Wall clock time and date at job start Tue Mar 31 2020 17:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.52144 * 2 1 4 4 C 1.53033 * 109.49748 * 239.91660 * 2 1 3 5 5 C 1.53040 * 109.53711 * 178.68571 * 4 2 1 6 6 C 1.52759 * 109.38356 * 61.24321 * 5 4 2 7 7 N 1.46928 * 109.00481 * 305.58453 * 6 5 4 8 8 C 1.34777 * 120.62969 * 233.58528 * 7 6 5 9 9 O 1.21366 * 119.99980 * 184.23554 * 8 7 6 10 10 C 1.49319 * 120.00100 * 4.23258 * 8 7 6 11 11 O 1.21386 * 120.00179 * 353.54046 * 10 8 7 12 12 N 1.34779 * 119.99831 * 173.81660 * 10 8 7 13 13 C 1.39742 * 119.99676 * 184.60512 * 12 10 8 14 14 C 1.38992 * 120.00761 * 324.64074 * 13 12 10 15 15 C 1.37971 * 119.99205 * 179.74556 * 14 13 12 16 16 C 1.38931 * 120.00673 * 0.53474 * 15 14 13 17 17 O 1.35761 * 119.99313 * 179.71818 * 16 15 14 18 18 C 1.34800 * 116.99781 * 185.43441 * 17 16 15 19 19 H 1.08001 * 120.00208 * 5.24136 * 18 17 16 20 20 C 1.38654 * 119.99813 * 185.24222 * 18 17 16 21 21 N 1.31560 * 120.00024 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00096 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46924 * 90.00111 * 22 20 18 24 24 H 1.48497 * 109.47379 * 210.00366 * 22 20 18 25 25 H 1.48504 * 109.46979 * 330.00619 * 22 20 18 26 26 C 1.38938 * 120.01349 * 359.74302 * 16 15 14 27 27 C 1.37964 * 120.00812 * 359.97438 * 26 16 15 28 28 C 1.46925 * 118.73703 * 53.31423 * 7 6 5 29 29 H 1.08998 * 109.47338 * 299.92507 * 1 2 3 30 30 H 1.08997 * 109.46869 * 59.91878 * 1 2 3 31 31 H 1.08998 * 109.47412 * 179.91881 * 1 2 3 32 32 H 1.08998 * 109.46585 * 298.70658 * 4 2 1 33 33 H 1.09001 * 109.46045 * 58.66392 * 4 2 1 34 34 H 1.09006 * 109.49814 * 181.31510 * 5 4 2 35 35 H 1.09001 * 109.50017 * 301.41207 * 5 4 2 36 36 H 1.09007 * 109.50869 * 185.70954 * 6 5 4 37 37 H 1.08996 * 109.43706 * 65.42340 * 6 5 4 38 38 H 0.96993 * 120.00099 * 4.59341 * 12 10 8 39 39 H 1.08003 * 120.00267 * 0.02562 * 14 13 12 40 40 H 1.08005 * 119.99561 * 180.27876 * 15 14 13 41 41 H 0.96996 * 120.00340 * 179.97438 * 21 20 18 42 42 H 1.08002 * 119.99700 * 179.97438 * 26 16 15 43 43 H 1.07998 * 120.00318 * 180.02562 * 27 26 16 44 44 H 1.09002 * 109.58711 * 66.42954 * 28 7 6 45 45 H 1.08998 * 109.58484 * 186.71001 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 6 4.1055 -1.4217 -0.0331 7 7 3.5046 -0.8291 1.1697 8 6 4.2811 -0.3856 2.1780 9 8 3.7721 0.0310 3.1979 10 6 5.7678 -0.4068 2.0403 11 8 6.2803 -0.9298 1.0722 12 7 6.5409 0.1500 2.9937 13 6 7.9258 0.2161 2.8197 14 6 8.5945 -0.8137 2.1684 15 6 9.9613 -0.7456 1.9922 16 6 10.6706 0.3469 2.4755 17 8 12.0162 0.4108 2.3071 18 6 12.6585 1.4391 2.8963 19 1 12.1169 2.1166 3.5398 20 6 14.0144 1.6271 2.6761 21 7 14.6741 0.8021 1.8918 22 14 14.9044 3.0524 3.4920 23 1 15.4319 2.6172 4.8102 24 1 16.0301 3.4923 2.6291 25 1 13.9587 4.1809 3.6854 26 6 10.0032 1.3737 3.1318 27 6 8.6357 1.3090 3.3031 28 6 2.0413 -0.7238 1.2496 29 1 -0.3634 0.5127 0.8906 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6968 -1.7573 -1.2353 33 1 1.6582 -0.2245 -2.1388 34 1 3.9335 -1.1898 -2.1670 35 1 3.9160 0.3388 -1.2540 36 1 5.1896 -1.3160 0.0102 37 1 3.8412 -2.4775 -0.0913 38 1 6.1359 0.5050 3.8004 39 1 8.0437 -1.6649 1.7963 40 1 10.4803 -1.5436 1.4821 41 1 15.6226 0.9338 1.7374 42 1 10.5549 2.2226 3.5078 43 1 8.1170 2.1074 3.8129 44 1 1.6052 -1.7216 1.2981 45 1 1.7637 -0.1601 2.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321855057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:42 Heat of formation + Delta-G solvation = -72.458501 kcal Electronic energy + Delta-G solvation = -27823.382949 eV Core-core repulsion = 23806.524568 eV Total energy + Delta-G solvation = -4016.858381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.36186 -40.96355 -40.06675 -38.84458 -38.26458 -35.77270 -34.61638 -34.15531 -32.86234 -31.91607 -30.00486 -28.19729 -27.45522 -26.98238 -24.84120 -23.94327 -23.27243 -22.65639 -21.58779 -20.71332 -19.89732 -19.07776 -18.83742 -18.22011 -17.56090 -17.19194 -16.64959 -16.38424 -16.17342 -16.09198 -15.60661 -15.43902 -15.25654 -15.22470 -15.01558 -14.56185 -14.49739 -14.27359 -13.98453 -13.71045 -13.56417 -13.34746 -13.26789 -13.05879 -12.77886 -12.73252 -12.47699 -12.33429 -12.11175 -12.03947 -11.84326 -11.67156 -11.46881 -11.33866 -11.07940 -10.64145 -10.12285 -9.85965 -9.82685 -8.70938 -8.46159 -6.13090 0.00738 0.51185 0.69063 1.16584 1.37942 1.46663 1.55122 2.00525 2.18829 2.36692 2.79620 3.11213 3.16858 3.48866 3.73499 3.82983 3.91923 4.02259 4.08319 4.10664 4.31129 4.36726 4.47260 4.48602 4.59239 4.62812 4.67614 4.75891 4.84804 4.87734 5.00636 5.03925 5.06262 5.14444 5.15466 5.20443 5.28221 5.32346 5.34247 5.39096 5.47208 5.57575 5.66711 5.93890 6.01793 6.06917 6.18405 6.62748 6.85268 6.98346 7.77391 8.76684 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028747 B = 0.002112 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.782989 B =13254.325152 C =13590.048156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.061 0.939 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.039 3.961 7 N -0.572 5.572 8 C 0.512 3.488 9 O -0.544 6.544 10 C 0.504 3.496 11 O -0.510 6.510 12 N -0.616 5.616 13 C 0.047 3.953 14 C -0.063 4.063 15 C -0.187 4.187 16 C 0.114 3.886 17 O -0.226 6.226 18 C -0.412 4.412 19 H 0.107 0.893 20 C -0.023 4.023 21 N -0.919 5.919 22 Si 1.019 2.981 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.250 1.250 26 C -0.221 4.221 27 C -0.072 4.072 28 C 0.108 3.892 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.428 0.572 39 H 0.143 0.857 40 H 0.119 0.881 41 H 0.273 0.727 42 H 0.133 0.867 43 H 0.155 0.845 44 H 0.089 0.911 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.765 -1.417 -2.603 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.079 0.921 4 C -0.151 4.151 5 C -0.169 4.169 6 C -0.081 4.081 7 N -0.303 5.303 8 C 0.294 3.706 9 O -0.423 6.423 10 C 0.287 3.713 11 O -0.388 6.388 12 N -0.262 5.262 13 C -0.046 4.046 14 C -0.083 4.083 15 C -0.207 4.207 16 C 0.063 3.937 17 O -0.132 6.132 18 C -0.488 4.488 19 H 0.124 0.876 20 C -0.221 4.221 21 N -0.557 5.557 22 Si 0.838 3.162 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.174 1.174 26 C -0.241 4.241 27 C -0.092 4.092 28 C -0.013 4.013 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.161 0.839 37 H 0.099 0.901 38 H 0.267 0.733 39 H 0.161 0.839 40 H 0.137 0.863 41 H 0.082 0.918 42 H 0.151 0.849 43 H 0.172 0.828 44 H 0.107 0.893 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -27.377 -1.741 -2.949 27.590 hybrid contribution 0.657 0.594 0.502 1.018 sum -26.720 -1.147 -2.447 26.856 Atomic orbital electron populations 1.21734 0.92603 1.02899 1.02574 1.21478 0.97265 0.99211 0.94285 0.92065 1.21628 0.94518 1.01448 0.97476 1.21809 0.96589 1.00651 0.97868 1.23342 1.04864 0.97336 0.82574 1.48101 1.07453 1.57097 1.17688 1.19724 0.87148 0.79413 0.84268 1.90746 1.75005 1.47551 1.28954 1.20416 0.88464 0.79620 0.82755 1.90314 1.74179 1.43971 1.30301 1.42828 1.04460 1.57648 1.21283 1.17350 0.81965 0.96961 1.08291 1.20879 0.92028 0.97822 0.97537 1.20282 0.94020 0.98595 1.07779 1.19945 0.84407 0.94916 0.94413 1.83962 1.15328 1.47208 1.66728 1.21852 0.92641 1.06915 1.27409 0.87623 1.26606 0.96385 1.01662 0.97462 1.70186 1.09919 1.38468 1.37101 0.84579 0.77719 0.76213 0.77679 1.18879 1.19888 1.17390 1.21114 0.95069 1.00752 1.07166 1.20831 0.92722 0.96191 0.99442 1.22020 0.77258 1.02320 0.99745 0.92318 0.91468 0.91422 0.90599 0.90600 0.89223 0.93034 0.83893 0.90139 0.73286 0.83891 0.86274 0.91837 0.84948 0.82778 0.89304 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 71.98 0.66 -0.51 16 2 C -0.10 -1.26 2.87 -10.72 -0.03 -1.29 16 3 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.24 5.17 30.62 0.16 -1.08 16 5 C -0.13 -1.92 6.06 30.53 0.19 -1.73 16 6 C 0.04 0.70 6.24 86.22 0.54 1.24 16 7 N -0.57 -11.36 2.98 -821.46 -2.45 -13.81 16 8 C 0.51 12.51 7.75 87.23 0.68 13.18 16 9 O -0.54 -14.84 15.92 -3.30 -0.05 -14.89 16 10 C 0.50 13.44 7.65 87.23 0.67 14.11 16 11 O -0.51 -15.02 10.45 -3.36 -0.04 -15.05 16 12 N -0.62 -16.17 5.32 -304.75 -1.62 -17.79 16 13 C 0.05 1.54 6.30 38.24 0.24 1.78 16 14 C -0.06 -2.28 8.69 22.39 0.19 -2.09 16 15 C -0.19 -8.04 9.98 22.37 0.22 -7.81 16 16 C 0.11 5.56 6.65 22.60 0.15 5.71 16 17 O -0.23 -13.31 9.75 -22.56 -0.22 -13.53 16 18 C -0.41 -23.31 9.44 67.92 0.64 -22.67 16 19 H 0.11 5.38 5.28 -2.91 -0.02 5.37 16 20 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 21 N -0.92 -55.69 13.67 21.61 0.30 -55.39 16 22 Si 1.02 41.88 29.55 68.60 2.03 43.90 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 25 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 26 C -0.22 -9.15 9.13 22.37 0.20 -8.94 16 27 C -0.07 -2.36 9.96 22.39 0.22 -2.14 16 28 C 0.11 1.65 5.71 86.36 0.49 2.14 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.14 3.30 3.71 -85.68 -0.32 2.98 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.43 9.29 8.30 -92.71 -0.77 8.52 16 39 H 0.14 4.83 6.23 -2.91 -0.02 4.81 16 40 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 41 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.13 5.44 5.70 -2.91 -0.02 5.42 16 43 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.48 7.03 -2.39 -0.02 1.46 16 Total: -1.00 -70.00 367.34 3.59 -66.40 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -0.05 Total: 31.11 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 5.69 Total: -10.95 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -3.77 Total: -87.00 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -0.31 Total: -43.47 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -70.00 3.59 -66.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321855057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.054 kcal (2) G-P(sol) polarization free energy of solvation -69.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds