Wall clock time and date at job start Tue Mar 31 2020 16:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99939 * 2 1 4 4 O 1.42903 * 109.47103 * 134.99982 * 3 2 1 5 5 C 1.35899 * 116.99930 * 180.02562 * 4 3 2 6 6 C 1.38747 * 120.05586 * 359.97438 * 5 4 3 7 7 C 1.38125 * 119.94590 * 180.02562 * 6 5 4 8 8 C 1.38289 * 120.05159 * 359.97438 * 7 6 5 9 9 C 1.38243 * 120.11362 * 0.02562 * 8 7 6 10 10 C 1.38163 * 120.05438 * 359.97438 * 9 8 7 11 11 C 1.50708 * 120.02715 * 179.97438 * 10 9 8 12 12 N 1.46498 * 109.47357 * 260.02510 * 11 10 9 13 13 C 1.34772 * 120.00011 * 180.02562 * 12 11 10 14 14 O 1.21351 * 120.00069 * 359.97438 * 13 12 11 15 15 C 1.49447 * 119.99996 * 180.02562 * 13 12 11 16 16 O 1.21351 * 119.99935 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00407 * 179.97438 * 15 13 12 18 18 C 1.46498 * 120.00422 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.47193 * 180.02562 * 18 17 15 20 20 C 1.50702 * 109.47088 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00119 * 359.97438 * 20 19 18 22 22 C 1.37880 * 120.00124 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99754 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00215 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47032 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47330 * 120.00063 * 24 22 20 27 27 H 1.48501 * 109.47120 * 240.00232 * 24 22 20 28 28 H 1.08006 * 119.99952 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00267 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99667 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47303 * 14.99672 * 3 2 1 32 32 H 1.08995 * 109.46897 * 254.99752 * 3 2 1 33 33 H 1.08000 * 120.03046 * 0.02562 * 6 5 4 34 34 H 1.07993 * 119.97844 * 179.72247 * 7 6 5 35 35 H 1.08004 * 119.94567 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.97538 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47162 * 20.02710 * 11 10 9 38 38 H 1.09005 * 109.46612 * 140.02285 * 11 10 9 39 39 H 0.97001 * 119.99694 * 359.97438 * 12 11 10 40 40 H 0.97010 * 119.99775 * 0.02562 * 17 15 13 41 41 H 1.09002 * 109.47148 * 300.00173 * 18 17 15 42 42 H 1.08998 * 109.46932 * 59.99807 * 18 17 15 43 43 H 1.09002 * 109.46926 * 299.99955 * 19 18 17 44 44 H 1.08998 * 109.47628 * 59.99879 * 19 18 17 45 45 H 0.97001 * 119.99611 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9091 2.3453 1.0790 6 6 3.6589 3.4669 0.3015 7 6 4.4558 4.5876 0.4313 8 6 5.5019 4.5924 1.3357 9 6 5.7533 3.4762 2.1115 10 6 4.9590 2.3527 1.9854 11 6 5.2339 1.1359 2.8310 12 7 5.9716 0.1479 2.0400 13 6 6.3285 -1.0279 2.5935 14 8 6.0392 -1.2681 3.7472 15 6 7.0816 -2.0356 1.7867 16 8 7.3713 -1.7952 0.6330 17 7 7.4390 -3.2113 2.3402 18 6 8.1767 -4.1993 1.5492 19 6 8.4552 -5.4348 2.4075 20 6 9.2135 -6.4514 1.5936 21 1 9.4707 -6.2378 0.5666 22 6 9.5790 -7.6542 2.1599 23 7 9.2654 -7.9145 3.4104 24 14 10.5196 -8.9140 1.1512 25 1 10.7479 -8.3825 -0.2165 26 1 11.8270 -9.1905 1.7989 27 1 9.7322 -10.1704 1.0695 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4755 1.4867 -0.9926 33 1 2.8417 3.4637 -0.4047 34 1 4.2643 5.4593 -0.1768 35 1 6.1242 5.4695 1.4355 36 1 6.5711 3.4823 2.8168 37 1 5.8276 1.4232 3.6989 38 1 4.2900 0.7038 3.1635 39 1 6.2026 0.3398 1.1176 40 1 7.2070 -3.4036 3.2624 41 1 7.5829 -4.4865 0.6814 42 1 9.1205 -3.7671 1.2167 43 1 9.0488 -5.1478 3.2756 44 1 7.5112 -5.8669 2.7397 45 1 9.5222 -8.7609 3.8087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322679527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:22 Heat of formation + Delta-G solvation = -91.904728 kcal Electronic energy + Delta-G solvation = -26934.643145 eV Core-core repulsion = 22916.941512 eV Total energy + Delta-G solvation = -4017.701633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.80154 -41.21695 -39.62515 -38.62618 -36.96858 -36.09011 -35.01783 -34.80882 -32.53153 -31.69569 -30.93014 -28.24500 -27.55408 -26.88696 -24.73416 -23.25080 -22.86632 -22.49482 -21.49627 -20.83826 -19.78047 -19.00744 -18.59041 -17.86515 -17.49045 -17.14790 -16.96349 -16.76638 -16.48539 -16.44610 -15.95129 -15.83558 -15.54039 -15.33826 -14.86282 -14.68190 -14.34245 -14.30733 -13.98825 -13.73598 -13.58654 -13.45667 -13.25826 -12.96548 -12.85440 -12.51453 -12.41975 -12.30173 -12.18802 -12.16668 -11.75311 -11.69311 -11.42453 -10.78008 -10.62654 -10.48302 -10.36772 -10.20597 -9.93141 -9.18940 -8.23858 -6.35072 0.18744 0.31557 0.44889 1.09068 1.38284 1.42275 1.44210 1.56613 2.11567 2.36282 2.39705 2.61804 2.90618 3.11014 3.44644 3.56320 3.74845 3.87921 4.01939 4.11696 4.19992 4.32271 4.36913 4.38157 4.44217 4.50524 4.51146 4.60004 4.76602 4.80211 4.92670 4.99169 5.06850 5.08180 5.32190 5.41859 5.44749 5.54207 5.55720 5.57233 5.62285 5.75123 5.83923 5.91918 6.12423 6.33493 6.40551 6.68685 6.79235 6.91632 7.34430 8.88456 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.002081 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.615970 B =13453.901714 C =14443.753839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.183 4.183 3 C 0.086 3.914 4 O -0.327 6.327 5 C 0.133 3.867 6 C -0.217 4.217 7 C -0.069 4.069 8 C -0.162 4.162 9 C -0.063 4.063 10 C -0.161 4.161 11 C 0.173 3.827 12 N -0.679 5.679 13 C 0.514 3.486 14 O -0.542 6.542 15 C 0.501 3.499 16 O -0.550 6.550 17 N -0.688 5.688 18 C 0.138 3.862 19 C 0.018 3.982 20 C -0.543 4.543 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.928 5.928 24 Si 0.969 3.031 25 H -0.262 1.262 26 H -0.278 1.278 27 H -0.278 1.278 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.415 0.585 40 H 0.414 0.586 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.008 0.992 44 H 0.007 0.993 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 28.915 -6.494 33.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.201 4.201 3 C 0.012 3.988 4 O -0.241 6.241 5 C 0.087 3.913 6 C -0.236 4.236 7 C -0.087 4.087 8 C -0.180 4.180 9 C -0.082 4.082 10 C -0.162 4.162 11 C 0.051 3.949 12 N -0.331 5.331 13 C 0.294 3.706 14 O -0.420 6.420 15 C 0.282 3.718 16 O -0.428 6.428 17 N -0.339 5.339 18 C 0.015 3.985 19 C -0.019 4.019 20 C -0.582 4.582 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.186 1.186 26 H -0.203 1.203 27 H -0.204 1.204 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.252 0.748 40 H 0.251 0.749 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.027 0.973 44 H 0.026 0.974 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.772 28.591 -6.256 33.247 hybrid contribution 0.340 -1.036 -0.286 1.127 sum -15.432 27.556 -6.542 32.253 Atomic orbital electron populations 1.24102 0.94830 1.03785 0.96539 1.22701 0.96410 0.97573 1.03452 1.21998 0.87477 0.97236 0.92134 1.86134 1.42725 1.36038 1.59230 1.19076 0.90803 0.86616 0.94838 1.21511 1.04619 0.93894 1.03574 1.21398 0.93139 0.97682 0.96466 1.21407 0.99613 0.99274 0.97709 1.21215 0.97294 0.91451 0.98216 1.19169 0.98424 0.97087 1.01542 1.20129 0.96545 0.85352 0.92857 1.45800 1.55067 1.14969 1.17265 1.19960 0.80476 0.83404 0.86720 1.90750 1.55256 1.78262 1.17750 1.20319 0.80870 0.83534 0.87108 1.90711 1.55792 1.78480 1.17864 1.46066 1.54715 1.15680 1.17434 1.21485 0.94852 0.87871 0.94258 1.19184 0.96254 0.91407 0.95074 1.21474 1.36392 1.01364 0.98944 0.91714 1.25940 0.96902 1.00527 0.96147 1.70091 1.47630 1.24917 1.14155 0.85335 0.78072 0.78290 0.78963 1.18614 1.20331 1.20351 0.86738 0.86450 0.87869 0.89697 0.90072 0.83599 0.82964 0.83286 0.83669 0.89324 0.91143 0.74800 0.74912 0.92115 0.91961 0.97346 0.97437 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 14.31 67.78 0.97 -0.81 16 2 C -0.18 -2.86 9.89 25.64 0.25 -2.60 16 3 C 0.09 1.21 5.15 71.24 0.37 1.58 16 4 O -0.33 -6.64 9.35 -92.41 -0.86 -7.51 16 5 C 0.13 2.40 6.66 22.50 0.15 2.55 16 6 C -0.22 -2.86 9.04 22.36 0.20 -2.65 16 7 C -0.07 -0.72 10.04 22.25 0.22 -0.49 16 8 C -0.16 -1.78 10.04 22.28 0.22 -1.55 16 9 C -0.06 -0.88 9.67 22.25 0.22 -0.67 16 10 C -0.16 -2.92 5.26 -19.77 -0.10 -3.03 16 11 C 0.17 3.76 5.46 85.64 0.47 4.22 16 12 N -0.68 -17.41 5.54 -468.13 -2.59 -20.01 16 13 C 0.51 16.42 7.89 87.27 0.69 17.11 16 14 O -0.54 -19.35 16.48 -3.25 -0.05 -19.40 16 15 C 0.50 18.10 7.89 87.27 0.69 18.79 16 16 O -0.55 -21.56 16.48 -3.25 -0.05 -21.61 16 17 N -0.69 -26.26 5.55 -464.42 -2.58 -28.84 16 18 C 0.14 5.96 5.61 86.38 0.48 6.45 16 19 C 0.02 0.94 5.09 29.85 0.15 1.09 16 20 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 21 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 22 C 0.00 0.19 5.46 84.65 0.46 0.66 16 23 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 24 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 25 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 27 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 28 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 29 H 0.12 0.88 7.90 -2.91 -0.02 0.85 16 30 H 0.10 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.08 0.85 7.38 -2.39 -0.02 0.84 16 32 H 0.08 0.96 7.66 -2.39 -0.02 0.94 16 33 H 0.15 1.30 6.30 -2.91 -0.02 1.28 16 34 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 35 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.15 1.57 8.04 -2.91 -0.02 1.54 16 37 H 0.09 1.77 8.00 -2.39 -0.02 1.75 16 38 H 0.07 1.73 7.85 -2.38 -0.02 1.71 16 39 H 0.42 10.22 7.94 -92.71 -0.74 9.49 16 40 H 0.41 15.26 7.95 -92.70 -0.74 14.53 16 41 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -70.02 393.99 1.39 -68.63 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.45 Total: 27.51 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 5.68 Total: 10.50 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -4.89 Total: -103.94 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.97 Total: -48.52 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.02 1.39 -68.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322679527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.274 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds