Wall clock time and date at job start Tue Mar 31 2020 17:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08992 * 110.00075 * 2 1 4 4 C 1.54310 * 109.77716 * 121.15777 * 2 1 3 5 5 C 1.55158 * 102.86677 * 141.88498 * 4 2 1 6 6 C 1.54913 * 101.57979 * 324.30242 * 5 4 2 7 7 H 1.08992 * 110.36871 * 278.17130 * 6 5 4 8 8 C 1.53004 * 110.36629 * 155.84707 * 6 5 4 9 9 N 1.47030 * 109.88052 * 238.90552 * 2 1 3 10 10 C 1.34769 * 125.64768 * 61.68115 * 9 2 1 11 11 O 1.21366 * 120.00032 * 185.10767 * 10 9 2 12 12 C 1.49320 * 120.00029 * 4.83020 * 10 9 2 13 13 O 1.21384 * 119.99934 * 6.48717 * 12 10 9 14 14 N 1.34777 * 119.99920 * 186.48664 * 12 10 9 15 15 C 1.39742 * 120.00095 * 185.32984 * 14 12 10 16 16 C 1.38995 * 120.01130 * 211.24640 * 15 14 12 17 17 C 1.37965 * 119.99543 * 179.74563 * 16 15 14 18 18 C 1.38938 * 120.00546 * 0.50443 * 17 16 15 19 19 O 1.35753 * 119.99311 * 179.74672 * 18 17 16 20 20 C 1.34807 * 117.00140 * 186.65038 * 19 18 17 21 21 H 1.08001 * 119.99452 * 5.75900 * 20 19 18 22 22 C 1.38649 * 119.99967 * 185.75357 * 20 19 18 23 23 N 1.31554 * 120.00535 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99645 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46661 * 60.00441 * 24 22 20 26 26 H 1.48503 * 109.46949 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47226 * 300.00576 * 24 22 20 28 28 C 1.38933 * 120.01284 * 359.77008 * 18 17 16 29 29 C 1.37967 * 120.00894 * 359.97438 * 28 18 17 30 30 H 1.08998 * 109.47182 * 190.14649 * 1 2 3 31 31 H 1.08998 * 109.47275 * 310.14623 * 1 2 3 32 32 H 1.09003 * 109.47401 * 70.14780 * 1 2 3 33 33 H 1.09003 * 110.92780 * 23.47048 * 4 2 1 34 34 H 1.09004 * 110.59014 * 260.14506 * 4 2 1 35 35 H 1.08998 * 111.00354 * 206.23151 * 5 4 2 36 36 H 1.09000 * 111.04076 * 82.39116 * 5 4 2 37 37 H 1.09002 * 109.47083 * 304.59201 * 8 6 5 38 38 H 1.08999 * 109.46700 * 64.58909 * 8 6 5 39 39 H 1.08997 * 109.46957 * 184.59482 * 8 6 5 40 40 H 0.97007 * 120.00401 * 5.33783 * 14 12 10 41 41 H 1.08009 * 120.00247 * 359.97281 * 16 15 14 42 42 H 1.08001 * 120.00216 * 180.27447 * 17 16 15 43 43 H 0.96995 * 120.00456 * 179.97438 * 23 22 20 44 44 H 1.08001 * 119.99693 * 179.97438 * 28 18 17 45 45 H 1.08004 * 120.00336 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0521 -0.7513 1.2426 5 6 3.2889 -1.5101 0.6932 6 6 2.8190 -1.8763 -0.7369 7 1 2.1971 -2.7711 -0.7144 8 6 4.0242 -2.0870 -1.6557 9 7 2.0299 -0.7141 -1.1840 10 6 1.8085 -0.3612 -2.4657 11 8 2.1928 -1.0771 -3.3673 12 6 1.0848 0.9074 -2.7764 13 8 0.8000 1.6781 -1.8830 14 7 0.7480 1.1967 -4.0490 15 6 0.1712 2.4321 -4.3555 16 6 -0.7353 2.5352 -5.4041 17 6 -1.3084 3.7540 -5.7031 18 6 -0.9717 4.8804 -4.9628 19 8 -1.5319 6.0806 -5.2605 20 6 -1.0622 7.1565 -4.5979 21 1 -0.2135 7.0558 -3.9376 22 6 -1.6685 8.3923 -4.7644 23 7 -2.7024 8.5148 -5.5684 24 14 -1.0179 9.8830 -3.8456 25 1 0.3964 10.1227 -4.2296 26 1 -1.8335 11.0741 -4.1942 27 1 -1.0990 9.6375 -2.3834 28 6 -0.0613 4.7789 -3.9182 29 6 0.5083 3.5593 -3.6154 30 1 -0.3633 -1.0116 0.1810 31 1 -0.3634 0.6626 0.7855 32 1 -0.3634 0.3490 -0.9666 33 1 1.3050 -1.4514 1.6168 34 1 2.3461 -0.0470 2.0209 35 1 3.4897 -2.4065 1.2799 36 1 4.1643 -0.8615 0.6627 37 1 4.6563 -1.1993 -1.6351 38 1 4.5966 -2.9487 -1.3122 39 1 3.6781 -2.2631 -2.6741 40 1 0.9057 0.5473 -4.7521 41 1 -0.9937 1.6604 -5.9825 42 1 -2.0162 3.8333 -6.5150 43 1 -3.1268 9.3793 -5.6846 44 1 0.2007 5.6548 -3.3432 45 1 1.2163 3.4806 -2.8036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320610534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:25 Heat of formation + Delta-G solvation = -54.062133 kcal Electronic energy + Delta-G solvation = -28325.645425 eV Core-core repulsion = 24309.584771 eV Total energy + Delta-G solvation = -4016.060655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.22124 -39.69741 -38.61299 -37.84932 -36.60354 -34.09616 -32.93444 -32.22791 -31.92839 -30.27355 -28.70656 -28.25823 -25.65350 -24.89540 -24.28358 -22.68033 -22.07178 -21.44653 -20.64899 -19.40759 -18.13198 -17.71129 -17.26911 -16.93517 -16.60579 -16.13695 -15.62844 -14.97023 -14.56794 -14.40766 -14.28601 -13.96873 -13.77266 -13.62771 -13.56831 -13.51522 -13.26038 -13.04379 -12.83016 -12.56474 -12.30706 -12.08314 -11.84142 -11.80667 -11.63772 -11.57549 -11.42183 -11.10410 -11.04862 -10.89465 -10.88635 -10.75558 -10.47976 -9.70862 -9.53438 -9.24351 -8.97440 -8.73089 -8.26699 -6.98318 -6.48095 -4.05449 1.28111 2.12785 2.16046 2.32833 3.12162 3.13064 3.16436 3.24178 3.41808 3.95016 4.15273 4.18757 4.44641 4.49613 4.53968 4.80968 4.91156 5.01736 5.07367 5.19653 5.20518 5.26762 5.36254 5.41634 5.49519 5.59069 5.62050 5.65714 5.67864 5.82113 5.88799 5.94807 6.01548 6.10143 6.17623 6.22853 6.25844 6.64237 6.74229 6.91178 6.97860 7.08064 7.22432 7.37853 7.39136 7.68726 7.74529 7.96448 8.11666 8.97315 9.66075 10.69529 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.002506 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.857388 B =11168.602496 C =11979.580525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.094 0.906 4 C -0.131 4.131 5 C -0.131 4.131 6 C 0.133 3.867 7 H 0.080 0.920 8 C -0.170 4.170 9 N -0.586 5.586 10 C 0.527 3.473 11 O -0.523 6.523 12 C 0.494 3.506 13 O -0.498 6.498 14 N -0.625 5.625 15 C 0.028 3.972 16 C -0.087 4.087 17 C -0.176 4.176 18 C 0.148 3.852 19 O -0.173 6.173 20 C -0.391 4.391 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.269 1.269 28 C -0.218 4.218 29 C -0.062 4.062 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.413 0.587 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.271 0.729 44 H 0.131 0.869 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.395 -19.708 11.427 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 H 0.112 0.888 4 C -0.169 4.169 5 C -0.169 4.169 6 C 0.031 3.969 7 H 0.098 0.902 8 C -0.227 4.227 9 N -0.321 5.321 10 C 0.310 3.690 11 O -0.399 6.399 12 C 0.275 3.725 13 O -0.373 6.373 14 N -0.270 5.270 15 C -0.064 4.064 16 C -0.107 4.107 17 C -0.196 4.196 18 C 0.094 3.906 19 O -0.076 6.076 20 C -0.467 4.467 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.765 3.235 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.194 1.194 28 C -0.238 4.238 29 C -0.082 4.082 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.249 0.751 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.149 0.851 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.060 -19.255 11.271 24.475 hybrid contribution 0.372 0.433 0.236 0.617 sum 10.432 -18.822 11.507 24.403 Atomic orbital electron populations 1.22268 0.94031 1.01235 1.04274 1.21817 0.95224 0.96886 0.83293 0.88830 1.22797 0.97606 0.99679 0.96797 1.22892 0.98273 1.01180 0.94513 1.22011 0.92603 0.88358 0.93976 0.90219 1.22197 0.96629 1.01894 1.02000 1.48455 1.50654 1.28110 1.04866 1.19810 0.80797 0.86297 0.82049 1.90694 1.51478 1.52760 1.44995 1.19953 0.81481 0.87373 0.83678 1.90766 1.51792 1.49720 1.45042 1.42884 1.58739 1.16978 1.08426 1.17229 1.02812 0.83932 1.02468 1.20355 0.95737 0.97136 0.97511 1.19994 1.05665 0.90595 1.03374 1.19446 0.91887 0.87183 0.92127 1.83984 1.54814 1.11536 1.57304 1.21290 1.14365 0.84539 1.26532 0.89059 1.25297 0.95736 0.98355 0.97066 1.70021 1.19922 1.25504 1.34065 0.85781 0.78812 0.79429 0.79448 1.19446 1.20253 1.19423 1.21072 1.03317 0.98026 1.01422 1.20733 0.98483 0.90578 0.98427 0.93196 0.91220 0.90889 0.90295 0.89725 0.89644 0.90288 0.92498 0.91684 0.89408 0.75104 0.86474 0.85863 0.91884 0.85089 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.72 37.15 0.32 -1.38 16 2 C 0.13 1.30 2.81 -66.96 -0.19 1.11 16 3 H 0.09 1.06 7.20 -51.93 -0.37 0.69 16 4 C -0.13 -0.87 6.46 -24.90 -0.16 -1.03 16 5 C -0.13 -0.80 6.50 -24.58 -0.16 -0.96 16 6 C 0.13 1.14 3.75 -66.41 -0.25 0.89 16 7 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 8 C -0.17 -1.49 8.82 37.16 0.33 -1.16 16 9 N -0.59 -6.48 2.98 -156.16 -0.47 -6.94 16 10 C 0.53 7.06 7.40 -11.65 -0.09 6.98 16 11 O -0.52 -7.55 14.30 5.48 0.08 -7.48 16 12 C 0.49 7.35 6.76 -11.65 -0.08 7.27 16 13 O -0.50 -8.16 9.81 5.47 0.05 -8.11 16 14 N -0.62 -9.28 5.32 -10.27 -0.05 -9.33 16 15 C 0.03 0.49 6.31 -83.69 -0.53 -0.03 16 16 C -0.09 -1.52 9.95 -39.40 -0.39 -1.91 16 17 C -0.18 -3.61 9.98 -39.42 -0.39 -4.01 16 18 C 0.15 3.53 6.65 -39.06 -0.26 3.27 16 19 O -0.17 -4.88 9.75 0.10 0.00 -4.88 16 20 C -0.39 -10.82 9.43 30.88 0.29 -10.53 16 21 H 0.09 2.34 5.32 -52.49 -0.28 2.06 16 22 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -24.98 13.67 55.48 0.76 -24.22 16 24 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 C -0.22 -4.81 9.12 -39.42 -0.36 -5.17 16 29 C -0.06 -1.22 8.65 -39.40 -0.34 -1.56 16 30 H 0.05 0.46 7.91 -51.93 -0.41 0.05 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.98 5.19 -51.93 -0.27 0.71 16 33 H 0.08 0.46 7.71 -51.93 -0.40 0.06 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 37 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.98 5.85 -51.93 -0.30 0.67 16 40 H 0.41 5.22 8.32 -40.82 -0.34 4.88 16 41 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 42 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 43 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.13 2.89 5.73 -52.49 -0.30 2.59 16 45 H 0.12 2.31 6.27 -52.48 -0.33 1.98 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -31.42 364.31 -7.45 -38.87 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.94 Total: 8.48 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.35 Total: -7.23 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.24 Total: -40.50 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.13 Total: -20.46 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.42 -7.45 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320610534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.187 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds