Wall clock time and date at job start Tue Mar 31 2020 17:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.52144 * 2 1 4 4 C 1.53033 * 109.49748 * 239.91660 * 2 1 3 5 5 C 1.53040 * 109.53711 * 178.68571 * 4 2 1 6 6 C 1.52759 * 109.38356 * 61.24321 * 5 4 2 7 7 N 1.46928 * 109.00481 * 305.58453 * 6 5 4 8 8 C 1.34777 * 120.62969 * 233.58528 * 7 6 5 9 9 O 1.21366 * 119.99980 * 184.23554 * 8 7 6 10 10 C 1.49319 * 120.00100 * 4.23258 * 8 7 6 11 11 O 1.21386 * 120.00179 * 353.54046 * 10 8 7 12 12 N 1.34779 * 119.99831 * 173.81660 * 10 8 7 13 13 C 1.39742 * 119.99676 * 184.60512 * 12 10 8 14 14 C 1.38992 * 120.00761 * 324.64074 * 13 12 10 15 15 C 1.37971 * 119.99205 * 179.74556 * 14 13 12 16 16 C 1.38931 * 120.00673 * 0.53474 * 15 14 13 17 17 O 1.35761 * 119.99313 * 179.71818 * 16 15 14 18 18 C 1.34800 * 116.99781 * 185.43441 * 17 16 15 19 19 H 1.08001 * 120.00208 * 5.24136 * 18 17 16 20 20 C 1.38654 * 119.99813 * 185.24222 * 18 17 16 21 21 N 1.31560 * 120.00024 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00096 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46924 * 90.00111 * 22 20 18 24 24 H 1.48497 * 109.47379 * 210.00366 * 22 20 18 25 25 H 1.48504 * 109.46979 * 330.00619 * 22 20 18 26 26 C 1.38938 * 120.01349 * 359.74302 * 16 15 14 27 27 C 1.37964 * 120.00812 * 359.97438 * 26 16 15 28 28 C 1.46925 * 118.73703 * 53.31423 * 7 6 5 29 29 H 1.08998 * 109.47338 * 299.92507 * 1 2 3 30 30 H 1.08997 * 109.46869 * 59.91878 * 1 2 3 31 31 H 1.08998 * 109.47412 * 179.91881 * 1 2 3 32 32 H 1.08998 * 109.46585 * 298.70658 * 4 2 1 33 33 H 1.09001 * 109.46045 * 58.66392 * 4 2 1 34 34 H 1.09006 * 109.49814 * 181.31510 * 5 4 2 35 35 H 1.09001 * 109.50017 * 301.41207 * 5 4 2 36 36 H 1.09007 * 109.50869 * 185.70954 * 6 5 4 37 37 H 1.08996 * 109.43706 * 65.42340 * 6 5 4 38 38 H 0.96993 * 120.00099 * 4.59341 * 12 10 8 39 39 H 1.08003 * 120.00267 * 0.02562 * 14 13 12 40 40 H 1.08005 * 119.99561 * 180.27876 * 15 14 13 41 41 H 0.96996 * 120.00340 * 179.97438 * 21 20 18 42 42 H 1.08002 * 119.99700 * 179.97438 * 26 16 15 43 43 H 1.07998 * 120.00318 * 180.02562 * 27 26 16 44 44 H 1.09002 * 109.58711 * 66.42954 * 28 7 6 45 45 H 1.08998 * 109.58484 * 186.71001 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 6 4.1055 -1.4217 -0.0331 7 7 3.5046 -0.8291 1.1697 8 6 4.2811 -0.3856 2.1780 9 8 3.7721 0.0310 3.1979 10 6 5.7678 -0.4068 2.0403 11 8 6.2803 -0.9298 1.0722 12 7 6.5409 0.1500 2.9937 13 6 7.9258 0.2161 2.8197 14 6 8.5945 -0.8137 2.1684 15 6 9.9613 -0.7456 1.9922 16 6 10.6706 0.3469 2.4755 17 8 12.0162 0.4108 2.3071 18 6 12.6585 1.4391 2.8963 19 1 12.1169 2.1166 3.5398 20 6 14.0144 1.6271 2.6761 21 7 14.6741 0.8021 1.8918 22 14 14.9044 3.0524 3.4920 23 1 15.4319 2.6172 4.8102 24 1 16.0301 3.4923 2.6291 25 1 13.9587 4.1809 3.6854 26 6 10.0032 1.3737 3.1318 27 6 8.6357 1.3090 3.3031 28 6 2.0413 -0.7238 1.2496 29 1 -0.3634 0.5127 0.8906 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6968 -1.7573 -1.2353 33 1 1.6582 -0.2245 -2.1388 34 1 3.9335 -1.1898 -2.1670 35 1 3.9160 0.3388 -1.2540 36 1 5.1896 -1.3160 0.0102 37 1 3.8412 -2.4775 -0.0913 38 1 6.1359 0.5050 3.8004 39 1 8.0437 -1.6649 1.7963 40 1 10.4803 -1.5436 1.4821 41 1 15.6226 0.9338 1.7374 42 1 10.5549 2.2226 3.5078 43 1 8.1170 2.1074 3.8129 44 1 1.6052 -1.7216 1.2981 45 1 1.7637 -0.1601 2.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321855057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:44 Heat of formation + Delta-G solvation = -53.284486 kcal Electronic energy + Delta-G solvation = -27822.551501 eV Core-core repulsion = 23806.524568 eV Total energy + Delta-G solvation = -4016.026933 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.23981 -39.61930 -38.64375 -37.91658 -36.71072 -34.51791 -33.64723 -32.25702 -32.15103 -30.31143 -28.53308 -27.37546 -26.30738 -25.42663 -23.69830 -22.59133 -22.35275 -21.28187 -20.47129 -19.84392 -18.16395 -17.84347 -17.34524 -16.94031 -16.23634 -16.08925 -15.57170 -15.39738 -14.73846 -14.67738 -14.53757 -14.28600 -14.15251 -13.79005 -13.61438 -13.54268 -13.30989 -12.95291 -12.88289 -12.62264 -12.48939 -12.18978 -11.88457 -11.69178 -11.66308 -11.50379 -11.37898 -11.19581 -11.11372 -10.83898 -10.72739 -10.70114 -10.48133 -9.85531 -9.39628 -9.04249 -8.94685 -8.79078 -8.28758 -7.05487 -6.50892 -4.08529 1.20123 2.11122 2.13194 2.30428 3.08385 3.10701 3.15444 3.16887 3.41693 3.92139 4.19813 4.38239 4.42698 4.49708 4.54218 4.77736 4.99662 5.04674 5.08836 5.17225 5.22652 5.25948 5.35338 5.40692 5.46056 5.48816 5.64591 5.65385 5.70194 5.74347 5.78944 5.83220 6.06263 6.08559 6.10875 6.11715 6.32796 6.70320 6.71530 6.83601 6.94452 7.06282 7.14111 7.28300 7.40856 7.65156 7.69922 7.93210 8.05057 8.94224 9.63102 10.66632 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028747 B = 0.002112 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.782989 B =13254.325152 C =13590.048156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.133 4.133 6 C 0.041 3.959 7 N -0.579 5.579 8 C 0.511 3.489 9 O -0.527 6.527 10 C 0.501 3.499 11 O -0.499 6.499 12 N -0.618 5.618 13 C 0.019 3.981 14 C -0.062 4.062 15 C -0.180 4.180 16 C 0.151 3.849 17 O -0.172 6.172 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.220 4.220 27 C -0.080 4.080 28 C 0.111 3.889 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.165 0.835 37 H 0.065 0.935 38 H 0.415 0.585 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.271 0.729 42 H 0.133 0.867 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.268 -2.136 -2.988 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.171 4.171 6 C -0.080 4.080 7 N -0.311 5.311 8 C 0.294 3.706 9 O -0.404 6.404 10 C 0.284 3.716 11 O -0.377 6.377 12 N -0.263 5.263 13 C -0.073 4.073 14 C -0.082 4.082 15 C -0.200 4.200 16 C 0.096 3.904 17 O -0.075 6.075 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.240 4.240 27 C -0.100 4.100 28 C -0.011 4.011 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.181 0.819 37 H 0.083 0.917 38 H 0.251 0.749 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.081 0.919 42 H 0.151 0.849 43 H 0.131 0.869 44 H 0.089 0.911 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.779 -2.445 -3.327 24.134 hybrid contribution 0.013 0.965 0.689 1.185 sum -23.765 -1.481 -2.638 23.957 Atomic orbital electron populations 1.21764 0.94214 1.02103 1.02159 1.21507 0.96019 1.00212 0.94895 0.90696 1.21639 0.95882 1.00657 0.97307 1.21825 0.95340 1.01677 0.98301 1.23384 1.06076 0.96236 0.82282 1.47955 1.06524 1.58463 1.18192 1.20024 0.87875 0.78872 0.83825 1.90745 1.75085 1.46312 1.28260 1.20079 0.87703 0.80582 0.83236 1.90256 1.73547 1.43944 1.29956 1.42879 1.05829 1.57191 1.20364 1.17246 0.80519 0.98216 1.11352 1.20730 0.93047 0.96931 0.97490 1.20130 0.92989 0.99085 1.07800 1.19473 0.85089 0.93125 0.92665 1.83995 1.13288 1.45837 1.64341 1.21337 0.91896 1.06746 1.26875 0.88957 1.25318 0.95741 0.98660 0.96811 1.70035 1.09514 1.35606 1.34137 0.85698 0.79101 0.79783 0.78774 1.19819 1.20224 1.19153 1.20990 0.93688 1.01532 1.07792 1.20517 0.94005 0.95287 1.00146 1.21806 0.78825 1.01208 0.99244 0.92344 0.92194 0.92421 0.91769 0.91694 0.90409 0.91611 0.81887 0.91696 0.74859 0.85173 0.85913 0.91891 0.84897 0.86865 0.91054 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.20 37.16 0.34 -0.48 16 2 C -0.11 -0.79 2.87 -90.50 -0.26 -1.05 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -0.82 5.17 -26.69 -0.14 -0.96 16 5 C -0.13 -1.12 6.06 -26.83 -0.16 -1.29 16 6 C 0.04 0.41 6.24 -3.93 -0.02 0.38 16 7 N -0.58 -6.37 2.98 -173.59 -0.52 -6.89 16 8 C 0.51 6.74 7.75 -11.65 -0.09 6.65 16 9 O -0.53 -7.72 15.92 5.48 0.09 -7.63 16 10 C 0.50 7.18 7.65 -11.65 -0.09 7.10 16 11 O -0.50 -7.75 10.45 5.47 0.06 -7.69 16 12 N -0.62 -8.91 5.32 -10.27 -0.05 -8.97 16 13 C 0.02 0.32 6.30 -83.69 -0.53 -0.20 16 14 C -0.06 -1.15 8.69 -39.40 -0.34 -1.50 16 15 C -0.18 -3.77 9.98 -39.42 -0.39 -4.17 16 16 C 0.15 3.55 6.65 -39.07 -0.26 3.29 16 17 O -0.17 -4.78 9.75 0.10 0.00 -4.78 16 18 C -0.39 -10.65 9.44 30.89 0.29 -10.36 16 19 H 0.09 2.30 5.28 -52.49 -0.28 2.02 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 22 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.22 -4.58 9.13 -39.42 -0.36 -4.94 16 27 C -0.08 -1.40 9.96 -39.40 -0.39 -1.79 16 28 C 0.11 0.99 5.71 -3.71 -0.02 0.97 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.17 2.01 3.71 -57.18 -0.21 1.79 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.41 5.14 8.30 -40.82 -0.34 4.80 16 39 H 0.13 2.28 6.23 -52.48 -0.33 1.95 16 40 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 42 H 0.13 2.74 5.70 -52.49 -0.30 2.44 16 43 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.91 7.03 -51.93 -0.37 0.55 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -30.57 367.34 -7.71 -38.28 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.03 Total: 8.43 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.52 Total: -7.36 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.19 Total: -39.79 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: 0.15 Total: -20.09 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.57 -7.71 -38.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321855057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.006 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds