Wall clock time and date at job start Tue Mar 31 2020 17:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08992 * 110.00075 * 2 1 4 4 C 1.54310 * 109.77716 * 121.15777 * 2 1 3 5 5 C 1.55158 * 102.86677 * 141.88498 * 4 2 1 6 6 C 1.54913 * 101.57979 * 324.30242 * 5 4 2 7 7 H 1.08992 * 110.36871 * 278.17130 * 6 5 4 8 8 C 1.53004 * 110.36629 * 155.84707 * 6 5 4 9 9 N 1.47030 * 109.88052 * 238.90552 * 2 1 3 10 10 C 1.34769 * 125.64768 * 61.68115 * 9 2 1 11 11 O 1.21366 * 120.00032 * 185.10767 * 10 9 2 12 12 C 1.49320 * 120.00029 * 4.83020 * 10 9 2 13 13 O 1.21384 * 119.99934 * 6.48717 * 12 10 9 14 14 N 1.34777 * 119.99920 * 186.48664 * 12 10 9 15 15 C 1.39742 * 120.00095 * 185.32984 * 14 12 10 16 16 C 1.38995 * 120.01130 * 211.24640 * 15 14 12 17 17 C 1.37965 * 119.99543 * 179.74563 * 16 15 14 18 18 C 1.38938 * 120.00546 * 0.50443 * 17 16 15 19 19 O 1.35753 * 119.99311 * 179.74672 * 18 17 16 20 20 C 1.34807 * 117.00140 * 186.65038 * 19 18 17 21 21 H 1.08001 * 119.99452 * 5.75900 * 20 19 18 22 22 C 1.38649 * 119.99967 * 185.75357 * 20 19 18 23 23 N 1.31554 * 120.00535 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99645 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46661 * 60.00441 * 24 22 20 26 26 H 1.48503 * 109.46949 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47226 * 300.00576 * 24 22 20 28 28 C 1.38933 * 120.01284 * 359.77008 * 18 17 16 29 29 C 1.37967 * 120.00894 * 359.97438 * 28 18 17 30 30 H 1.08998 * 109.47182 * 190.14649 * 1 2 3 31 31 H 1.08998 * 109.47275 * 310.14623 * 1 2 3 32 32 H 1.09003 * 109.47401 * 70.14780 * 1 2 3 33 33 H 1.09003 * 110.92780 * 23.47048 * 4 2 1 34 34 H 1.09004 * 110.59014 * 260.14506 * 4 2 1 35 35 H 1.08998 * 111.00354 * 206.23151 * 5 4 2 36 36 H 1.09000 * 111.04076 * 82.39116 * 5 4 2 37 37 H 1.09002 * 109.47083 * 304.59201 * 8 6 5 38 38 H 1.08999 * 109.46700 * 64.58909 * 8 6 5 39 39 H 1.08997 * 109.46957 * 184.59482 * 8 6 5 40 40 H 0.97007 * 120.00401 * 5.33783 * 14 12 10 41 41 H 1.08009 * 120.00247 * 359.97281 * 16 15 14 42 42 H 1.08001 * 120.00216 * 180.27447 * 17 16 15 43 43 H 0.96995 * 120.00456 * 179.97438 * 23 22 20 44 44 H 1.08001 * 119.99693 * 179.97438 * 28 18 17 45 45 H 1.08004 * 120.00336 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0521 -0.7513 1.2426 5 6 3.2889 -1.5101 0.6932 6 6 2.8190 -1.8763 -0.7369 7 1 2.1971 -2.7711 -0.7144 8 6 4.0242 -2.0870 -1.6557 9 7 2.0299 -0.7141 -1.1840 10 6 1.8085 -0.3612 -2.4657 11 8 2.1928 -1.0771 -3.3673 12 6 1.0848 0.9074 -2.7764 13 8 0.8000 1.6781 -1.8830 14 7 0.7480 1.1967 -4.0490 15 6 0.1712 2.4321 -4.3555 16 6 -0.7353 2.5352 -5.4041 17 6 -1.3084 3.7540 -5.7031 18 6 -0.9717 4.8804 -4.9628 19 8 -1.5319 6.0806 -5.2605 20 6 -1.0622 7.1565 -4.5979 21 1 -0.2135 7.0558 -3.9376 22 6 -1.6685 8.3923 -4.7644 23 7 -2.7024 8.5148 -5.5684 24 14 -1.0179 9.8830 -3.8456 25 1 0.3964 10.1227 -4.2296 26 1 -1.8335 11.0741 -4.1942 27 1 -1.0990 9.6375 -2.3834 28 6 -0.0613 4.7789 -3.9182 29 6 0.5083 3.5593 -3.6154 30 1 -0.3633 -1.0116 0.1810 31 1 -0.3634 0.6626 0.7855 32 1 -0.3634 0.3490 -0.9666 33 1 1.3050 -1.4514 1.6168 34 1 2.3461 -0.0470 2.0209 35 1 3.4897 -2.4065 1.2799 36 1 4.1643 -0.8615 0.6627 37 1 4.6563 -1.1993 -1.6351 38 1 4.5966 -2.9487 -1.3122 39 1 3.6781 -2.2631 -2.6741 40 1 0.9057 0.5473 -4.7521 41 1 -0.9937 1.6604 -5.9825 42 1 -2.0162 3.8333 -6.5150 43 1 -3.1268 9.3793 -5.6846 44 1 0.2007 5.6548 -3.3432 45 1 1.2163 3.4806 -2.8036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320610534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:20 Heat of formation + Delta-G solvation = -74.273963 kcal Electronic energy + Delta-G solvation = -28326.521876 eV Core-core repulsion = 24309.584771 eV Total energy + Delta-G solvation = -4016.937105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.30 seconds Orbital eigenvalues (eV) -42.32043 -41.03223 -40.11212 -38.83071 -38.21709 -35.54699 -34.18419 -33.68859 -32.72871 -31.91847 -29.95896 -29.32831 -27.44645 -26.22330 -24.94636 -24.11456 -23.46002 -22.34188 -21.84751 -20.62733 -19.84256 -19.14256 -18.45076 -18.29032 -17.65481 -17.33641 -16.84033 -16.29922 -16.17578 -15.90428 -15.53017 -15.30384 -15.04352 -15.01839 -14.71390 -14.47321 -14.20536 -14.16139 -14.00294 -13.82019 -13.55263 -13.35243 -13.24212 -13.05843 -12.76010 -12.65940 -12.59243 -12.47617 -12.30008 -12.15433 -11.78293 -11.64247 -11.62579 -11.37382 -11.13519 -10.64634 -10.46797 -9.89559 -9.85821 -8.66574 -8.47739 -6.14440 0.04777 0.49615 0.72172 1.17630 1.35574 1.45686 1.51332 2.04504 2.17662 2.36582 2.79432 3.12710 3.18160 3.48125 3.54356 3.67480 3.93830 4.03696 4.06982 4.09197 4.28552 4.32513 4.44519 4.45687 4.54601 4.60241 4.63403 4.72369 4.78132 4.90832 4.96717 5.03341 5.05831 5.10919 5.14849 5.18324 5.24322 5.26314 5.32963 5.36194 5.47945 5.50126 5.65847 5.95964 6.00789 6.11160 6.22598 6.63568 6.89193 6.96942 7.75198 8.74758 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.002506 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.857388 B =11168.602496 C =11979.580525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 H 0.075 0.925 4 C -0.122 4.122 5 C -0.120 4.120 6 C 0.124 3.876 7 H 0.091 0.909 8 C -0.165 4.165 9 N -0.581 5.581 10 C 0.527 3.473 11 O -0.536 6.536 12 C 0.494 3.506 13 O -0.512 6.512 14 N -0.622 5.622 15 C 0.055 3.945 16 C -0.075 4.075 17 C -0.178 4.178 18 C 0.111 3.889 19 O -0.224 6.224 20 C -0.414 4.414 21 H 0.099 0.901 22 C -0.019 4.019 23 N -0.917 5.917 24 Si 1.016 2.984 25 H -0.258 1.258 26 H -0.270 1.270 27 H -0.259 1.259 28 C -0.223 4.223 29 C -0.070 4.070 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.427 0.573 41 H 0.164 0.836 42 H 0.131 0.869 43 H 0.274 0.726 44 H 0.122 0.878 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.176 -22.550 13.554 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.094 0.906 4 C -0.160 4.160 5 C -0.158 4.158 6 C 0.023 3.977 7 H 0.109 0.891 8 C -0.223 4.223 9 N -0.315 5.315 10 C 0.309 3.691 11 O -0.414 6.414 12 C 0.277 3.723 13 O -0.387 6.387 14 N -0.269 5.269 15 C -0.038 4.038 16 C -0.094 4.094 17 C -0.197 4.197 18 C 0.060 3.940 19 O -0.130 6.130 20 C -0.490 4.490 21 H 0.117 0.883 22 C -0.218 4.218 23 N -0.555 5.555 24 Si 0.835 3.165 25 H -0.182 1.182 26 H -0.195 1.195 27 H -0.183 1.183 28 C -0.243 4.243 29 C -0.090 4.090 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.266 0.734 41 H 0.181 0.819 42 H 0.149 0.851 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.882 -22.183 13.432 28.525 hybrid contribution -0.064 0.900 -0.347 0.966 sum 11.818 -21.283 13.084 27.638 Atomic orbital electron populations 1.22212 0.94572 1.02046 1.02597 1.21942 0.94803 0.96643 0.84474 0.90649 1.22796 0.98038 0.99898 0.95242 1.22904 0.97797 1.02292 0.92824 1.22332 0.92372 0.87697 0.95338 0.89150 1.22139 0.96805 1.02576 1.00755 1.48620 1.49938 1.28638 1.04271 1.19432 0.81034 0.85609 0.82994 1.90702 1.52274 1.52890 1.45569 1.20391 0.80777 0.87911 0.83269 1.90771 1.51961 1.50444 1.45554 1.42832 1.58718 1.16156 1.09211 1.17356 1.00983 0.84522 1.00918 1.20741 0.94137 0.97372 0.97185 1.20296 1.05714 0.90682 1.03032 1.19955 0.93102 0.87194 0.93775 1.83947 1.56954 1.12798 1.59341 1.21738 1.15103 0.85316 1.26846 0.88347 1.26540 0.95906 1.01398 0.97910 1.70159 1.22124 1.26438 1.36744 0.84691 0.78548 0.75040 0.78238 1.18212 1.19474 1.18300 1.21077 1.03352 0.98777 1.01128 1.20809 0.98712 0.90361 0.99117 0.91712 0.90804 0.93984 0.88825 0.88344 0.86775 0.90327 0.93361 0.89150 0.91888 0.73421 0.81898 0.85138 0.91736 0.86061 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.72 71.98 0.63 -2.44 16 2 C 0.12 2.21 2.81 45.33 0.13 2.34 16 3 H 0.08 1.63 7.20 -2.39 -0.02 1.62 16 4 C -0.12 -1.18 6.46 31.78 0.21 -0.97 16 5 C -0.12 -1.01 6.50 31.99 0.21 -0.80 16 6 C 0.12 1.75 3.75 45.47 0.17 1.92 16 7 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 8 C -0.17 -2.52 8.82 71.98 0.64 -1.88 16 9 N -0.58 -11.70 2.98 -766.33 -2.28 -13.98 16 10 C 0.53 13.35 7.40 87.23 0.65 13.99 16 11 O -0.54 -14.70 14.30 -3.30 -0.05 -14.75 16 12 C 0.49 14.08 6.76 87.23 0.59 14.67 16 13 O -0.51 -16.41 9.81 -3.35 -0.03 -16.44 16 14 N -0.62 -17.23 5.32 -304.75 -1.62 -18.85 16 15 C 0.06 1.87 6.31 38.24 0.24 2.12 16 16 C -0.07 -2.44 9.95 22.39 0.22 -2.21 16 17 C -0.18 -7.28 9.98 22.37 0.22 -7.05 16 18 C 0.11 5.49 6.65 22.60 0.15 5.64 16 19 O -0.22 -13.37 9.75 -22.54 -0.22 -13.59 16 20 C -0.41 -24.13 9.43 67.92 0.64 -23.49 16 21 H 0.10 5.31 5.32 -2.91 -0.02 5.30 16 22 C -0.02 -1.10 5.49 84.83 0.47 -0.64 16 23 N -0.92 -55.95 13.67 21.61 0.30 -55.65 16 24 Si 1.02 42.94 29.55 68.60 2.03 44.97 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 28 C -0.22 -10.14 9.12 22.37 0.20 -9.94 16 29 C -0.07 -2.72 8.65 22.39 0.19 -2.53 16 30 H 0.06 1.05 7.91 -2.39 -0.02 1.03 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.09 5.19 -2.39 -0.01 1.08 16 33 H 0.09 0.68 7.71 -2.39 -0.02 0.67 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.08 0.71 8.04 -2.39 -0.02 0.69 16 37 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 1.31 5.85 -2.39 -0.01 1.29 16 40 H 0.43 9.68 8.32 -92.70 -0.77 8.91 16 41 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 42 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.12 5.63 5.73 -2.91 -0.02 5.61 16 45 H 0.13 4.83 6.27 -2.91 -0.02 4.81 16 Total: -1.00 -73.25 364.31 3.93 -69.32 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 0.27 Total: 30.25 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 5.55 Total: -11.28 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -3.61 Total: -88.48 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.30 Total: -44.78 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -73.25 3.93 -69.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320610534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.953 kcal (2) G-P(sol) polarization free energy of solvation -73.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds