Wall clock time and date at job start Tue Mar 31 2020 17:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.41617 * 2 1 4 4 C 1.54697 * 110.39442 * 237.84846 * 2 1 3 5 5 C 1.55155 * 101.67820 * 204.36671 * 4 2 1 6 6 C 1.54329 * 102.94429 * 35.33228 * 5 4 2 7 7 H 1.09003 * 109.88013 * 97.22427 * 6 5 4 8 8 C 1.52992 * 110.01045 * 218.31957 * 6 5 4 9 9 N 1.47027 * 107.26945 * 337.80920 * 6 5 4 10 10 C 1.34775 * 125.64554 * 178.90004 * 9 6 5 11 11 O 1.21364 * 119.99897 * 179.28111 * 10 9 6 12 12 C 1.49319 * 119.99989 * 359.27674 * 10 9 6 13 13 O 1.21389 * 120.00187 * 353.69421 * 12 10 9 14 14 N 1.34780 * 120.00036 * 173.68767 * 12 10 9 15 15 C 1.39738 * 120.00003 * 185.82927 * 14 12 10 16 16 C 1.39003 * 120.00689 * 142.21605 * 15 14 12 17 17 C 1.37964 * 119.99219 * 180.27666 * 16 15 14 18 18 C 1.38935 * 120.00751 * 359.45038 * 17 16 15 19 19 O 1.35757 * 119.99455 * 180.28097 * 18 17 16 20 20 C 1.34809 * 116.99921 * 353.33820 * 19 18 17 21 21 H 1.08003 * 119.99618 * 5.11737 * 20 19 18 22 22 C 1.38647 * 119.99804 * 185.10861 * 20 19 18 23 23 N 1.31562 * 119.99497 * 180.02562 * 22 20 19 24 24 Si 1.86791 * 120.00306 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47211 * 89.99757 * 24 22 20 26 26 H 1.48503 * 109.47355 * 209.99822 * 24 22 20 27 27 H 1.48503 * 109.47366 * 329.99917 * 24 22 20 28 28 C 1.38936 * 120.01280 * 0.29662 * 18 17 16 29 29 C 1.37967 * 120.00919 * 359.97438 * 28 18 17 30 30 H 1.08996 * 109.47327 * 305.51346 * 1 2 3 31 31 H 1.08994 * 109.46991 * 65.51808 * 1 2 3 32 32 H 1.09006 * 109.47127 * 185.51680 * 1 2 3 33 33 H 1.08997 * 111.10309 * 86.19059 * 4 2 1 34 34 H 1.09004 * 110.80977 * 322.40714 * 4 2 1 35 35 H 1.08998 * 110.71772 * 276.97063 * 5 4 2 36 36 H 1.08993 * 110.87261 * 153.76851 * 5 4 2 37 37 H 1.09002 * 109.47058 * 171.58259 * 8 6 5 38 38 H 1.08998 * 109.47312 * 291.57529 * 8 6 5 39 39 H 1.08995 * 109.47776 * 51.58104 * 8 6 5 40 40 H 0.96997 * 119.99545 * 5.83033 * 14 12 10 41 41 H 1.08002 * 120.00164 * 0.02562 * 16 15 14 42 42 H 1.08002 * 119.99303 * 179.72967 * 17 16 15 43 43 H 0.97001 * 119.99985 * 180.02562 * 23 22 20 44 44 H 1.08005 * 119.99374 * 179.97438 * 28 18 17 45 45 H 1.07994 * 120.00381 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7716 -1.2276 5 6 3.4759 -1.2024 -0.7349 6 6 3.2463 -1.4811 0.7655 7 1 3.0937 -2.5486 0.9251 8 6 4.4506 -1.0007 1.5776 9 7 2.0431 -0.7383 1.1684 10 6 1.4964 -0.7372 2.4003 11 8 0.5051 -0.0736 2.6237 12 6 2.1103 -1.5526 3.4902 13 8 3.0306 -2.3040 3.2413 14 7 1.6426 -1.4542 4.7504 15 6 2.2929 -2.1226 5.7911 16 6 2.4068 -1.5216 7.0393 17 6 3.0539 -2.1793 8.0650 18 6 3.5817 -3.4470 7.8537 19 8 4.2134 -4.0963 8.8648 20 6 4.4163 -3.4046 10.0040 21 1 4.0089 -2.4102 10.1117 22 6 5.1479 -3.9699 11.0372 23 7 5.3455 -3.2950 12.1491 24 14 5.8528 -5.6896 10.8507 25 1 7.2147 -5.6054 10.2646 26 1 5.9267 -6.3416 12.1829 27 1 4.9776 -6.4890 9.9562 28 6 3.4634 -4.0502 6.6077 29 6 2.8213 -3.3907 5.5800 30 1 -0.3634 0.5969 0.8365 31 1 -0.3633 0.4259 -0.9352 32 1 -0.3634 -1.0230 0.0988 33 1 2.1425 -0.1209 -2.0989 34 1 1.4473 -1.6408 -1.4424 35 1 4.1960 -0.3956 -0.8714 36 1 3.8078 -2.1046 -1.2484 37 1 4.2200 -1.0631 2.6411 38 1 5.3128 -1.6294 1.3554 39 1 4.6771 0.0326 1.3150 40 1 0.8547 -0.9195 4.9349 41 1 1.9923 -0.5381 7.2050 42 1 3.1462 -1.7105 9.0336 43 1 5.8576 -3.6902 12.8719 44 1 3.8742 -5.0355 6.4437 45 1 2.7291 -3.8598 4.6116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320610536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:42 Heat of formation + Delta-G solvation = -48.617808 kcal Electronic energy + Delta-G solvation = -28300.291383 eV Core-core repulsion = 24284.466812 eV Total energy + Delta-G solvation = -4015.824571 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.27839 -39.77136 -38.78315 -37.89507 -36.76500 -34.19434 -32.93570 -32.37973 -31.96006 -30.38568 -28.77961 -28.40165 -25.73374 -24.82587 -24.31242 -22.52759 -22.28597 -21.47147 -20.67626 -19.47700 -18.03420 -17.74026 -17.44417 -17.10699 -16.56428 -16.29188 -15.74952 -15.12858 -14.79952 -14.33796 -14.22419 -13.91733 -13.88675 -13.81274 -13.59818 -13.56101 -13.24670 -12.92581 -12.86302 -12.41284 -12.35727 -12.32480 -12.12119 -11.89315 -11.74731 -11.68154 -11.47944 -11.10503 -11.02063 -10.94136 -10.83005 -10.75924 -10.22293 -9.72281 -9.52442 -9.28696 -9.02138 -8.81529 -8.36932 -7.16632 -6.46264 -4.12129 1.24181 2.02059 2.05377 2.25958 3.15400 3.20640 3.24417 3.36847 3.38862 4.11588 4.16999 4.20499 4.37113 4.45658 4.47496 4.79407 4.81769 4.89889 4.99604 5.06161 5.17589 5.25730 5.35557 5.38653 5.43963 5.48369 5.58045 5.62151 5.67268 5.80927 5.86971 5.92647 5.94993 6.02510 6.07914 6.15245 6.32524 6.56991 6.67492 6.76169 6.94084 7.05109 7.15693 7.33267 7.49331 7.68006 7.72904 7.95764 8.06060 8.88597 9.49929 10.61037 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.002372 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.797685 B =11800.402988 C =12386.174034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.080 0.920 4 C -0.131 4.131 5 C -0.131 4.131 6 C 0.133 3.867 7 H 0.090 0.910 8 C -0.170 4.170 9 N -0.585 5.585 10 C 0.527 3.473 11 O -0.522 6.522 12 C 0.495 3.505 13 O -0.496 6.496 14 N -0.627 5.627 15 C 0.033 3.967 16 C -0.082 4.082 17 C -0.207 4.207 18 C 0.157 3.843 19 O -0.213 6.213 20 C -0.390 4.390 21 H 0.107 0.893 22 C 0.064 3.936 23 N -0.877 5.877 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.179 4.179 29 C -0.064 4.064 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.414 0.586 41 H 0.116 0.884 42 H 0.139 0.861 43 H 0.280 0.720 44 H 0.122 0.878 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 5.549 -25.506 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 H 0.098 0.902 4 C -0.169 4.169 5 C -0.169 4.169 6 C 0.030 3.970 7 H 0.108 0.892 8 C -0.227 4.227 9 N -0.321 5.321 10 C 0.310 3.690 11 O -0.398 6.398 12 C 0.277 3.723 13 O -0.371 6.371 14 N -0.273 5.273 15 C -0.059 4.059 16 C -0.102 4.102 17 C -0.227 4.227 18 C 0.104 3.896 19 O -0.118 6.118 20 C -0.466 4.466 21 H 0.125 0.875 22 C -0.140 4.140 23 N -0.514 5.514 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.199 4.199 29 C -0.084 4.084 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.251 0.749 41 H 0.134 0.866 42 H 0.157 0.843 43 H 0.090 0.910 44 H 0.140 0.860 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.167 5.162 -25.241 26.491 hybrid contribution 0.033 -0.221 0.256 0.340 sum -6.134 4.941 -24.985 26.197 Atomic orbital electron populations 1.22124 0.93529 1.03150 1.03140 1.21979 0.95415 0.95666 0.83952 0.90247 1.22842 0.96453 1.00728 0.96830 1.22787 0.97248 1.02693 0.94166 1.21782 0.84457 0.96980 0.93781 0.89205 1.22447 0.96906 1.00208 1.03169 1.48477 1.28021 1.47208 1.08345 1.19772 0.84080 0.82555 0.82599 1.90721 1.25227 1.42436 1.81461 1.19983 0.83915 0.84445 0.83973 1.90729 1.27546 1.36961 1.81905 1.42861 1.30074 1.48983 1.05403 1.17273 1.07100 0.93697 0.87865 1.20596 0.99183 0.98655 0.91783 1.21104 1.04524 0.96567 1.00464 1.19185 0.91639 0.90820 0.87959 1.83575 1.67074 1.39654 1.21461 1.20776 1.34813 1.01527 0.89457 0.87535 1.24480 0.95820 0.99671 0.94020 1.69647 1.38887 1.37999 1.04901 0.86173 0.80007 0.82936 0.77767 1.19822 1.20753 1.18281 1.20123 1.07298 1.01715 0.90797 1.20674 0.97023 0.92174 0.98479 0.89913 0.91791 0.92461 0.89599 0.90335 0.90321 0.89747 0.89596 0.91400 0.93393 0.74928 0.86608 0.84329 0.90966 0.85989 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.48 37.16 0.32 -1.05 16 2 C 0.13 1.09 3.75 -66.53 -0.25 0.84 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.13 -0.75 6.50 -24.70 -0.16 -0.91 16 5 C -0.13 -0.82 6.48 -24.89 -0.16 -0.98 16 6 C 0.13 1.26 2.83 -66.95 -0.19 1.07 16 7 H 0.09 0.94 7.41 -51.93 -0.38 0.56 16 8 C -0.17 -1.79 8.67 37.15 0.32 -1.46 16 9 N -0.59 -6.22 2.98 -156.28 -0.47 -6.69 16 10 C 0.53 6.80 7.51 -11.65 -0.09 6.71 16 11 O -0.52 -7.35 14.31 5.48 0.08 -7.27 16 12 C 0.49 7.00 6.98 -11.65 -0.08 6.91 16 13 O -0.50 -7.58 9.40 5.46 0.05 -7.53 16 14 N -0.63 -8.90 5.31 -10.27 -0.05 -8.96 16 15 C 0.03 0.55 6.25 -83.69 -0.52 0.03 16 16 C -0.08 -1.43 9.96 -39.40 -0.39 -1.83 16 17 C -0.21 -4.29 9.16 -39.42 -0.36 -4.65 16 18 C 0.16 3.53 6.65 -39.06 -0.26 3.27 16 19 O -0.21 -5.50 8.58 0.09 0.00 -5.50 16 20 C -0.39 -10.76 9.94 30.88 0.31 -10.45 16 21 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 22 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 23 N -0.88 -24.94 13.96 55.48 0.77 -24.17 16 24 Si 0.91 21.37 28.62 -169.99 -4.86 16.51 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 28 C -0.18 -3.55 9.98 -39.42 -0.39 -3.94 16 29 C -0.06 -1.14 8.68 -39.40 -0.34 -1.48 16 30 H 0.08 0.87 6.31 -51.93 -0.33 0.55 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.45 8.05 -51.93 -0.42 0.04 16 35 H 0.08 0.45 7.76 -51.93 -0.40 0.05 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 1.16 4.70 -51.93 -0.24 0.92 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.46 8.00 -51.93 -0.42 0.05 16 40 H 0.41 5.09 8.31 -40.82 -0.34 4.75 16 41 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.14 2.99 5.64 -52.49 -0.30 2.70 16 43 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 45 H 0.13 2.17 6.41 -52.49 -0.34 1.84 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -30.04 363.10 -7.33 -37.36 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.97 Total: 7.03 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.35 Total: -6.26 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.25 Total: -39.82 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.13 Total: -20.30 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.86 Total: 16.51 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.04 -7.33 -37.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320610536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.254 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds