Wall clock time and date at job start Tue Mar 31 2020 16:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99939 * 2 1 4 4 O 1.42903 * 109.47103 * 134.99982 * 3 2 1 5 5 C 1.35899 * 116.99930 * 180.02562 * 4 3 2 6 6 C 1.38747 * 120.05586 * 359.97438 * 5 4 3 7 7 C 1.38125 * 119.94590 * 180.02562 * 6 5 4 8 8 C 1.38289 * 120.05159 * 359.97438 * 7 6 5 9 9 C 1.38243 * 120.11362 * 0.02562 * 8 7 6 10 10 C 1.38163 * 120.05438 * 359.97438 * 9 8 7 11 11 C 1.50708 * 120.02715 * 179.97438 * 10 9 8 12 12 N 1.46498 * 109.47357 * 260.02510 * 11 10 9 13 13 C 1.34772 * 120.00011 * 180.02562 * 12 11 10 14 14 O 1.21351 * 120.00069 * 359.97438 * 13 12 11 15 15 C 1.49447 * 119.99996 * 180.02562 * 13 12 11 16 16 O 1.21351 * 119.99935 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00407 * 179.97438 * 15 13 12 18 18 C 1.46498 * 120.00422 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.47193 * 180.02562 * 18 17 15 20 20 C 1.50702 * 109.47088 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00119 * 359.97438 * 20 19 18 22 22 C 1.37880 * 120.00124 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99754 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00215 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47032 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47330 * 120.00063 * 24 22 20 27 27 H 1.48501 * 109.47120 * 240.00232 * 24 22 20 28 28 H 1.08006 * 119.99952 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00267 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99667 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47303 * 14.99672 * 3 2 1 32 32 H 1.08995 * 109.46897 * 254.99752 * 3 2 1 33 33 H 1.08000 * 120.03046 * 0.02562 * 6 5 4 34 34 H 1.07993 * 119.97844 * 179.72247 * 7 6 5 35 35 H 1.08004 * 119.94567 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.97538 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47162 * 20.02710 * 11 10 9 38 38 H 1.09005 * 109.46612 * 140.02285 * 11 10 9 39 39 H 0.97001 * 119.99694 * 359.97438 * 12 11 10 40 40 H 0.97010 * 119.99775 * 0.02562 * 17 15 13 41 41 H 1.09002 * 109.47148 * 300.00173 * 18 17 15 42 42 H 1.08998 * 109.46932 * 59.99807 * 18 17 15 43 43 H 1.09002 * 109.46926 * 299.99955 * 19 18 17 44 44 H 1.08998 * 109.47628 * 59.99879 * 19 18 17 45 45 H 0.97001 * 119.99611 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9091 2.3453 1.0790 6 6 3.6589 3.4669 0.3015 7 6 4.4558 4.5876 0.4313 8 6 5.5019 4.5924 1.3357 9 6 5.7533 3.4762 2.1115 10 6 4.9590 2.3527 1.9854 11 6 5.2339 1.1359 2.8310 12 7 5.9716 0.1479 2.0400 13 6 6.3285 -1.0279 2.5935 14 8 6.0392 -1.2681 3.7472 15 6 7.0816 -2.0356 1.7867 16 8 7.3713 -1.7952 0.6330 17 7 7.4390 -3.2113 2.3402 18 6 8.1767 -4.1993 1.5492 19 6 8.4552 -5.4348 2.4075 20 6 9.2135 -6.4514 1.5936 21 1 9.4707 -6.2378 0.5666 22 6 9.5790 -7.6542 2.1599 23 7 9.2654 -7.9145 3.4104 24 14 10.5196 -8.9140 1.1512 25 1 10.7479 -8.3825 -0.2165 26 1 11.8270 -9.1905 1.7989 27 1 9.7322 -10.1704 1.0695 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4755 1.4867 -0.9926 33 1 2.8417 3.4637 -0.4047 34 1 4.2643 5.4593 -0.1768 35 1 6.1242 5.4695 1.4355 36 1 6.5711 3.4823 2.8168 37 1 5.8276 1.4232 3.6989 38 1 4.2900 0.7038 3.1635 39 1 6.2026 0.3398 1.1176 40 1 7.2070 -3.4036 3.2624 41 1 7.5829 -4.4865 0.6814 42 1 9.1205 -3.7671 1.2167 43 1 9.0488 -5.1478 3.2756 44 1 7.5112 -5.8669 2.7397 45 1 9.5222 -8.7609 3.8087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322679527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:23 Heat of formation + Delta-G solvation = -69.962524 kcal Electronic energy + Delta-G solvation = -26933.691660 eV Core-core repulsion = 22916.941512 eV Total energy + Delta-G solvation = -4016.750147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84773 -40.16168 -38.29843 -37.93336 -35.52371 -34.76784 -34.42654 -32.83504 -31.74659 -30.35792 -29.77584 -27.29799 -26.82865 -25.23432 -23.27572 -22.67781 -21.83206 -20.98598 -20.30641 -20.09482 -18.66641 -18.16546 -16.83769 -16.77957 -16.38438 -16.19379 -16.07555 -15.69009 -15.16433 -15.07608 -14.89269 -14.64525 -14.38713 -14.28994 -13.76525 -13.43773 -13.33179 -13.13098 -13.06257 -12.88172 -12.55272 -12.31280 -11.85563 -11.63782 -11.62323 -11.43776 -11.20253 -11.18287 -11.05999 -10.63469 -10.37788 -9.95240 -9.77946 -9.51403 -9.33660 -9.23480 -9.11089 -8.64996 -8.57793 -8.39751 -6.08571 -4.11982 0.79519 1.01761 1.62656 1.70756 2.66935 2.92749 3.29043 3.35475 3.37059 3.41579 3.51886 4.06192 4.21548 4.29969 4.42320 4.44851 4.55764 4.62756 4.71043 4.84511 4.89038 4.89517 5.00830 5.17417 5.28149 5.28321 5.40272 5.44892 5.63816 5.87420 6.00505 6.10065 6.11139 6.14872 6.19957 6.22283 6.27430 6.36514 6.64375 6.73835 6.97224 7.16733 7.50630 7.60680 7.74107 7.89386 8.00914 8.24867 8.39862 8.93930 9.52792 11.02973 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.002081 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.615970 B =13453.901714 C =14443.753839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.157 4.157 3 C 0.087 3.913 4 O -0.303 6.303 5 C 0.150 3.850 6 C -0.213 4.213 7 C -0.071 4.071 8 C -0.160 4.160 9 C -0.059 4.059 10 C -0.143 4.143 11 C 0.171 3.829 12 N -0.697 5.697 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.498 3.502 16 O -0.534 6.534 17 N -0.687 5.687 18 C 0.119 3.881 19 C 0.010 3.990 20 C -0.522 4.522 21 H 0.061 0.939 22 C 0.058 3.942 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.412 0.588 40 H 0.410 0.590 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 27.004 -5.173 31.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.013 3.987 4 O -0.216 6.216 5 C 0.104 3.896 6 C -0.232 4.232 7 C -0.089 4.089 8 C -0.179 4.179 9 C -0.077 4.077 10 C -0.144 4.144 11 C 0.048 3.952 12 N -0.350 5.350 13 C 0.289 3.711 14 O -0.398 6.398 15 C 0.277 3.723 16 O -0.412 6.412 17 N -0.338 5.338 18 C -0.003 4.003 19 C -0.027 4.027 20 C -0.560 4.560 21 H 0.079 0.921 22 C -0.144 4.144 23 N -0.531 5.531 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.248 0.752 40 H 0.246 0.754 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.486 26.635 -4.918 31.200 hybrid contribution 0.337 -0.549 -0.679 0.936 sum -15.149 26.086 -5.598 30.681 Atomic orbital electron populations 1.23889 0.95367 1.02596 0.98866 1.22692 0.95706 0.97881 1.01206 1.21865 0.87694 0.97022 0.92153 1.86172 1.41890 1.35191 1.58316 1.18854 0.90574 0.86078 0.94135 1.21254 1.03959 0.94286 1.03697 1.21011 0.93900 0.97238 0.96749 1.21079 0.99437 0.98991 0.98356 1.21002 0.97279 0.91629 0.97823 1.19211 0.97228 0.97239 1.00758 1.20061 0.97427 0.85278 0.92449 1.45767 1.56384 1.15803 1.17084 1.20422 0.80389 0.83017 0.87273 1.90753 1.54093 1.77787 1.17134 1.19990 0.81383 0.83661 0.87228 1.90725 1.55216 1.78169 1.17101 1.46222 1.54582 1.15571 1.17387 1.21918 0.94586 0.88728 0.95024 1.19363 0.97771 0.90220 0.95356 1.21057 1.36083 1.00465 0.98446 0.92126 1.25012 0.95991 0.98329 0.95024 1.69975 1.46501 1.24121 1.12479 0.86443 0.79540 0.81150 0.80341 1.19594 1.20933 1.20935 0.87271 0.88340 0.85944 0.91447 0.90848 0.85316 0.85627 0.85551 0.84875 0.90186 0.89871 0.75205 0.75393 0.91938 0.91906 0.95644 0.95656 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 14.31 29.01 0.42 -0.64 16 2 C -0.16 -1.22 9.89 -36.03 -0.36 -1.57 16 3 C 0.09 0.65 5.15 36.00 0.19 0.83 16 4 O -0.30 -3.07 9.35 -19.42 -0.18 -3.25 16 5 C 0.15 1.41 6.66 -39.22 -0.26 1.15 16 6 C -0.21 -1.61 9.04 -39.43 -0.36 -1.96 16 7 C -0.07 -0.47 10.04 -39.60 -0.40 -0.87 16 8 C -0.16 -1.09 10.04 -39.56 -0.40 -1.49 16 9 C -0.06 -0.46 9.67 -39.61 -0.38 -0.84 16 10 C -0.14 -1.35 5.26 -104.47 -0.55 -1.90 16 11 C 0.17 1.86 5.46 -5.19 -0.03 1.83 16 12 N -0.70 -8.96 5.54 -61.91 -0.34 -9.30 16 13 C 0.51 8.07 7.89 -11.59 -0.09 7.98 16 14 O -0.52 -9.22 16.48 5.50 0.09 -9.13 16 15 C 0.50 8.95 7.89 -11.59 -0.09 8.86 16 16 O -0.53 -10.51 16.48 5.50 0.09 -10.42 16 17 N -0.69 -12.92 5.55 -60.73 -0.34 -13.26 16 18 C 0.12 2.54 5.61 -4.04 -0.02 2.52 16 19 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 20 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 21 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 24 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H 0.11 0.60 8.06 -52.48 -0.42 0.17 16 29 H 0.10 0.47 7.90 -52.49 -0.41 0.06 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.07 0.39 7.38 -51.93 -0.38 0.01 16 32 H 0.07 0.46 7.66 -51.93 -0.40 0.07 16 33 H 0.13 0.73 6.30 -52.49 -0.33 0.39 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 36 H 0.13 0.83 8.04 -52.49 -0.42 0.41 16 37 H 0.08 0.81 8.00 -51.93 -0.42 0.40 16 38 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16 39 H 0.41 5.11 7.94 -40.82 -0.32 4.79 16 40 H 0.41 7.37 7.95 -40.82 -0.32 7.05 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -32.71 393.99 -8.26 -40.97 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.34 Total: 6.85 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.89 Total: 0.77 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.06 Total: -48.11 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.00 Total: -22.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.71 -8.26 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322679527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.997 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds