7 3.5040 -5.9417 -10.7900 19 14 5.3114 -4.1044 -11.8077 20 1 6.6655 -4.4986 -11.3428 21 1 5.0638 -4.6784 -13.1548 22 1 5.2233 -2.6237 -11.8768 23 6 3.0490 -2.7175 -7.2540 24 6 2.6967 -2.0443 -6.1024 25 6 2.0400 -0.7214 1.2492 26 6 2.1412 0.1863 2.4864 27 6 3.4601 -0.5387 2.8109 28 6 3.5719 -0.8434 1.3077 29 1 -0.3634 0.4359 -0.9306 30 1 -0.3634 -1.0238 0.0878 31 1 -0.3633 0.5882 0.8429 32 1 2.2490 -1.6317 -1.1527 33 1 2.6035 0.9042 -4.7672 34 1 4.2162 0.9173 -6.7231 35 1 4.8522 -0.2872 -8.7713 36 1 3.7811 -6.4859 -11.5436 37 1 2.7207 -3.7351 -7.4065 38 1 2.0922 -2.5346 -5.3537 39 1 1.5196 -1.6603 1.4379 40 1 2.2709 1.2412 2.2447 41 1 1.3545 0.0128 3.2207 42 1 3.3279 -1.4274 3.4280 43 1 4.2440 0.1215 3.1821 44 1 3.9385 -1.8470 1.0917 45 1 4.0934 -0.0706 0.7432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320215489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:06 Heat of formation + Delta-G solvation = -69.176472 kcal Electronic energy + Delta-G solvation = -27286.777196 eV Core-core repulsion = 23270.061134 eV Total energy + Delta-G solvation = -4016.716061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.15061 -41.02802 -40.31332 -39.39898 -38.30581 -36.27009 -35.33016 -34.37505 -31.99521 -31.84889 -30.08893 -27.46256 -26.94350 -26.29027 -25.78074 -24.09136 -23.03843 -22.09633 -21.43137 -20.61120 -20.06754 -19.49341 -19.09695 -18.39388 -17.51967 -17.14285 -17.01815 -16.40493 -16.16916 -15.82388 -15.79294 -15.70382 -15.48292 -15.17511 -15.03967 -14.48791 -14.24811 -14.18372 -14.01548 -13.55483 -13.48577 -13.36304 -13.32557 -13.14681 -12.83563 -12.76167 -12.69859 -12.52848 -12.23823 -11.99565 -11.49325 -11.46939 -11.31335 -11.21805 -11.15620 -10.80371 -10.64514 -10.27769 -9.91587 -8.75909 -8.49840 -6.21966 0.01493 0.46619 0.67199 1.22053 1.33674 1.37969 1.54302 2.05186 2.29091 2.52904 2.73486 3.06619 3.08334 3.30225 3.61630 3.67140 3.78264 3.99464 4.00934 4.04605 4.22600 4.27715 4.38532 4.41199 4.53100 4.59307 4.69012 4.85127 4.87175 4.88773 4.96011 4.97373 5.08619 5.11484 5.13320 5.22312 5.24574 5.28210 5.35597 5.38488 5.51875 5.60426 5.71485 5.81934 5.91877 6.13810 6.29722 6.69282 6.83745 6.87436 7.55518 8.61638 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.002004 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.226240 B =13969.207727 C =14288.268230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.084 0.916 4 N -0.682 5.682 5 C 0.520 3.480 6 O -0.536 6.536 7 C 0.498 3.502 8 O -0.530 6.530 9 N -0.621 5.621 10 C 0.061 3.939 11 C -0.074 4.074 12 C -0.165 4.165 13 C 0.117 3.883 14 O -0.237 6.237 15 C -0.399 4.399 16 H 0.079 0.921 17 C 0.008 3.992 18 N -0.922 5.922 19 Si 0.974 3.026 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.257 1.257 23 C -0.219 4.219 24 C -0.075 4.075 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.141 4.141 28 C -0.143 4.143 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.417 0.583 33 H 0.430 0.570 34 H 0.171 0.829 35 H 0.147 0.853 36 H 0.285 0.715 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.481 15.609 26.136 30.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 H 0.102 0.898 4 N -0.334 5.334 5 C 0.300 3.700 6 O -0.414 6.414 7 C 0.280 3.720 8 O -0.406 6.406 9 N -0.268 5.268 10 C -0.033 4.033 11 C -0.093 4.093 12 C -0.185 4.185 13 C 0.067 3.933 14 O -0.144 6.144 15 C -0.475 4.475 16 H 0.096 0.904 17 C -0.190 4.190 18 N -0.563 5.563 19 Si 0.795 3.205 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.181 1.181 23 C -0.239 4.239 24 C -0.095 4.095 25 C -0.135 4.135 26 C -0.162 4.162 27 C -0.178 4.178 28 C -0.181 4.181 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.254 0.746 33 H 0.270 0.730 34 H 0.188 0.812 35 H 0.165 0.835 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.141 0.859 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.394 15.506 25.897 30.280 hybrid contribution 0.130 -0.741 -0.715 1.038 sum -2.265 14.766 25.182 29.280 Atomic orbital electron populations 1.22159 0.94048 1.03105 1.02567 1.21305 0.94848 0.96850 0.82420 0.89790 1.45879 1.63848 1.15237 1.08394 1.19667 0.79189 0.86603 0.84563 1.90758 1.49976 1.15701 1.84962 1.20531 0.79293 0.87146 0.85052 1.90809 1.48095 1.16546 1.85166 1.42836 1.65667 1.13129 1.05172 1.17419 1.03684 0.93420 0.88728 1.20846 0.95542 1.01136 0.91810 1.20383 1.06163 0.91318 1.00600 1.19716 0.94680 0.92926 0.85942 1.83519 1.64402 1.30171 1.36334 1.20673 1.22460 0.90985 1.13429 0.90394 1.25339 1.00005 0.94536 0.99153 1.69739 1.44448 1.10314 1.31780 0.85174 0.78269 0.79597 0.77425 1.19210 1.19313 1.18120 1.21104 1.05595 1.01310 0.95886 1.20773 0.98631 0.94238 0.95810 1.22932 0.96594 1.00496 0.93523 1.22922 0.98235 0.98780 0.96256 1.22854 0.98033 1.01076 0.95834 1.22926 0.95551 1.02019 0.97584 0.93841 0.91462 0.89489 0.74589 0.73013 0.81152 0.83544 0.90540 0.87108 0.85868 0.87355 0.89801 0.89886 0.89358 0.91215 0.91375 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.48 71.98 0.68 -1.29 16 2 C 0.15 1.97 2.39 44.99 0.11 2.08 16 3 H 0.08 1.30 7.32 -2.39 -0.02 1.29 16 4 N -0.68 -11.71 4.75 -444.00 -2.11 -13.81 16 5 C 0.52 11.67 7.85 87.23 0.68 12.35 16 6 O -0.54 -13.43 16.14 -3.28 -0.05 -13.49 16 7 C 0.50 13.30 7.62 87.23 0.66 13.97 16 8 O -0.53 -17.13 14.16 -3.38 -0.05 -17.17 16 9 N -0.62 -15.82 5.32 -304.74 -1.62 -17.44 16 10 C 0.06 1.93 6.28 38.24 0.24 2.17 16 11 C -0.07 -2.13 9.96 22.39 0.22 -1.90 16 12 C -0.17 -5.91 9.98 22.37 0.22 -5.69 16 13 C 0.12 5.40 6.65 22.60 0.15 5.55 16 14 O -0.24 -12.67 8.58 -22.61 -0.19 -12.86 16 15 C -0.40 -23.51 9.90 67.92 0.67 -22.84 16 16 H 0.08 4.86 5.52 -2.91 -0.02 4.85 16 17 C 0.01 0.47 5.49 84.83 0.47 0.94 16 18 N -0.92 -55.26 13.96 21.61 0.30 -54.96 16 19 Si 0.97 44.98 28.62 68.60 1.96 46.95 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 C -0.22 -9.98 9.13 22.37 0.20 -9.78 16 24 C -0.07 -2.88 8.64 22.39 0.19 -2.68 16 25 C -0.12 -1.10 3.21 -10.27 -0.03 -1.13 16 26 C -0.12 -0.94 7.65 31.18 0.24 -0.70 16 27 C -0.14 -1.19 8.09 31.18 0.25 -0.94 16 28 C -0.14 -1.59 7.33 31.12 0.23 -1.36 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.42 6.71 8.07 -92.71 -0.75 5.96 16 33 H 0.43 8.55 8.29 -92.71 -0.77 7.79 16 34 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.11 5.58 5.71 -2.91 -0.02 5.57 16 38 H 0.12 4.70 6.42 -2.91 -0.02 4.69 16 39 H 0.11 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.66 7.92 -2.39 -0.02 0.64 16 41 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 Total: -1.00 -70.30 379.40 2.96 -67.34 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: -0.48 Total: 26.70 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 5.20 Total: -11.25 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -3.43 Total: -86.21 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -0.29 Total: -43.52 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.96 Total: 46.95 kcal Total: -70.30 2.96 -67.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320215489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.837 kcal (2) G-P(sol) polarization free energy of solvation -70.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds