Wall clock time and date at job start Tue Mar 31 2020 17:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.41617 * 2 1 4 4 C 1.54697 * 110.39442 * 237.84846 * 2 1 3 5 5 C 1.55155 * 101.67820 * 204.36671 * 4 2 1 6 6 C 1.54329 * 102.94429 * 35.33228 * 5 4 2 7 7 H 1.09003 * 109.88013 * 97.22427 * 6 5 4 8 8 C 1.52992 * 110.01045 * 218.31957 * 6 5 4 9 9 N 1.47027 * 107.26945 * 337.80920 * 6 5 4 10 10 C 1.34775 * 125.64554 * 178.90004 * 9 6 5 11 11 O 1.21364 * 119.99897 * 179.28111 * 10 9 6 12 12 C 1.49319 * 119.99989 * 359.27674 * 10 9 6 13 13 O 1.21389 * 120.00187 * 353.69421 * 12 10 9 14 14 N 1.34780 * 120.00036 * 173.68767 * 12 10 9 15 15 C 1.39738 * 120.00003 * 185.82927 * 14 12 10 16 16 C 1.39003 * 120.00689 * 142.21605 * 15 14 12 17 17 C 1.37964 * 119.99219 * 180.27666 * 16 15 14 18 18 C 1.38935 * 120.00751 * 359.45038 * 17 16 15 19 19 O 1.35757 * 119.99455 * 180.28097 * 18 17 16 20 20 C 1.34809 * 116.99921 * 353.33820 * 19 18 17 21 21 H 1.08003 * 119.99618 * 5.11737 * 20 19 18 22 22 C 1.38647 * 119.99804 * 185.10861 * 20 19 18 23 23 N 1.31562 * 119.99497 * 180.02562 * 22 20 19 24 24 Si 1.86791 * 120.00306 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47211 * 89.99757 * 24 22 20 26 26 H 1.48503 * 109.47355 * 209.99822 * 24 22 20 27 27 H 1.48503 * 109.47366 * 329.99917 * 24 22 20 28 28 C 1.38936 * 120.01280 * 0.29662 * 18 17 16 29 29 C 1.37967 * 120.00919 * 359.97438 * 28 18 17 30 30 H 1.08996 * 109.47327 * 305.51346 * 1 2 3 31 31 H 1.08994 * 109.46991 * 65.51808 * 1 2 3 32 32 H 1.09006 * 109.47127 * 185.51680 * 1 2 3 33 33 H 1.08997 * 111.10309 * 86.19059 * 4 2 1 34 34 H 1.09004 * 110.80977 * 322.40714 * 4 2 1 35 35 H 1.08998 * 110.71772 * 276.97063 * 5 4 2 36 36 H 1.08993 * 110.87261 * 153.76851 * 5 4 2 37 37 H 1.09002 * 109.47058 * 171.58259 * 8 6 5 38 38 H 1.08998 * 109.47312 * 291.57529 * 8 6 5 39 39 H 1.08995 * 109.47776 * 51.58104 * 8 6 5 40 40 H 0.96997 * 119.99545 * 5.83033 * 14 12 10 41 41 H 1.08002 * 120.00164 * 0.02562 * 16 15 14 42 42 H 1.08002 * 119.99303 * 179.72967 * 17 16 15 43 43 H 0.97001 * 119.99985 * 180.02562 * 23 22 20 44 44 H 1.08005 * 119.99374 * 179.97438 * 28 18 17 45 45 H 1.07994 * 120.00381 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7716 -1.2276 5 6 3.4759 -1.2024 -0.7349 6 6 3.2463 -1.4811 0.7655 7 1 3.0937 -2.5486 0.9251 8 6 4.4506 -1.0007 1.5776 9 7 2.0431 -0.7383 1.1684 10 6 1.4964 -0.7372 2.4003 11 8 0.5051 -0.0736 2.6237 12 6 2.1103 -1.5526 3.4902 13 8 3.0306 -2.3040 3.2413 14 7 1.6426 -1.4542 4.7504 15 6 2.2929 -2.1226 5.7911 16 6 2.4068 -1.5216 7.0393 17 6 3.0539 -2.1793 8.0650 18 6 3.5817 -3.4470 7.8537 19 8 4.2134 -4.0963 8.8648 20 6 4.4163 -3.4046 10.0040 21 1 4.0089 -2.4102 10.1117 22 6 5.1479 -3.9699 11.0372 23 7 5.3455 -3.2950 12.1491 24 14 5.8528 -5.6896 10.8507 25 1 7.2147 -5.6054 10.2646 26 1 5.9267 -6.3416 12.1829 27 1 4.9776 -6.4890 9.9562 28 6 3.4634 -4.0502 6.6077 29 6 2.8213 -3.3907 5.5800 30 1 -0.3634 0.5969 0.8365 31 1 -0.3633 0.4259 -0.9352 32 1 -0.3634 -1.0230 0.0988 33 1 2.1425 -0.1209 -2.0989 34 1 1.4473 -1.6408 -1.4424 35 1 4.1960 -0.3956 -0.8714 36 1 3.8078 -2.1046 -1.2484 37 1 4.2200 -1.0631 2.6411 38 1 5.3128 -1.6294 1.3554 39 1 4.6771 0.0326 1.3150 40 1 0.8547 -0.9195 4.9349 41 1 1.9923 -0.5381 7.2050 42 1 3.1462 -1.7105 9.0336 43 1 5.8576 -3.6902 12.8719 44 1 3.8742 -5.0355 6.4437 45 1 2.7291 -3.8598 4.6116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320610536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:39 Heat of formation + Delta-G solvation = -67.108907 kcal Electronic energy + Delta-G solvation = -28301.093217 eV Core-core repulsion = 24284.466812 eV Total energy + Delta-G solvation = -4016.626405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -42.33055 -41.09304 -40.19267 -38.83135 -38.30540 -35.57295 -34.37510 -33.66195 -32.72187 -31.96102 -30.11345 -29.32301 -27.42801 -26.14056 -24.94856 -24.03185 -23.49745 -22.31052 -21.90042 -20.59708 -19.79727 -19.20856 -18.69981 -18.24883 -17.59013 -17.41432 -16.81272 -16.58194 -16.19650 -15.73055 -15.69304 -15.43901 -15.05282 -14.98499 -14.51516 -14.40606 -14.22735 -14.18568 -14.12759 -13.97053 -13.77745 -13.43770 -13.27885 -13.06803 -12.80397 -12.68855 -12.61861 -12.48246 -12.25399 -11.99631 -11.76107 -11.65726 -11.61128 -11.41102 -11.07253 -10.68240 -10.49953 -9.91920 -9.86641 -8.78052 -8.49838 -6.21506 0.05722 0.46275 0.63943 1.17846 1.33129 1.36656 1.53253 2.04754 2.28712 2.36420 2.73072 3.00138 3.12684 3.19093 3.56114 3.68716 3.94268 3.98509 4.05890 4.10691 4.29672 4.34448 4.41511 4.47447 4.50247 4.59117 4.63588 4.73887 4.80331 4.92539 4.97144 4.99385 5.11007 5.11690 5.16455 5.19663 5.27417 5.28558 5.35716 5.45959 5.48519 5.50206 5.73484 5.82128 6.01935 6.14364 6.22773 6.62758 6.84358 6.88928 7.56938 8.61318 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.002372 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.797685 B =11800.402988 C =12386.174034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.087 0.913 4 C -0.120 4.120 5 C -0.123 4.123 6 C 0.127 3.873 7 H 0.078 0.922 8 C -0.166 4.166 9 N -0.581 5.581 10 C 0.526 3.474 11 O -0.538 6.538 12 C 0.496 3.504 13 O -0.504 6.504 14 N -0.626 5.626 15 C 0.061 3.939 16 C -0.078 4.078 17 C -0.214 4.214 18 C 0.121 3.879 19 O -0.240 6.240 20 C -0.399 4.399 21 H 0.086 0.914 22 C 0.011 3.989 23 N -0.921 5.921 24 Si 0.968 3.032 25 H -0.267 1.267 26 H -0.268 1.268 27 H -0.262 1.262 28 C -0.174 4.174 29 C -0.064 4.064 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.426 0.574 41 H 0.148 0.852 42 H 0.122 0.878 43 H 0.285 0.715 44 H 0.134 0.866 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 5.695 -29.527 30.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.105 0.895 4 C -0.158 4.158 5 C -0.160 4.160 6 C 0.024 3.976 7 H 0.096 0.904 8 C -0.224 4.224 9 N -0.315 5.315 10 C 0.308 3.692 11 O -0.416 6.416 12 C 0.278 3.722 13 O -0.380 6.380 14 N -0.273 5.273 15 C -0.032 4.032 16 C -0.098 4.098 17 C -0.234 4.234 18 C 0.071 3.929 19 O -0.147 6.147 20 C -0.475 4.475 21 H 0.103 0.897 22 C -0.188 4.188 23 N -0.561 5.561 24 Si 0.791 3.209 25 H -0.192 1.192 26 H -0.193 1.193 27 H -0.186 1.186 28 C -0.193 4.193 29 C -0.084 4.084 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.265 0.735 41 H 0.166 0.834 42 H 0.140 0.860 43 H 0.094 0.906 44 H 0.152 0.848 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.595 5.331 -29.338 30.539 hybrid contribution 0.006 -0.090 1.134 1.137 sum -6.589 5.241 -28.204 29.434 Atomic orbital electron populations 1.22059 0.93702 1.02187 1.03469 1.22285 0.95367 0.96244 0.83962 0.89522 1.22852 0.95668 1.00930 0.96314 1.22786 0.97916 1.03931 0.91408 1.21917 0.83466 0.96138 0.96033 0.90362 1.22373 0.97702 1.01029 1.01249 1.48644 1.28012 1.46702 1.08116 1.19457 0.84102 0.82547 0.83087 1.90728 1.25879 1.43188 1.81809 1.20329 0.83563 0.84181 0.84077 1.90734 1.27829 1.37294 1.82147 1.42818 1.30477 1.49101 1.04940 1.17371 1.04563 0.93063 0.88214 1.20817 0.98248 0.99700 0.91044 1.21125 1.05123 0.96378 1.00787 1.19640 0.92766 0.92035 0.88438 1.83524 1.69521 1.40068 1.21614 1.20734 1.35026 1.01137 0.90629 0.89658 1.25258 0.96347 1.03436 0.93718 1.69726 1.40720 1.39819 1.05855 0.85248 0.79171 0.78399 0.78126 1.19183 1.19280 1.18611 1.20334 1.06773 1.02220 0.89989 1.20865 0.96604 0.92454 0.98493 0.92324 0.89250 0.93460 0.86901 0.90098 0.89225 0.88132 0.92716 0.90731 0.92519 0.73538 0.83398 0.86005 0.90557 0.84813 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.48 71.98 0.61 -1.67 16 2 C 0.12 1.66 3.75 45.39 0.17 1.84 16 3 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.12 -0.90 6.50 31.91 0.21 -0.69 16 5 C -0.12 -1.08 6.48 31.78 0.21 -0.87 16 6 C 0.13 2.10 2.83 45.34 0.13 2.23 16 7 H 0.08 1.49 7.41 -2.39 -0.02 1.48 16 8 C -0.17 -3.19 8.67 71.98 0.62 -2.56 16 9 N -0.58 -11.13 2.98 -766.70 -2.29 -13.42 16 10 C 0.53 12.77 7.51 87.23 0.66 13.43 16 11 O -0.54 -14.45 14.31 -3.29 -0.05 -14.50 16 12 C 0.50 13.23 6.98 87.23 0.61 13.84 16 13 O -0.50 -14.66 9.40 -3.37 -0.03 -14.69 16 14 N -0.63 -16.57 5.31 -304.74 -1.62 -18.19 16 15 C 0.06 1.96 6.25 38.25 0.24 2.20 16 16 C -0.08 -2.65 9.96 22.39 0.22 -2.42 16 17 C -0.21 -9.10 9.16 22.37 0.20 -8.89 16 18 C 0.12 5.57 6.65 22.60 0.15 5.72 16 19 O -0.24 -12.83 8.58 -22.61 -0.19 -13.03 16 20 C -0.40 -23.08 9.94 67.92 0.68 -22.41 16 21 H 0.09 5.11 5.44 -2.91 -0.02 5.10 16 22 C 0.01 0.64 5.49 84.83 0.47 1.10 16 23 N -0.92 -54.40 13.96 21.61 0.30 -54.10 16 24 Si 0.97 45.05 28.62 68.60 1.96 47.02 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 28 C -0.17 -6.79 9.98 22.37 0.22 -6.56 16 29 C -0.06 -2.20 8.68 22.39 0.19 -2.01 16 30 H 0.06 1.16 6.31 -2.39 -0.02 1.14 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.08 0.62 8.05 -2.38 -0.02 0.60 16 35 H 0.09 0.64 7.76 -2.39 -0.02 0.62 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.05 1.41 4.70 -2.39 -0.01 1.40 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 0.97 8.00 -2.39 -0.02 0.95 16 40 H 0.43 9.58 8.31 -92.71 -0.77 8.81 16 41 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 42 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 43 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 45 H 0.14 4.54 6.41 -2.91 -0.02 4.52 16 Total: -1.00 -67.78 363.10 3.94 -63.84 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.26 Total: 24.82 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 5.59 Total: -7.74 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -3.60 Total: -85.72 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.27 Total: -42.22 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.96 Total: 47.02 kcal Total: -67.78 3.94 -63.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320610536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.266 kcal (2) G-P(sol) polarization free energy of solvation -67.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds